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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 919 fasta sequence
[TCGATCGATTCTTTCCACGGTTTCCATACTACACGAATGGATCGCCACGTCTTGCAGGGCGGCGGCGCCGCCGCCGTGCCGGTGCCGGATCAGTCCAGCTACGGCGGCGGCGGCGCCGGTGGTCATCAGGCGGATGTGGTCGTCGTCGACGGGGCGTTCCTGATGGAGCTGCTCGACGACACGCCGGCGGCGGCTGTGGCGGCGGAGCAGCAGCCGGAAGGCGACGACGCCGACGACCGGCTGAGCCGCGTCATGCGGTCCCTCGAGGCCGAGCTCGGCGGCGCCGGGGCTGCCCCGGCGCCGACGTCGGCGCCGCCGTTGGGGTCCTCCTCCGGCGACGGCGGCTCGCCGGCGAGCGGCGACGGCGGCAGGCTGGATCAGCTGGATGACGTGCTGTCGCTGTCCGACTTCGACGGTGGTGGCAGCAGCCGGCCGGGCTCGTGCTCGGCGCCGCCGTTCGAGTACTGGGCGCGGGCGGAGTTGCCGCCGGCGATGGGGCACGACATGGGCGGCGGCTGGTGCGTCGACGGCGACGGCGACGGCCTCGCCGCCGCCGTGGCAGGGTACGAGTTCGTCAGAGAGCCGTGCTACTACACTTACGGCTACGGTTACAACGAGAGCTCACATGTCGAGCAGCCGTACAGCCCACTTTGGGAATAATTGACAAATTAAATAAAATTTAGGAAAAGAGGCAAGAAAAAAAAAAGATATGCAATCATGGACTAAATGAGGGCAGATATATCTTCAGGGTTTCTTCGGATCGTAGGAACTTTAGAAGAAAATTGGTGGATCCAATTCCTACAGGATTTAAGTATTGTTCACTCAATTCGGTTTGGAGGAATTGGGCATGTGAAAATTGGAAGATTTTTTTTCCTTCACCTATGATTTCATAAGAATTTCATAGGAAACTGAACAAAAA]
[+] EMBL AK108390 [TCGATCGATTCTTTCCACGGTTTCCATACTACACGAATGGATCGCCACGTCTTGCAGGGCGGCGGCGCCGCCGCCGTGCCGGTGCCGGATCAGTCCAGCTACGGCGGCGGCGGCGCCGGTGGTCATCAGGCGGATGTGGTCGTCGTCGACGGGGCGTTCCTGATGGAGCTGCTCGACGACACGCCGGCGGCGGCTGTGGCGGCGGAGCAGCAGCCGGAAGGCGACGACGCCGACGACCGGCTGAGCCGCGTCATGCGGTCCCTCGAGGCCGAGCTCGGCGGCGCCGGGGCTGCCCCGGCGCCGACGTCGGCGCCGCCGTTGGGGTCCTCCTCCGGCGACGGCGGCTCGCCGGCGAGCGGCGACGGCGGCAGGCTGGATCAGCTGGATGACGTGCTGTCGCTGTCCGACTTCGACGGTGGTGGCAGCAGCCGGCCGGGCTCGTGCTCGGCGCCGCCGTTCGAGTACTGGGCGCGGGCGGAGTTGCCGCCGGCGATGGGGCACGACATGGGCGGCGGCTGGTGCGTCGACGGCGACGGCGACGGCCTCGCCGCCGCCGTGGCAGGGTACGAGTTCGTCAGAGAGCCGTGCTACTACACTTACGGCTACGGTTACAACGAGAGCTCACATGTCGAGCAGCCGTACAGCCCACTTTGGGAATAATTGACAAATTAAATAAAATTTAGGAAAAGAGGCAAGAAAAAAAAAAGATATGCAATCATGGACTAAATGAGGGCAGATATATCTTCAGGGTTTCTTCGGATCGTAGGAACTTTAGAAGAAAATTGGTGGATCCAATTCCTACAGGATTTAAGTATTGTTCACTCAATTCGGTTTGGAGGAATTGGGCATGTGAAAATTGGAAGATTTTTTTTCCTTCACCTATGATTTCATAAGAATTTCA ]
[+] EMBL AU174215 [ CCGCCGGCGATGGGGCNCGACATGGGCGGCGGCTGGTGCGTCGACGGCGACGGCGACGGCCTCGCCGCCGCCGTGGCAGGGTACGAGTTCGTCAGAGAGCCGTGCTACTACACTTACGGCTACGGTTACAACGAGAGCTCACATGTCGAGCAGCCGTACAGCCCACTTTGGGAATAATTGACAAATTAAATAAAATTTAGGAAAAGAGGCAAGAAAAAAAAAAGATATGCAATCATGGACTAAATGAGGGCAGATATATCTTCAGGGTTTCTTCGGATCGTAGGAACTTTAGAAGAAAATTGGAGGATCCAATTCCTACAGGATTTAAGTATTGTTCACTCAATTCGGTTTGGAGGAATTGGGCATGTGAAAATTGGAAGATTTTTTTTCCTTCACCTATGATTTCATAAGAATTTCATAGGAAACTGAACAAAAA]
consensusID : consensus_5429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence
[CCGCTCGATCGATTCTTTCCACGGTTTCCATACTACACGAATGGATCGCCACGTCTTGCAGGGCGGCGCCGGTGGTCATCAGGCGGATGTGGTCGTCGTCGACGGGGCGTTCCTGATGGAGCTGCTCGACGACACGCCGGCGGGGCCTGTGGCGGCGGANAGCAGCCGGAAGNGANCGACGCCGAACGACC]
