cluster # 5430

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Oryza sativa
cluster # 5430 cluster # 5430 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5430#0 length = 411 sequences # 1

consensus_5430#1 length = 386 sequences # 1
consensus_5430#2 length = 297 sequences # 1

consensusID : consensus_5430#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [TACGCAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACGGCCGGGTTTTTTTTTTTCCCCATCCCATCCAATCCAAAAACTTAAAAACCCTTTTAATTTCGGGCAACAAAAAACTGTTTTTTTTTCCCACCAAAATTTTATGGGGGCCTCGGGGGGCCCCCAAATAACACCTTTAAAACAAACCTCAATTTTTTAACGAAACCTCCCCCCCAAAAGGGGATCTTTTTTGGGCCCAAACCTTTAAAACTTATAAACCCAGGGGGGAGGGGGGCCCCCCCCCTCAATTAAACCTTGGGGGAACCAAAAAGCGATTTCTTTTTTCCCGTTGCCCACGGAGCCCCCCCCAGG]

[+] EMBL CF322035             [TACGCAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACGGCCGGGTTTTTTTTTTTCCCCATCCCATCCAATCCAAAAACTTAAAAACCCTTTTAATTTCGGGCAACAAAAAACTGTTTTTTTTTCCCACCAAAATTTTATGGGGGCCTCGGGGGGCCCCCAAATAACACCTTTAAAACAAACCTCAATTTTTTAACGAAACCTCCCCCCCAAAAGGGGATCTTTTTTGGGCCCAAACCTTTAAAACTTATAAACCCAGGGGGGAGGGGGGCCCCCCCCCTCAATTAAACCTTGGGGGAACCAAAAAGCGATTTCTTTTTTCCCGTTGCCCACGGAGCCCCCCCCAGG]




>consensus_5430#0
TACGCAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACGGCCGGGTTTTTTTTTTTC
CCCATCCCATCCAATCCAAAAACTTAAAAACCCTTTTAATTTCGGGCAACAAAAAACTGT
TTTTTTTTCCCACCAAAATTTTATGGGGGCCTCGGGGGGCCCCCAAATAACACCTTTAAA
ACAAACCTCAATTTTTTAACGAAACCTCCCCCCCAAAAGGGGATCTTTTTTGGGCCCAAA
CCTTTAAAACTTATAAACCCAGGGGGGAGGGGGGCCCCCCCCCTCAATTAAACCTTGGGG
GAACCAAAAAGCGATTTCTTTTTTCCCGTTGCCCACGGAGCCCCCCCCAGG

consensusID : consensus_5430#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 386
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACCGCCTGCTATTTTTTTTTCCCCCTCCCCTCCAATCCAAAAACTTAAAAACCCTTTTAATTTCAGGCAACATTTAACTGGGATTGTTTCACACCAAAATTTTATGGGGGACTCAGGGGGCCCCCAAATAACACCTTTAAAACAAAACTCAAATTTTTAACGAAAACTCCCCCCCAAAAGGGGATCTTTTTTTGGCCCAAACCTTTAAAACTCATAAATCCAGGGGGGAAGGGTGCTCCCCCACTCAATTAAACCTTTAGGGAACCAAAAAGCGATTTTTTTTTTCCCGTTGTCCACGGAGCCCCCCCCATGGAAAAAATTCC]

[+] EMBL CF318889             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACCGCCTGCTATTTTTTTTTCCCCCTCCCCTCCAATCCAAAAACTTAAAAACCCTTTTAATTTCAGGCAACATTTAACTGGGATTGTTTCACACCAAAATTTTATGGGGGACTCAGGGGGCCCCCAAATAACACCTTTAAAACAAAACTCAAATTTTTAACGAAAACTCCCCCCCAAAAGGGGATCTTTTTTTGGCCCAAACCTTTAAAACTCATAAATCCAGGGGGGAAGGGTGCTCCCCCACTCAATTAAACCTTTAGGGAACCAAAAAGCGATTTTTTTTTTCCCGTTGTCCACGGAGCCCCCCCCATGGAAAAAATTCC]




>consensus_5430#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACA
AAAACCGCCTGCTATTTTTTTTTCCCCCTCCCCTCCAATCCAAAAACTTAAAAACCCTTT
TAATTTCAGGCAACATTTAACTGGGATTGTTTCACACCAAAATTTTATGGGGGACTCAGG
GGGCCCCCAAATAACACCTTTAAAACAAAACTCAAATTTTTAACGAAAACTCCCCCCCAA
AAGGGGATCTTTTTTTGGCCCAAACCTTTAAAACTCATAAATCCAGGGGGGAAGGGTGCT
CCCCCACTCAATTAAACCTTTAGGGAACCAAAAAGCGATTTTTTTTTTCCCGTTGTCCAC
GGAGCCCCCCCCATGGAAAAAATTCC

consensusID : consensus_5430#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 297
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACTGCCTGCTTTTTTTTTTTTCCCTTCCCATCCAATCCAAAAACTTAAAAACCCTTTTAATTTCGGGCAACATTTAACTGGGTTTGTTTCCCACCAAAATTTTATGGGGGACTCAGGGGGCCCCCAAATAACACCTTTGAAACAAAACTCAATTTTTTAACAAAACCTCCCCCCCAAAAGGGGATCGTTTTTTGGCCCAATTTTTACTCCTTCAACCCTTTTCAGGGCCCAAGG]

