cluster # 5449

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Oryza sativa
cluster # 5449 cluster # 5449 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5449#0 length = 604 sequences # 1

consensus_5449#1 length = 592 sequences # 1
consensus_5449#2 length = 492 sequences # 1

consensusID : consensus_5449#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence

                              [TCTCAAAATCAAGCGGAAGCAATGGAGGAGAGGAAGTGGAGATCAACGTCGTCGTGGCCGCCGATGCTGCCGGTGATCATGATGGCCATGGCGATCTTGGCGGTGTCCTTCAACGGCGCCGCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCCACGGTGTGCTCGTCGCCGCCGCCGCCGGCGTCGGGGAACTATAATCCGGTGCTGTCGCCACCGAAGGGCACCGGCAGCGGCAGCGTTGGTGGGTCGTCGTCGTCGCCTTCGGCGCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTCTTCACCTCCGGCGGCAGCAGCCATGGCTGCGCGGCGGCGCTGCTCCTGCCGCCGCTTGTGTCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCACAGTAGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCACCTATATATTTTTCTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTACCTGTTTAATACGAAACATGCAG]

[+] EMBL AK064766             [TCTCAAAATCAAGCGGAAGCAATGGAGGAGAGGAAGTGGAGATCAACGTCGTCGTGGCCGCCGATGCTGCCGGTGATCATGATGGCCATGGCGATCTTGGCGGTGTCCTTCAACGGCGCCGCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCCACGGTGTGCTCGTCGCCGCCGCCGCCGGCGTCGGGGAACTATAATCCGGTGCTGTCGCCACCGAAGGGCACCGGCAGCGGCAGCGTTGGTGGGTCGTCGTCGTCGCCTTCGGCGCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTCTTCACCTCCGGCGGCAGCAGCCATGGCTGCGCGGCGGCGCTGCTCCTGCCGCCGCTTGTGTCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCACAGTAGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCACCTATATATTTTTCTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTACCTGTTTAATACGAAACATGCAG]




>consensus_5449#0
TCTCAAAATCAAGCGGAAGCAATGGAGGAGAGGAAGTGGAGATCAACGTCGTCGTGGCCG
CCGATGCTGCCGGTGATCATGATGGCCATGGCGATCTTGGCGGTGTCCTTCAACGGCGCC
GCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCC
ACGGTGTGCTCGTCGCCGCCGCCGCCGGCGTCGGGGAACTATAATCCGGTGCTGTCGCCA
CCGAAGGGCACCGGCAGCGGCAGCGTTGGTGGGTCGTCGTCGTCGCCTTCGGCGCCGTTG
GCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTCTTCACCTCCGGCGGCAGC
AGCCATGGCTGCGCGGCGGCGCTGCTCCTGCCGCCGCTTGTGTCCCTCGCCGTCGCCGCT
CTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCACAGTAGCTAGCTAGCTATAGCT
AGTGGGTTAATTAGCTGCTTGTTTAATTTGCACCTATATATTTTTCTTTTGCTGATCCCG
ATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTACCTGTTTAATACGAAACAT
GCAG

consensusID : consensus_5449#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 592
fasta sequence

                              [AGAAGTGGAGATCAACGTCGTCGTGGCCGCCGATGCTGCCGGTGATCATGATGGCCATGGCGATCTTGGCGGTGTCCTTCAACGGCGCCGCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCCACGGTGTGCTCGTCGCCGCCGCCGCCGGCGTCGTCGTCGTCGTCGTCGTCGGGGAACTATAATCCGGTGCTGTCGCCACCGAAGGGCACCGGCAGCGGCAGCGTTGGTGGGTCGTCGTCGTCGCCTTCGGCGCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTCTTCACCTCCGGCGGCAGCAGCCATGGCTGCGCGGCGGCGCTGCTCCTGCCGCCGCTTGTGTCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCACAGTAGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCACCTATATATTTTTCTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTACCTGTTTAATACGAAACATGCAGT]