[+] EMBL OSS1275A [CCGCTCGATCGATTCTTTCCACGGTTTCCATACTACACGAATGGATCGCCACGTCTTGCAGGGCGGCGCCGGTGGTCATCAGGCGGATGTGGTCGTCGTCGACGGGGCGTTCCTGATGGAGCTGCTCGACGACACGCCGGCGGGGCCTGTGGCGGCGGANAGCAGCCGGAAGNGANCGACGCCGAACGACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5429#0 ----TCGATCGATTCTTTCCACGGTTTCCATACTACACGAATGGATCGCCACGTCTTGCA 56
consensus_5429#1 CCGCTCGATCGATTCTTTCCACGGTTTCCATACTACACGAATGGATCGCCACGTCTTGCA 60
********************************************************
consensus_5429#0 GGGCGGCGGCGCCGCCGCCGTGCCGGTGCCGGATCAGTCCAGCTACGGCGGCGGCGGCGC 116
consensus_5429#1 GGGCGGC---------------------------------------------------GC 69
******* **
consensus_5429#0 CGGTGGTCATCAGGCGGATGTGGTCGTCGTCGACGGGGCGTTCCTGATGGAGCTGCTCGA 176
consensus_5429#1 CGGTGGTCATCAGGCGGATGTGGTCGTCGTCGACGGGGCGTTCCTGATGGAGCTGCTCGA 129
************************************************************
consensus_5429#0 CGACACGCCGGCGGCGGCTGTGGCGGCGGAGCAGCAGCCGGAAGGCGACGACGCCGA-CG 235
consensus_5429#1 CGACACGCCGGCGGGGCCTGTGGCGGCGGAN-AGCAGCCGGAAGNGANCGACGCCGAACG 188
************** * ************* ************ ********* **
consensus_5429#0 ACCGGCTGAGCCGCGTCATGCGGTCCCTCGAGGCCGAGCTCGGCGGCGCCGGGGCTGCCC 295
consensus_5429#1 ACC--------------------------------------------------------- 191
***
consensus_5429#0 CGGCGCCGACGTCGGCGCCGCCGTTGGGGTCCTCCTCCGGCGACGGCGGCTCGCCGGCGA 355
consensus_5429#1 ------------------------------------------------------------
consensus_5429#0 GCGGCGACGGCGGCAGGCTGGATCAGCTGGATGACGTGCTGTCGCTGTCCGACTTCGACG 415
consensus_5429#1 ------------------------------------------------------------
consensus_5429#0 GTGGTGGCAGCAGCCGGCCGGGCTCGTGCTCGGCGCCGCCGTTCGAGTACTGGGCGCGGG 475
consensus_5429#1 ------------------------------------------------------------
consensus_5429#0 CGGAGTTGCCGCCGGCGATGGGGCACGACATGGGCGGCGGCTGGTGCGTCGACGGCGACG 535
consensus_5429#1 ------------------------------------------------------------
consensus_5429#0 GCGACGGCCTCGCCGCCGCCGTGGCAGGGTACGAGTTCGTCAGAGAGCCGTGCTACTACA 595
consensus_5429#1 ------------------------------------------------------------
consensus_5429#0 CTTACGGCTACGGTTACAACGAGAGCTCACATGTCGAGCAGCCGTACAGCCCACTTTGGG 655
consensus_5429#1 ------------------------------------------------------------
consensus_5429#0 AATAATTGACAAATTAAATAAAATTTAGGAAAAGAGGCAAGAAAAAAAAAAGATATGCAA 715
consensus_5429#1 ------------------------------------------------------------
consensus_5429#0 TCATGGACTAAATGAGGGCAGATATATCTTCAGGGTTTCTTCGGATCGTAGGAACTTTAG 775
consensus_5429#1 ------------------------------------------------------------
consensus_5429#0 AAGAAAATTGGTGGATCCAATTCCTACAGGATTTAAGTATTGTTCACTCAATTCGGTTTG 835
consensus_5429#1 ------------------------------------------------------------
consensus_5429#0 GAGGAATTGGGCATGTGAAAATTGGAAGATTTTTTTTCCTTCACCTATGATTTCATAAGA 895
consensus_5429#1 ------------------------------------------------------------
consensus_5429#0 ATTTCATAGGAAACTGAACAAAAA 919
consensus_5429#1 ------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||