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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5459 cluster # 5459       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5459#0 length = 288 sequences # 1  
consensus_5459#1 length = 273 sequences # 1  
consensus_5459#2 length = 212 sequences # 1  

consensusID : consensus_5459#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence
                              [CTCTCTTCCCCCCCCCCCNTTNGCCCCNGGGTCCAGTTCCATNTAATAAGNTTTTNGTNGAGATGGGCCGAAAGTTNTTNGTTGGTGGAAANTGGAAATGNAANGGGACCANTGATNAGGTGGACAAAATTNTNAAAATTNTGAATGAGGGANANATTGNTTNTANAGATGTTGTTGAGGTGGTTNTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNANCTGNGNCCGGAGATCCAAGTTGCTGCTCAAAATTNTTGGGTNAAGAAGGGNGGGGGTTTNA]

[+] EMBL OSC107631            [CTCTCTTCCCCCCCCCCCNTTNGCCCCNGGGTCCAGTTCCATNTAATAAGNTTTTNGTNGAGATGGGCCGAAAGTTNTTNGTTGGTGGAAANTGGAAATGNAANGGGACCANTGATNAGGTGGACAAAATTNTNAAAATTNTGAATGAGGGANANATTGNTTNTANAGATGTTGTTGAGGTGGTTNTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNANCTGNGNCCGGAGATCCAAGTTGCTGCTCAAAATTNTTGGGTNAAGAAGGGNGGGGGTTTNA]


>consensus_5459#0 CTCTCTTCCCCCCCCCCCNTTNGCCCCNGGGTCCAGTTCCATNTAATAAGNTTTTNGTNG AGATGGGCCGAAAGTTNTTNGTTGGTGGAAANTGGAAATGNAANGGGACCANTGATNAGG TGGACAAAATTNTNAAAATTNTGAATGAGGGANANATTGNTTNTANAGATGTTGTTGAGG TGGTTNTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNANCTGNGNCCGGAGA TCCAAGTTGCTGCTCAAAATTNTTGGGTNAAGAAGGGNGGGGGTTTNA



consensusID : consensus_5459#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence
                              [CTCTCTTCCCCCCCCCCCNGGNGCCCNNGGGTCCAGTTCCATNTAATNAGNTTNTNGTCGAGATGGGCCGAAAGTTNTTNGTTGGTGGNAACTGGAAATGAAANGGGACCANTGATCAGGTGGACAAAATTGTGAAAATTNTGAATGAGGGANAGATTGNTTTTANAGATGTTGTTGAGGTGGTTGTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNAGNTGTGCCCGGAGATCCAAGTTGCTGNTCAGAATTGTTGGGTGAAGA]

[+] EMBL OSC107601            [CTCTCTTCCCCCCCCCCCNGGNGCCCNNGGGTCCAGTTCCATNTAATNAGNTTNTNGTCGAGATGGGCCGAAAGTTNTTNGTTGGTGGNAACTGGAAATGAAANGGGACCANTGATCAGGTGGACAAAATTGTGAAAATTNTGAATGAGGGANAGATTGNTTTTANAGATGTTGTTGAGGTGGTTGTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNAGNTGTGCCCGGAGATCCAAGTTGCTGNTCAGAATTGTTGGGTGAAGA]


>consensus_5459#1 CTCTCTTCCCCCCCCCCCNGGNGCCCNNGGGTCCAGTTCCATNTAATNAGNTTNTNGTCG AGATGGGCCGAAAGTTNTTNGTTGGTGGNAACTGGAAATGAAANGGGACCANTGATCAGG TGGACAAAATTGTGAAAATTNTGAATGAGGGANAGATTGNTTTTANAGATGTTGTTGAGG TGGTTGTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNAGNTGTGCCCGGAGA TCCAAGTTGCTGNTCAGAATTGTTGGGTGAAGA



consensusID : consensus_5459#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 212
fasta sequence
                              [CTCCAGCTCTCTTCCCCCCNCCCCNTTGNCCCCCGGGTCCAGTTCCATNTAATNAGNTTNTNGTCGAGATGGGCCGNAAGTTNTTNGTTGGNGGNAACTGGAAATGCAACGGGNCCACTGATCAGGTGGACAAAATTNTGAAAATTNTGAATGAGGGACANATTGCTTNTANANATGTTGTTGAGGTGGTTGTNAGCCCACCTTATGTGTTC]