[-] EMBL BI305848             [AGAAGTGGAGATCAACGTCGTCGTGGCCGCCGATGCTGCCGGTGATCATGATGGCCATGGCGATCTTGGCGGTGTCCTTCAACGGCGCCGCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCCACGGTGTGCTCGTCGCCGCCGCCGCCGGCGTCGTCGTCGTCGTCGTCGTCGGGGAACTATAATCCGGTGCTGTCGCCACCGAAGGGCACCGGCAGCGGCAGCGTTGGTGGGTCGTCGTCGTCGCCTTCGGCGCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTCTTCACCTCCGGCGGCAGCAGCCATGGCTGCGCGGCGGCGCTGCTCCTGCCGCCGCTTGTGTCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCACAGTAGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCACCTATATATTTTTCTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTACCTGTTTAATACGAAACATGCAGT]




>consensus_5449#1
AGAAGTGGAGATCAACGTCGTCGTGGCCGCCGATGCTGCCGGTGATCATGATGGCCATGG
CGATCTTGGCGGTGTCCTTCAACGGCGCCGCCGCCCAGCCGCCGCCGGACACCAACGTGC
TGTGCGTCAGCAAGTGCGGGACGTGCCCCACGGTGTGCTCGTCGCCGCCGCCGCCGGCGT
CGTCGTCGTCGTCGTCGTCGGGGAACTATAATCCGGTGCTGTCGCCACCGAAGGGCACCG
GCAGCGGCAGCGTTGGTGGGTCGTCGTCGTCGCCTTCGGCGCCGTTGGCGAAGGGAGGGC
AGCCAGGCGGCAGCAACTACTACTACTTCTTCACCTCCGGCGGCAGCAGCCATGGCTGCG
CGGCGGCGCTGCTCCTGCCGCCGCTTGTGTCCCTCGCCGTCGCCGCTCTGTCGCAGTGAT
CGATCGATCGTGTCCAGTATGATCACAGTAGCTAGCTAGCTATAGCTAGTGGGTTAATTA
GCTGCTTGTTTAATTTGCACCTATATATTTTTCTTTTGCTGATCCCGATCGAGTTGTTGA
TATTTCGTGAATTACTTACTTATTATTACCTGTTTAATACGAAACATGCAGT

consensusID : consensus_5449#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [GCCGATGCTGCCGGTGATCATGATGGCCATGGCGATTTTGGCGGTGTCCTTCAACGGGGCCGCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCCACGGTGTGCTTGTCGCCCCCCCCGCCGGCGTTGTCGTCGTCGTCGTCGTCGCCTTCGGCCCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTTTTCACCTCCGGCGGCAGCAACCATGGCTGCGCGGCGGCGCTGCTCCTGCCCCCGCTTGTGTCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCCCAGTAGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCCCCTAAATATTTTTTTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTACCTGTTTAATACGAAACATGCAGT]

[-] EMBL BI306449             [GCCGATGCTGCCGGTGATCATGATGGCCATGGCGATTTTGGCGGTGTCCTTCAACGGGGCCGCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCCACGGTGTGCTTGTCGCCCCCCCCGCCGGCGTTGTCGTCGTCGTCGTCGTCGCCTTCGGCCCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTTTTCACCTCCGGCGGCAGCAACCATGGCTGCGCGGCGGCGCTGCTCCTGCCCCCGCTTGTGTCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCCCAGTAGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCCCCTAAATATTTTTTTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTACCTGTTTAATACGAAACATGCAGT]




>consensus_5449#2
GCCGATGCTGCCGGTGATCATGATGGCCATGGCGATTTTGGCGGTGTCCTTCAACGGGGC
CGCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCC
CACGGTGTGCTTGTCGCCCCCCCCGCCGGCGTTGTCGTCGTCGTCGTCGTCGCCTTCGGC
CCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTTTTCACCTCCGG
CGGCAGCAACCATGGCTGCGCGGCGGCGCTGCTCCTGCCCCCGCTTGTGTCCCTCGCCGT
CGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCCCAGTAGCTAGCTAGC
TATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCCCCTAAATATTTTTTTTTTGCT
GATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTACCTGTTTAATAC
GAAACATGCAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5449#1      -------------------------------AGAAGTGGAGATCAACGTCGTCGTGGCCG 29
consensus_5449#2      -----------------------------------------------------------G 1
consensus_5449#0      TCTCAAAATCAAGCGGAAGCAATGGAGGAGAGGAAGTGGAGATCAACGTCGTCGTGGCCG 60
                                                                                 *

