These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 900 fasta sequence [GCCGCGGCGATTCCCCCACACGGCACCACCAAATCCGCCGCCGCCGCCGCCGTCGCCGTCGCCGCCGCCGCTTGCACCGGTTGCTCCGGGCGGGTGTCGGGATGCTGGCGAGGGTCTCCCGCCTGGGGCTCCATGCCCTGCGCCGCGCCACTGCGCCAGGTCAAAATTCACTCGCTTCAAGGAGGCACGAAGCAGAAGCTGTTACCTCTCATGTGAACCATTTGGGGAAGACTTTCTTCTGTTCGAACACAAATGCTACATCCAGTGATAGGAGCAGCGAGTCAGAAGCTAAGATATCTGTGACTTTTGTTGATAAGGATGGCGAGGAAAAGCTTGTTAAAGTACCTATAGGAATGTCAATGCTAGAGGCAGCACATGAGAATGACATAGAACTTGAAGGGGCATGTGAGGGCTCTCTTGCATGTTCGACATGCCATGTGTTGTAACGGATGTTGACTACTACAACAAATTGGAAGATCCTGTGGATGAGGAGAACGATATGCTGGACCTTGCATTTGGGCTTACAGAGACATCCCGTCTTGGTTGCCAAGTGATTGCAAGCCCTGAGCTTGATGGAATGCGATTGGCACTGCCATCAGCTACGAGAAATTTTGCAGTTGATGGGTATGTTGCGAAATCACACTGATTTCAACAAAATCATGAAAGGTGGATGTTGGATGACTCCAGTTTTGTAGAATACGAGATATAGTTATTGGCGTATCCTCAATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGATAACTTCCCTTCTCTCTTTTTTCGATGGCAAATATGCCAAATTGCTTTGTAAAACAACACAAGTAAAATCAATTAGAAATATGGATTATTCATTGAAACCTTTTGTGGTGAAAAATATGGC] [+] EMBL AK107833 [GCCGCGGCGATTCCCCCACACGGCACCACCAAATCCGCCGCCGCCGCCGCCGTCGCCGTCGCCGCCGCCGCTTGCACCGGTTGCTCCGGGCGGGTGTCGGGATGCTGGCGAGGGTCTCCCGCCTGGGGCTCCATGCCCTGCGCCGCGCCACTGCGCCAGGTCAAAATTCACTCGCTTCAAGGAGGCACGAAGCAGAAGCTGTTACCTCTCATGTGAACCATTTGGGGAAGACTTTCTTCTGTTCGAACACAAATGCTACATCCAGTGATAGGAGCAGCGAGTCAGAAGCTAAGATATCTGTGACTTTTGTTGATAAGGATGGCGAGGAAAAGCTTGTTAAAGTACCTATAGGAATGTCAATGCTAGAGGCAGCACATGAGAATGACATAGAACTTGAAGGGGCATGTGAGGGCTCTCTTGCATGTTCGACATGCCATGTGTTGTAACGGATGTTGACTACTACAACAAATTGGAAGATCCTGTGGATGAGGAGAACGATATGCTGGACCTTGCATTTGGGCTTACAGAGACATCCCGTCTTGGTTGCCAAGTGATTGCAAGCCCTGAGCTTGATGGAATGCGATTGGCACTGCCATCAGCTACGAGAAATTTTGCAGTTGATGGGTATGTTGCGAAATCACACTGATTTCAACAAAATCATGAAAGGTGGATGTTGGATGACTCCAGTTTTGTAGAATACGAGATATAGTTATTGGCGTATCCTCAATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGATAACTTCCCTTCTCTCTTTTTTCGATGGCAAATATGCCAAATTGCTTTGTAAAACAACACAAGTAAAATCAATTAGAAATATGGATTATTCATTGAAACCTTTTGTGGTGAAAAATATGGC] consensusID : consensus_5456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 208 fasta sequence [ACACTGCATGGACTGAAGGAGTAGAAAGCTTATCCTCAATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGATAACTTCCCTTCTCTCTTTTTTCGATGGCAAATATGCCAAATTGCTTTGTAAAACAACACGAGTAAAATCAATTAGAAATATGGATTATTCATTGAAACCTTTTGTGGTGAAAAAAA] [+] EMBL CF321426 [ACACTGCATGGACTGAAGGAGTAGAAAGCTTATCCTCAATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGATAACTTCCCTTCTCTCTTTTTTCGATGGCAAATATGCCAAATTGCTTTGTAAAACAACACGAGTAAAATCAATTAGAAATATGGATTATTCATTGAAACCTTTTGTGGTGAAAAAA ] [-] EMBL CF321427 [ TGGACTGAAGGAGTAGAAAGCTTATCCTCAATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGATAACTTCCCTTCTCTCTTTTTTCGATGGCAAATATGCCAAATTGCTTTGTAAAACAACACGAGTAAAATCAATTAGAAATATGGATTATTCATTGAAACCTTTTGTGGTGAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5456#0 