These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 769 fasta sequence [AACTCATCCACACAATATCCACCAACGCATCCAGTATCCACAAGCCATCTATCATCAACGCATCGGCCCATCGATCAACACACAACGCAACCATCCATCCTCGACGCAGCCATCCCTCGTCATTAACACATCCATCATCCAGCACCGAAGCGACAGCACACGCGCGGCCGGAGCACACCCGGCGGTGGCGAGCAGCTTCGGACGAACCGGCGTCCGGCAGGGGAGCACGAGGAGGGAGATGGAATCGATGGTCTTCCAAGGCAAGTGTGCCAAACCAAACAAGCAAAATCTCAGGTTGCCTGACCAGGCAAAGCACATGCACTTCTCCGATGTTTCTCAGGCACCTAAATTTCTCAGGCACAGCTCCCAGGGCACCAACCAAACAGGCCCTAGATCGGTGACCGGCGGCCGGCGGCATCCGTGCAGGCGACGGCGGCTATGGACGACCGGCAGCCGGCGGCACTTCGTGTGGGTGACGACGGCTTTCGATCTACGTCAACAAATATCGGCGACCGGCGGCCGGCGGTCTCCCATCGCATGATCGGATCGGCGATTGGCGACTGGGCGCGTGGCGGCAGCACCCGAAGGACGACAGGACGACCGTCGGCCTCACATACACACACGTCGCACGGGCGGCGTGGCGGCAGCGACGGGGAGATAGCAAGNTAGCAAATGCAAGCATGCTAATTAAGCTAATTATGGTGGCAACATGGCCGACCAATCAGAAGACGACACATCATCAAAATGCTNTAGTACCATGCAACAAGTC] [+] EMBL CA765116 [AACTCATCCACACAATATCCACCAACGCATCCAGTATCCACAAGCCATCTATCATCAACGCATCGGCCCATCGATCAACACACAACGCAACCATCCATCCTCGACGCAGCCATCCCTCGTCATTAACACATCCATCATCCAGCACCGAAGCGACAGCACACGCGCGGCCGGAGCACACCCGGCGGTGGCGAGCAGCTTCGGACGAACCGGCGTCCGGCAGGGGAGCACGAGGAGGGAGATGGAATCGATGGTCTTCCAAGGCAAGTGTGCCAAACCAAACAAGCAAAATCTCAGGTTGCCTGACCAGGCAAAGCACATGCACTTCTCCGATGTTTCTCAGGCACCTAAATTTCTCAGGCACAGCTCCCAGGGCACCAACCAAACAGGCCCTAGATCGGTGACCGGCGGCCGGCGGCATCCGTGCAGGCGACGGCGGCTATGGACGACCGGCAGCCGGCGGCACTTCGTGTGGGTGACGACGGCTTTCGATCTACGTCAACAAATATCGGCGACCGGCGGCCGGCGGTCTCCCATCGCATGATCGGATCGGCGATTGGCGACTGGGCGCGTGGCGGCAGCACCCGAAGGACGACAGGACGACCGTCGGCCTCACATACACACACGTCGCACGGGCGGCGTGGCGGCAGCGACGGGGAGATAGCAAGNTAGCAAATGCAAGCATGCTAATTAAGCTAATTATGGTGGCAACATGGCCGACCAATCAGAAGACGACACATCATCAAAATGCTNTAGTACCATGCAACAAGTC] consensusID : consensus_544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence [AACTTCTCCACACATTCATAGACCACGCATCTAGCATCCACAAGCGATCGACACACAACGCAGCCATCCATCCTCGACGCGGCCATCCATCCTCAACACAATCTTCCCTCGTCATCAACACATCCATCATCCAGCACCGGAGCAACAGCGCGTGCGCGGCCGGAGCACACCGACGGTGGCGAGCGGCTTCGGACGAACCGGCGTCCGGCAGGGGAGCACGAGGAGGGAGATGGAATCGATGGTCTTCCAAGGTAAAATTAATTAAGATCTGTTTCCTTCTTATTTCATATGTAGCACGTACATACGCATGCATGGAGAGGCATCAACTAGAGTATGGAGTAGTACACTCGTGCGGCCAAGTCGATGTGCGCTGGCGTCATGGCGCCGGATGACGGCAGCGGCTATGGAGAACACCTCTTTTGGTTGGTTCTCGTCGTCAGGGCGCACGGATCGCTGCCGGCGCTCTCACACACACATCTACATCATCATCACAACCATGCATGGAGAACGTGAAGCGAAGACGACGAGACGACCACAAGCAGCTTAATGGAGGTTCTCTTACAGGCCTAAACCTGCGGAGGTAATTAACTGGGAGCTTATCGAGGCCCCAGGAACCAGGAGACCACATCGCACAAGTTAGATCTGTCCAATGACAAATTATGGAGCGCACATACATATATATTACATTGGGAATTTATATTTATGATCNTTTAAGATTAATAAAGAGGATGG] [+] EMBL CA765200 [AACTTCTCCACACATTCATAGACCACGCATCTAGCATCCACAAGCGATCGACACACAACGCAGCCATCCATCCTCGACGCGGCCATCCATCCTCAACACAATCTTCCCTCGTCATCAACACATCCATCATCCAGCACCGGAGCAACAGCGCGTGCGCGGCCGGAGCACACCGACGGTGGCGAGCGGCTTCGGACGAACCGGCGTCCGGCAGGGGAGCACGAGGAGGGAGATGGAATCGATGGTCTTCCAAGGTAAAATTAATTAAGATCTGTTTCCTTCTTATTTCATATGTAGCACGTACATACGCATGCATGGAGAGGCATCAACTAGAGTATGGAGTAGTACACTCGTGCGGCCAAGTCGATGTGCGCTGGCGTCATGGCGCCGGATGACGGCAGCGGCTATGGAGAACACCTCTTTTGGTTGGTTCTCGTCGTCAGGGCGCACGGATCGCTGCCGGCGCTCTCACACACACATCTACATCATCATCACAACCATGCATGGAGAACGTGAAGCGAAGACGACGAGACGACCACAAGCAGCTTAATGGAGGTTCTCTTACAGGCCTAAACCTGCGGAGGTAATTAACTGGGAGCTTATCGAGGCCCCAGGAACCAGGAGACCACATCGCACAAGTTAGATCTGTCCAATGACAAATTATGGAGCGCACATACATATATATTACATTGGGAATTTATATTTATGATCNTTTAAGATTAATAAAGAGGATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_544#0 