cluster # 5448

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Oryza sativa
cluster # 5448 cluster # 5448 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5448#0 length = 605 sequences # 3

consensusID : consensus_5448#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 605
fasta sequence

                              [CCTGACGCGGGACCGCGCGGCGGACGCGGCGCGCATCGCGCGCTGCTGGAGGAGGGGGACGTGGTGGTGTNCCCGGAGGGACGACGTGCCGGGAGCCGTACCNACTGCGGTTCTCGGCGCTGTTCGCGGACTGACGGCGAGGATCGTNCCGGTGGCGGTGGAGGCGAGGCAGGGGACGTACTATAGGTCGACGGCGAGGGGGTGGAAGTTCCTGGACCCTTACTTCTTCTACATGAACCCGCGGCCGGGGTACGAGGTGACGTTCCTNCCGGCGCTGAGGCCGGAGGAGACGTGCGTCGCCGGCGGGAGGAGCGCGGTGGAGGTGGCGAACCACGTGCAGAGGGTGATC-NCCA-AGGAGCTAGGGTT-CCAATGCACCACGCTCACCAGGAAGGACAAGTACATGAAGCTCGCCGGCAACGACGGCCGGGTCGCCGCCGCCGCCGACAAGCCCAAGGCCAATTGATTAGTCCATCCATCTTTCTAAAGATGGCAGGCCACCTACCAGCTGATTAGGCCACTTGGCGCCCCTAAGTTGGTATATAAATCTAATGTCATTTGAGAAAAAGAAAAGAGAAAAAAAAGGGGCTGTCATACCAAAAAAAAAA]

[+] EMBL AU070900             [CCTGACGCGGGACCGCGCGGCGGACGCGGCGCGCATCGCGCGCTGCTGGAGGAGGGGGACGTGGTGGTGTNCCCGGAGGGACGACGTGCCGGGAGCCGTACCNACTGCGGTTCTCGGCGCTGTTCGCGGACTGACGGCGAGGATCGTNCCGGTGGCGGTGGAGGCGAGGCAGGGGACGTACTATAGGTCGACGGCGAGGGGGTGGAAGTTCCTGGACCCTTACTTCTTCTACATGAACCCGCGGCCGGGGTACGAGGTGACGTTCCTNCCGGCGCTGAGGCCGGAGGAGACGTGCGTCGCCGGCGGGAGGAGCGCGGTGGAGGTAGCGAACCACGTGCAGAGGGTGATC NCCA AGGAGCTAGGGTT CCAATGCACCACGCTCACCAGGAAGGACAAGTACATGAAGCTCGCCGGCAACGACGGCCGGGTCGCCGCCGCCGCCGACAAGCCCAAGGCCAATTGATTAGTCCATCCATCT                                                                                                                               ]
[+] EMBL BI810947             [                                                                                                                                                                                                                                                                                  CTGAGGCCGGAGGAGACGTGCGTCGCCGGCGGGAGGAGCCCGGTGGA GTGCCGAACCACGT CAGAGGGTGATCGCCCACAGGAGCTAGGGTTCCCAATGCACCACGCTCACCAGGAAGGACAAGTACATGAAGCTCGCCGGCAACGACGGCC GGTCGCCGCCGCCGCCGACAAGCCCAAGGCCCATTGATTAGTCCATCCATCTTTCTAAAGATGGCAGGCCACCTACCAGCTGATTAGGCCACTTGGCGCCCCTAAGTTGGTATATAAATCTAATGTCATTTGAGAAAAAGAAAAGAGAAAAAAAAGGGGCTGTCATACCAAAAAAAAAA]
[+] EMBL AU081365             [                                                                                                                                                                                                                                                                                                                                nGGTGGCGAACCACGTGCAGAGGGTGATC GCCA AGGAGCTNGGGTT CCAATGCACCACGCTCACCAGGAAGGACAAGTACATGAAGCTCGCCGGCAACGACGGCCGGGTCGCCGCCGCCGCCNACAAGCCCAAGGCCAATTGATTAGTCCATCCATCTTTCTAAAGATGGCAGGCCACCTACCAGCTGATTAGGCCACTTGGCGCCCCTAAGTTGGTATATAAATCTAATGTCATTTGAGAAAAAGAAAAa                                  ]




>consensus_5448#0
CCTGACGCGGGACCGCGCGGCGGACGCGGCGCGCATCGCGCGCTGCTGGAGGAGGGGGAC
GTGGTGGTGTNCCCGGAGGGACGACGTGCCGGGAGCCGTACCNACTGCGGTTCTCGGCGC
TGTTCGCGGACTGACGGCGAGGATCGTNCCGGTGGCGGTGGAGGCGAGGCAGGGGACGTA
CTATAGGTCGACGGCGAGGGGGTGGAAGTTCCTGGACCCTTACTTCTTCTACATGAACCC
GCGGCCGGGGTACGAGGTGACGTTCCTNCCGGCGCTGAGGCCGGAGGAGACGTGCGTCGC
CGGCGGGAGGAGCGCGGTGGAGGTGGCGAACCACGTGCAGAGGGTGATCNCCAAGGAGCT
AGGGTTCCAATGCACCACGCTCACCAGGAAGGACAAGTACATGAAGCTCGCCGGCAACGA
CGGCCGGGTCGCCGCCGCCGCCGACAAGCCCAAGGCCAATTGATTAGTCCATCCATCTTT
CTAAAGATGGCAGGCCACCTACCAGCTGATTAGGCCACTTGGCGCCCCTAAGTTGGTATA
TAAATCTAATGTCATTTGAGAAAAAGAAAAGAGAAAAAAAAGGGGCTGTCATACCAAAAA
AAAAA

clustalw multiple alignements is not computed in this case