GCCGCGGCGATTCCCCCACACGGCACCACCAAATCCGCCGCCGCCGCCGCCGTCGCCGTC 60 consensus_5456#1 ------------------------------------------------------------ consensus_5456#0 GCCGCCGCCGCTTGCACCGGTTGCTCCGGGCGGGTGTCGGGATGCTGGCGAGGGTCTCCC 120 consensus_5456#1 ------------------------------------------------------------ consensus_5456#0 GCCTGGGGCTCCATGCCCTGCGCCGCGCCACTGCGCCAGGTCAAAATTCACTCGCTTCAA 180 consensus_5456#1 ------------------------------------------------------------ consensus_5456#0 GGAGGCACGAAGCAGAAGCTGTTACCTCTCATGTGAACCATTTGGGGAAGACTTTCTTCT 240 consensus_5456#1 ------------------------------------------------------------ consensus_5456#0 GTTCGAACACAAATGCTACATCCAGTGATAGGAGCAGCGAGTCAGAAGCTAAGATATCTG 300 consensus_5456#1 ------------------------------------------------------------ consensus_5456#0 TGACTTTTGTTGATAAGGATGGCGAGGAAAAGCTTGTTAAAGTACCTATAGGAATGTCAA 360 consensus_5456#1 ------------------------------------------------------------ consensus_5456#0 TGCTAGAGGCAGCACATGAGAATGACATAGAACTTGAAGGGGCATGTGAGGGCTCTCTTG 420 consensus_5456#1 ------------------------------------------------------------ consensus_5456#0 CATGTTCGACATGCCATGTGTTGTAACGGATGTTGACTACTACAACAAATTGGAAGATCC 480 consensus_5456#1 ------------------------------------------------------------ consensus_5456#0 TGTGGATGAGGAGAACGATATGCTGGACCTTGCATTTGGGCTTACAGAGACATCCCGTCT 540 consensus_5456#1 ------------------------------------------------------------ consensus_5456#0 TGGTTGCCAAGTGATTGCAAGCCCTGAGCTTGATGGAATGCGATTGGCACTGCCATCAGC 600 consensus_5456#1 ------------------------------------------------------------ consensus_5456#0 TACGAGAAATTTTGCAGTTGATGGGTATGTTGCGAAATCACACTGATTTCAACAAAATCA 660 consensus_5456#1 ------------------------------------------------------------ consensus_5456#0 TGAAAGGTGGATGTTGGATGACTCCAGTTTTGTAGAATACGAGATATAGTTATTGGCGTA 720 consensus_5456#1 --------------------------ACACTGCATGGACTGAAGGA--GTAGAAAGCTTA 32 ** * ** * ** ** ** consensus_5456#0 TCCTCAATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGAT 780 consensus_5456#1 TCCTCAATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGAT 92 ************************************************************ consensus_5456#0 AACTTCCCTTCTCTCTTTTTTCGATGGCAAATATGCCAAATTGCTTTGTAAAACAACACA 840 consensus_5456#1 AACTTCCCTTCTCTCTTTTTTCGATGGCAAATATGCCAAATTGCTTTGTAAAACAACACG 152 *********************************************************** consensus_5456#0 AGTAAAATCAATTAGAAATATGGATTATTCATTGAAACCTTTTGTGGTGAAAAATATGGC 900 consensus_5456#1 AGTAAAATCAATTAGAAATATGGATTATTCATTGAAACCTTTTGTGGTGAAAAAAA---- 208 ****************************************************** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||