AACTCATCCACACAATATCCACCAACGCATCCAGTATCCACAAGCCATCTATCATCAACG 60 consensus_544#1 AACTTCTCCACACATTCATAGACCACGCATCTAGCATCCACAAGCGATCGACACACAACG 60 **** ******** * * ******* ** ********** *** * ***** consensus_544#0 CATCGGCCCATCGATCAACACACAACGCAACCATCCATCCTCGACGCAGCCATCCCTCGT 120 consensus_544#1 CAGCCATCCATC--------CTCGACGCGGCCATCCATCCTCAACACAATCTTCCCTCGT 112 ** * ***** * * **** ************ ** ** * ******** consensus_544#0 CATTAACACATCCATCATCCAGCACCGAAGCGACAGCACACGCGCGGCCGGAGCACACCC 180 consensus_544#1 CATCAACACATCCATCATCCAGCACCGGAGCAACAGCGCGTGCGCGGCCGGAGCACACC- 171 *** *********************** *** ***** * ****************** consensus_544#0 GGCGGTGGCGAGCAGCTTCGGACGAACCGGCGTCCGGCAGGGGAGCACGAGGAGGGAGAT 240 consensus_544#1 GACGGTGGCGAGCGGCTTCGGACGAACCGGCGTCCGGCAGGGGAGCACGAGGAGGGAGAT 231 * *********** ********************************************** consensus_544#0 GGAATCGATGGTCTTCCAAGGCAAGTGTGCCAAACCAAACAAGCAAAATCTCAGGTTGCC 300 consensus_544#1 GGAATCGATGGTCTTCCAAGGTAA------------AATTAATTAAGATCT---GTTTCC 276 ********************* ** ** ** ** **** *** ** consensus_544#0 TGACCAGGCAAAGCACATGCACTTCTCCGATGTTTCTCAGGCACCTAAATTTCTCAGGCA 360 consensus_544#1 TTCTTATTT----CATATGTAGCACGTACATA---CGCATGCATGGAGAGGCATCAACTA 329 * * ** *** * * ** * ** *** * * *** * consensus_544#0 CAGCTCCCAGGGCACCAACCAAACAGGCCCTAGATCGGTGACCGGCGGCCGGCGGCATCC 420 consensus_544#1 GAGTATGGAGTAGTACACTCGTGCGG---CCAAGTCGATGTGCGCTGGC-GTCATGGCGC 385 ** ** ** * * * * * *** ** ** *** * * * consensus_544#0 GTGCAGGCGACGGCGGCTATGGACGAC-CGGCAGCCGGCGGCACTTCGT-GTGGGTGACG 478 consensus_544#1 CGGATGACGGCAGCGGCTATGGAGAACACCTCTTTTGGTTGGTTCTCGTCGTCAGGGCGC 445 * * ** * *********** ** * * ** * **** ** * * consensus_544#0 ACGGCTTTCGATCTACGTCAACAAATATCGGCGACCGGCGGC-CGGCGGTCTCCCATCGC 537 consensus_544#1 ACGGATCGCTGCCGGCGCTCTCACACACACATCTACATCATCATCACAACCATGCATGGA 505 **** * * * ** ** * * * * * * * *** * consensus_544#0 ATGATCGGATCGGCGATTGGCGACTGGGCGCGTGGCGGCAGCACCCGAAGGACGACAGGA 597 consensus_544#1 GAACGTGAAGCGAAGA----CGACGAGACGACCACAAGCAGCTTAATGGAGGTTCTCTTA 561 * * ** ** **** * ** ***** * * consensus_544#0 CGACCGTCGGCCTCACATACACACACGTCGCACGGGCGGCGTGGCGGCAGCGACGGGGAG 657 consensus_544#1 CAGGCCTAAACCTGCGGAGGTAATTAACTGGGAGCTTATCGAGGCCCCAGGAACCAGGAG 621 * * * *** * * * ** *** *** ** **** consensus_544#0 ATAGCAAGNTAGCAAATGCAAGCATGCTAATTAAGCTAATTATGGTGGCAACATGGCCGA 717 consensus_544#1 ACCACATCGCA-CAAGTTAGATCTGTCCAATGA--CAAATTATGGAGCGCACATACATAT 678 * ** * *** * * * * *** * * ******** * **** consensus_544#0 CCAATCAGAAGACGACACATCATCAAAATGCTNTAGTACCATGCAACAAGTC-- 769 consensus_544#1 ATATTACATTGGGAATTTATATTTATGATCNTTTAAGATTAATAAAGAGGATGG 732 * * * * ** * * ** * ** * * ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||