consensus_5449#1      CCGATGCTGCCGGTGATCATGATGGCCATGGCGATCTTGGCGGTGTCCTTCAACGGCGCC 89
consensus_5449#2      CCGATGCTGCCGGTGATCATGATGGCCATGGCGATTTTGGCGGTGTCCTTCAACGGGGCC 61
consensus_5449#0      CCGATGCTGCCGGTGATCATGATGGCCATGGCGATCTTGGCGGTGTCCTTCAACGGCGCC 120
                      *********************************** ******************** ***

consensus_5449#1      GCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCC 149
consensus_5449#2      GCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCC 121
consensus_5449#0      GCCGCCCAGCCGCCGCCGGACACCAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCC 180
                      ************************************************************

consensus_5449#1      ACGGTGTGCTCGTCGCCGCCGCCGCCGGCGTCGTCGTCGTCGTCGTCGTCGGGGAACTAT 209
consensus_5449#2      ACGGTGTGCTTGTCGCCCCCCCCGCCGGCGTTGTCGTCGTCGTCGTCGTCG--------- 172
consensus_5449#0      ACGGTGTGCTCGTCGCCGCCGCCGCCGGCGTCGGGGAACTATAATCCGGTG--------- 231
                      ********** ****** ** ********** *  *   *      **  *         

consensus_5449#1      AATCCGGTGCTGTCGCCACCGAAGGGCACCGGCAGCGGCAGCGTTGGTGGGTCGTCGTCG 269
consensus_5449#2      ------------------------------------------------------------
consensus_5449#0      ---------CTGTCGCCACCGAAGGGCACCGGCAGCGGCAGCGTTGGTGGGTCGTCGTCG 282
                                                                                  

consensus_5449#1      TCGCCTTCGGCGCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTC 329
consensus_5449#2      ---CCTTCGGCCCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTT 229
consensus_5449#0      TCGCCTTCGGCGCCGTTGGCGAAGGGAGGGCAGCCAGGCGGCAGCAACTACTACTACTTC 342
                         ******** *********************************************** 

consensus_5449#1      TTCACCTCCGGCGGCAGCAGCCATGGCTGCGCGGCGGCGCTGCTCCTGCCGCCGCTTGTG 389
consensus_5449#2      TTCACCTCCGGCGGCAGCAACCATGGCTGCGCGGCGGCGCTGCTCCTGCCCCCGCTTGTG 289
consensus_5449#0      TTCACCTCCGGCGGCAGCAGCCATGGCTGCGCGGCGGCGCTGCTCCTGCCGCCGCTTGTG 402
                      ******************* ****************************** *********

consensus_5449#1      TCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCACAGT 449
consensus_5449#2      TCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCCCAGT 349
consensus_5449#0      TCCCTCGCCGTCGCCGCTCTGTCGCAGTGATCGATCGATCGTGTCCAGTATGATCACAGT 462
                      ******************************************************* ****

consensus_5449#1      AGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCACCTATATATT 509
consensus_5449#2      AGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCCCCTAAATATT 409
consensus_5449#0      AGCTAGCTAGCTATAGCTAGTGGGTTAATTAGCTGCTTGTTTAATTTGCACCTATATATT 522
                      ************************************************* **** *****

consensus_5449#1      TTTCTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTAC 569
consensus_5449#2      TTTTTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTAC 469
consensus_5449#0      TTTCTTTTGCTGATCCCGATCGAGTTGTTGATATTTCGTGAATTACTTACTTATTATTAC 582
                      *** ********************************************************

consensus_5449#1      CTGTTTAATACGAAACATGCAGT 592
consensus_5449#2      CTGTTTAATACGAAACATGCAGT 492
consensus_5449#0      CTGTTTAATACGAAACATGCAG- 604
                      **********************