These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [TACGCAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACGGCCGGGTTTTTTTTTTTCCCCATCCCATCCAATCCAAAAACTTAAAAACCCTTTTAATTTCGGGCAACAAAAAACTGTTTTTTTTTCCCACCAAAATTTTATGGGGGCCTCGGGGGGCCCCCAAATAACACCTTTAAAACAAACCTCAATTTTTTAACGAAACCTCCCCCCCAAAAGGGGATCTTTTTTGGGCCCAAACCTTTAAAACTTATAAACCCAGGGGGGAGGGGGGCCCCCCCCCTCAATTAAACCTTGGGGGAACCAAAAAGCGATTTCTTTTTTCCCGTTGCCCACGGAGCCCCCCCCAGG] [+] EMBL CF322035 [TACGCAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACGGCCGGGTTTTTTTTTTTCCCCATCCCATCCAATCCAAAAACTTAAAAACCCTTTTAATTTCGGGCAACAAAAAACTGTTTTTTTTTCCCACCAAAATTTTATGGGGGCCTCGGGGGGCCCCCAAATAACACCTTTAAAACAAACCTCAATTTTTTAACGAAACCTCCCCCCCAAAAGGGGATCTTTTTTGGGCCCAAACCTTTAAAACTTATAAACCCAGGGGGGAGGGGGGCCCCCCCCCTCAATTAAACCTTGGGGGAACCAAAAAGCGATTTCTTTTTTCCCGTTGCCCACGGAGCCCCCCCCAGG] consensusID : consensus_5430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACCGCCTGCTATTTTTTTTTCCCCCTCCCCTCCAATCCAAAAACTTAAAAACCCTTTTAATTTCAGGCAACATTTAACTGGGATTGTTTCACACCAAAATTTTATGGGGGACTCAGGGGGCCCCCAAATAACACCTTTAAAACAAAACTCAAATTTTTAACGAAAACTCCCCCCCAAAAGGGGATCTTTTTTTGGCCCAAACCTTTAAAACTCATAAATCCAGGGGGGAAGGGTGCTCCCCCACTCAATTAAACCTTTAGGGAACCAAAAAGCGATTTTTTTTTTCCCGTTGTCCACGGAGCCCCCCCCATGGAAAAAATTCC] [+] EMBL CF318889 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACCGCCTGCTATTTTTTTTTCCCCCTCCCCTCCAATCCAAAAACTTAAAAACCCTTTTAATTTCAGGCAACATTTAACTGGGATTGTTTCACACCAAAATTTTATGGGGGACTCAGGGGGCCCCCAAATAACACCTTTAAAACAAAACTCAAATTTTTAACGAAAACTCCCCCCCAAAAGGGGATCTTTTTTTGGCCCAAACCTTTAAAACTCATAAATCCAGGGGGGAAGGGTGCTCCCCCACTCAATTAAACCTTTAGGGAACCAAAAAGCGATTTTTTTTTTCCCGTTGTCCACGGAGCCCCCCCCATGGAAAAAATTCC] consensusID : consensus_5430#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACTGCCTGCTTTTTTTTTTTTCCCTTCCCATCCAATCCAAAAACTTAAAAACCCTTTTAATTTCGGGCAACATTTAACTGGGTTTGTTTCCCACCAAAATTTTATGGGGGACTCAGGGGGCCCCCAAATAACACCTTTGAAACAAAACTCAATTTTTTAACAAAACCTCCCCCCCAAAAGGGGATCGTTTTTTGGCCCAATTTTTACTCCTTCAACCCTTTTCAGGGCCCAAGG] [+] EMBL CF316950 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACTGCCTGCTTTTTTTTTTTTCCCTTCCCATCCAATCCAAAAACTTAAAAACCCTTTTAATTTCGGGCAACATTTAACTGGGTTTGTTTCCCACCAAAATTTTATGGGGGACTCAGGGGGCCCCCAAATAACACCTTTGAAACAAAACTCAATTTTTTAACAAAACCTCCCCCCCAAAAGGGGATCGTTTTTTGGCCCAATTTTTACTCCTTCAACCCTTTTCAGGGCCCAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5430#0 TACGCAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_5430#1 ------------------------------------TTTTTTTTTTTTTTTTTTTTTTTT 24 consensus_5430#2 ------------------------------------TTTTTTTTTTTTTTTTTTTTTTTT 24 ************************ consensus_5430#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACGGCCGGGTTTTTTTTTTTC 120 consensus_5430#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACCGCCTGCTATTTTTTTTTC 84 consensus_5430#2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAAAACTGCCTGCTTTTTTTTTTTT 84 ***************************************** *** * * ********* consensus_5430#0 CCCATCCCATCCAATCCAAAAACTTAAAAACCCTTTTAATTTCGGGCAACAAAAAACTGT 180 consensus_5430#1 CCCCTCCCCTCCAATCCAAAAACTTAAAAACCCTTTTAATTTCAGGCAACATTTAACTGG 144 consensus_5430#2 CCCTTCCCATCCAATCCAAAAACTTAAAAACCCTTTTAATTTCGGGCAACATTTAACTGG 144 *** **** ********************************** ******* ***** consensus_5430#0 TTTTTTTTCCCACCAAAATTTTATGGGGGCCTCGGGGGGCCCCCAAATAACACCTTTAAA 240 consensus_5430#1 GATTGTTTCACACCAAAATTTTATGGGGGACTCAGGGGGCCCCCAAATAACACCTTTAAA 204 consensus_5430#2 GTTTGTTTCCCACCAAAATTTTATGGGGGACTCAGGGGGCCCCCAAATAACACCTTTGAA 204 ** **** ******************* *** *********************** ** consensus_5430#0 ACAAACCTCAATTTTTTAACGAAACCTCCCCCCCAAAAGGGGATCTTTTTTGGGCCCAAA 300 consensus_5430#1 ACAAAACTCAAATTTTTAACGAAAACTCCCCCCCAAAAGGGGATCTTTTTTTGGCCCAAA 264 consensus_5430#2 ACAAAACTCAATTTTTTAACAAAACCTCCCCCCCAAAAGGGGATCGTTTTTTGGCCCAA- 263 ***** ***** ******** *** ******************** ***** ******* consensus_5430#0 CCTTTAAAACTTATAAACCCAGGGGGGAGGGGGGCCCCCCCCCTCAATTAAACCTTGGGG 360 consensus_5430#1 CCTTTAAAACTCATAAATCCAGGGGGGAAGGGTGCTCCCCCACTCAATTAAACCTTTAGG 324 consensus_5430#2 TTTTTACTCCTTCAACCCTTTTCAGGGCCCAAGG-------------------------- 297 **** ** * *** * consensus_5430#0 GAACCAAAAAGCGATTTCTTTTTTCCCGTTGCCCACGGAGCCCCCCCCAGG--------- 411 consensus_5430#1 GAACCAAAAAGCGATTTTTTTTTTCCCGTTGTCCACGGAGCCCCCCCCATGGAAAAAATT 384 consensus_5430#2 ------------------------------------------------------------ consensus_5430#0 -- consensus_5430#1 CC 386 consensus_5430#2 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||