[+] EMBL CF316950             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACTGCCTGCTTTTTTTTTTTTCCCTTCCCATCCAATCCAAAAACTTAAAAACCCTTTTAATTTCGGGCAACATTTAACTGGGTTTGTTTCCCACCAAAATTTTATGGGGGACTCAGGGGGCCCCCAAATAACACCTTTGAAACAAAACTCAATTTTTTAACAAAACCTCCCCCCCAAAAGGGGATCGTTTTTTGGCCCAATTTTTACTCCTTCAACCCTTTTCAGGGCCCAAGG]




>consensus_5430#2
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACA
AAAACTGCCTGCTTTTTTTTTTTTCCCTTCCCATCCAATCCAAAAACTTAAAAACCCTTT
TAATTTCGGGCAACATTTAACTGGGTTTGTTTCCCACCAAAATTTTATGGGGGACTCAGG
GGGCCCCCAAATAACACCTTTGAAACAAAACTCAATTTTTTAACAAAACCTCCCCCCCAA
AAGGGGATCGTTTTTTGGCCCAATTTTTACTCCTTCAACCCTTTTCAGGGCCCAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5430#0      TACGCAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_5430#1      ------------------------------------TTTTTTTTTTTTTTTTTTTTTTTT 24
consensus_5430#2      ------------------------------------TTTTTTTTTTTTTTTTTTTTTTTT 24
                                                          ************************

consensus_5430#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACGGCCGGGTTTTTTTTTTTC 120
consensus_5430#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACCGCCTGCTATTTTTTTTTC 84
consensus_5430#2      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACTGCCTGCTTTTTTTTTTTT 84
                      ***************************************** *** * * ********* 

consensus_5430#0      CCCATCCCATCCAATCCAAAAACTTAAAAACCCTTTTAATTTCGGGCAACAAAAAACTGT 180
consensus_5430#1      CCCCTCCCCTCCAATCCAAAAACTTAAAAACCCTTTTAATTTCAGGCAACATTTAACTGG 144
consensus_5430#2      CCCTTCCCATCCAATCCAAAAACTTAAAAACCCTTTTAATTTCGGGCAACATTTAACTGG 144
                      *** **** ********************************** *******   ***** 

consensus_5430#0      TTTTTTTTCCCACCAAAATTTTATGGGGGCCTCGGGGGGCCCCCAAATAACACCTTTAAA 240
consensus_5430#1      GATTGTTTCACACCAAAATTTTATGGGGGACTCAGGGGGCCCCCAAATAACACCTTTAAA 204
consensus_5430#2      GTTTGTTTCCCACCAAAATTTTATGGGGGACTCAGGGGGCCCCCAAATAACACCTTTGAA 204
                        ** **** ******************* *** *********************** **

consensus_5430#0      ACAAACCTCAATTTTTTAACGAAACCTCCCCCCCAAAAGGGGATCTTTTTTGGGCCCAAA 300
consensus_5430#1      ACAAAACTCAAATTTTTAACGAAAACTCCCCCCCAAAAGGGGATCTTTTTTTGGCCCAAA 264
consensus_5430#2      ACAAAACTCAATTTTTTAACAAAACCTCCCCCCCAAAAGGGGATCGTTTTTTGGCCCAA- 263
                      ***** ***** ******** *** ******************** ***** ******* 

consensus_5430#0      CCTTTAAAACTTATAAACCCAGGGGGGAGGGGGGCCCCCCCCCTCAATTAAACCTTGGGG 360
consensus_5430#1      CCTTTAAAACTCATAAATCCAGGGGGGAAGGGTGCTCCCCCACTCAATTAAACCTTTAGG 324
consensus_5430#2      TTTTTACTCCTTCAACCCTTTTCAGGGCCCAAGG-------------------------- 297
                        ****   **   *         ***      *                          

consensus_5430#0      GAACCAAAAAGCGATTTCTTTTTTCCCGTTGCCCACGGAGCCCCCCCCAGG--------- 411
consensus_5430#1      GAACCAAAAAGCGATTTTTTTTTTCCCGTTGTCCACGGAGCCCCCCCCATGGAAAAAATT 384
consensus_5430#2      ------------------------------------------------------------
                                                                                  

consensus_5430#0      --
consensus_5430#1      CC 386
consensus_5430#2      --