These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 332 fasta sequence [TGAGGAGGGAGAACCAGTGGGCCTTCGAATGAAAGCCCCCCCCCCCCCCCCAAAAAAAAAAGCAACAACCATCTCATGCGAATGACCAGCAAGGAAGGGGAAGCGCGTCATGTCGAGAAGTTGATCCTGGAGCAGCTATGAACTCTCTGCTTGAACTGTCTTTAAGAAAGTTGTAATTAGGGAAAGTTCGTCGTTAGTTGGTTGGGAGAGCAGACTATTTAGCTGACTCCGTTCTGTTTTGTGCACTCTGGAGCGAGAAGGAAATGATTGCTGGTTGTTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AA750861 [TGAGGAGGGAGAACCAGTGGGCCTTCGAATGAAAGCCCCCCCCCCCCCCCCAAAAAAAAAAGCAACAACCATCTCATGCGAATGACCAGCAAGGAAGGGGAAGCGCGTCATGTCGAGAAGTTGATCCTGGAGCAGCTATGAACTCTCTGCTTGAACTGTCTTTAAGAAAGTTGTAATTAGGGAAAGTTCGTCGTTAGTTGGTTGGGAGAGCAGACTATTTAGCT ] [+] EMBL BP184896 [ CCCCCCCCCAAAAAAAAAGCAACAACCATCTCATGCGAATGACCAGCAAGGAAGGGGAAGCGCGTCATGTCGAGAAGTTGATCCTGGAGCAGCTATGAACTCTCTGCTTGAACTGTCTTTAAGAAAGTTGTAATTAGGGTTAGTTCGTCGTTAGTTGGTTGGGAGAGCAGACTATTTAGCTGACTCCGTTCTGTTTTGTGCACTCTGGAGCGAGAAGGAAATGATTGCTGGTTGTTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_5457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [GAATGACTTCACCCCCGAGGAAGAAGAGGAGGTGAGGAGGGAGAACCAGTGGGCCTTCGAATGAAGNNNCCCCCCCCCCCCCCAAAAAAAAAANCAACCATCTCATGCGAATGACCAGCAAGGAAGGGGAAGTCNCGTCATGTCGAGAAGTTGATCCTGGAGCAGCCTATGACTCTCTGCTTGAACTGTCTTTAGAAGTGTATTAGGGTAGTTCGTCGTTAGTT] [+] EMBL AA750080 [GAATGACTTCACCCCCGAGGAAGAAGAGGAGGTGAGGAGGGAGAACCAGTGGGCCTTCGAATGAAGNNNCCCCCCCCCCCCCCAAAAAAAAAANCAACCATCTCATGCGAATGACCAGCAAGGAAGGGGAAGTCNCGTCATGTCGAGAAGTTGATCCTGGAGCAGCCTATGACTCTCTGCTTGAACTGTCTTTAGAAGTGTATTAGGGTAGTTCGTCGTTAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5457#0 --------------------------------TGAGGAGGGAGAACCAGTGGGCCTTCGA 28 consensus_5457#1 GAATGACTTCACCCCCGAGGAAGAAGAGGAGGTGAGGAGGGAGAACCAGTGGGCCTTCGA 60 **************************** consensus_5457#0 ATGAAAGCCCCCCCCCCCCCCCCAAAAAAAAAAGCAACAACCATCTCATGCGAATGACCA 88 consensus_5457#1 ATGAAGNNNCCCCCCCCCCCCCCAAAAAAAAAANCA---ACCATCTCATGCGAATGACCA 117 ***** ************************ ** ********************* consensus_5457#0 GCAAGGAAGGGGAAG-CGCGTCATGTCGAGAAGTTGATCCTGGAGCAGCTATGAACTCTC 147 consensus_5457#1 GCAAGGAAGGGGAAGTCNCGTCATGTCGAGAAGTTGATCCTGGAGCAGCCTATGACTCTC 177 *************** * ******************************* ****** consensus_5457#0 TGCTTGAACTGTCTTTAAGAAAGTTGTAATTAGGGAAAGTTCGTCGTTAGTTGGTTGGGA 207 consensus_5457#1 TGCTTGAACTGTCTTTAGAAGTGT----ATTAGGGTA-GTTCGTCGTTAGTT-------- 224 ***************** * ** ******* * ************** consensus_5457#0 GAGCAGACTATTTAGCTGACTCCGTTCTGTTTTGTGCACTCTGGAGCGAGAAGGAAATGA 267 consensus_5457#1 ------------------------------------------------------------ consensus_5457#0 TTGCTGGTTGTTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 327 consensus_5457#1 ------------------------------------------------------------ consensus_5457#0 AAAAA 332 consensus_5457#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||