[+] EMBL AU097690             [CTCCAGCTCTCTTCCCCCCNCCCCNTTGNCCCCCGGGTCCAGTTCCATNTAATNAGNTTNTNGTCGAGATGGGCCGNAAGTTNTTNGTTGGNGGNAACTGGAAATGCAACGGGNCCACTGATCAGGTGGACAAAATTNTGAAAATTNTGAATGAGGGACANATTGCTTNTANANATGTTGTTGAGGTGGTTGTNAGCCCACCTTATGTGTTC]


>consensus_5459#2 CTCCAGCTCTCTTCCCCCCNCCCCNTTGNCCCCCGGGTCCAGTTCCATNTAATNAGNTTN TNGTCGAGATGGGCCGNAAGTTNTTNGTTGGNGGNAACTGGAAATGCAACGGGNCCACTG ATCAGGTGGACAAAATTNTGAAAATTNTGAATGAGGGACANATTGCTTNTANANATGTTG TTGAGGTGGTTGTNAGCCCACCTTATGTGTTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5459#0      ------CTCTCTTCCCCCCCCCCCNTTNGCCCCNGGGTCCAGTTCCATNTAATAAGNTTT 54
consensus_5459#1      ------CTCTCTTCCCCCCCCCCCNGGNGCCCNNGGGTCCAGTTCCATNTAATNAGNTTN 54
consensus_5459#2      CTCCAGCTCTCTTCCCCCCNCCCCNTTGNCCCCCGGGTCCAGTTCCATNTAATNAGNTTN 60
                            ************* *****    ***  ******************* ***** 

consensus_5459#0      TNGTNGAGATGGGCCGAAAGTTNTTNGTTGGTGGAAANTGGAAATGNAANGGGACCANTG 114
consensus_5459#1      TNGTCGAGATGGGCCGAAAGTTNTTNGTTGGTGGNAACTGGAAATGAAANGGGACCANTG 114
consensus_5459#2      TNGTCGAGATGGGCCGNAAGTTNTTNGTTGGNGGNAACTGGAAATGCAACGGGNCCACTG 120
                      **** *********** ************** ** ** ******** ** *** *** **

consensus_5459#0      ATNAGGTGGACAAAATTNTNAAAATTNTGAATGAGGGANANATTGNTTNTANAGATGTTG 174
consensus_5459#1      ATCAGGTGGACAAAATTGTGAAAATTNTGAATGAGGGANAGATTGNTTTTANAGATGTTG 174
consensus_5459#2      ATCAGGTGGACAAAATTNTGAAAATTNTGAATGAGGGACANATTGCTTNTANANATGTTG 180
                      ** ************** * ****************** * **** ** **** ******

consensus_5459#0      TTGAGGTGGTTNTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNANCTGNGNC 234
consensus_5459#1      TTGAGGTGGTTGTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNAGNTGTGCC 234
consensus_5459#2      TTGAGGTGGTTGTNAGCCCACCTTATGTGTTC---------------------------- 212
                      *********** * ******************                            

consensus_5459#0      CGGAGATCCAAGTTGCTGCTCAAAATTNTTGGGTNAAGAAGGGNGGGGGTTTNA 288
consensus_5459#1      CGGAGATCCAAGTTGCTGNTCAGAATTGTTGGGTGAAGA--------------- 273
consensus_5459#2      ------------------------------------------------------
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)