These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5459#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [CTCTCTTCCCCCCCCCCCNTTNGCCCCNGGGTCCAGTTCCATNTAATAAGNTTTTNGTNGAGATGGGCCGAAAGTTNTTNGTTGGTGGAAANTGGAAATGNAANGGGACCANTGATNAGGTGGACAAAATTNTNAAAATTNTGAATGAGGGANANATTGNTTNTANAGATGTTGTTGAGGTGGTTNTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNANCTGNGNCCGGAGATCCAAGTTGCTGCTCAAAATTNTTGGGTNAAGAAGGGNGGGGGTTTNA] [+] EMBL OSC107631 [CTCTCTTCCCCCCCCCCCNTTNGCCCCNGGGTCCAGTTCCATNTAATAAGNTTTTNGTNGAGATGGGCCGAAAGTTNTTNGTTGGTGGAAANTGGAAATGNAANGGGACCANTGATNAGGTGGACAAAATTNTNAAAATTNTGAATGAGGGANANATTGNTTNTANAGATGTTGTTGAGGTGGTTNTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNANCTGNGNCCGGAGATCCAAGTTGCTGCTCAAAATTNTTGGGTNAAGAAGGGNGGGGGTTTNA] consensusID : consensus_5459#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [CTCTCTTCCCCCCCCCCCNGGNGCCCNNGGGTCCAGTTCCATNTAATNAGNTTNTNGTCGAGATGGGCCGAAAGTTNTTNGTTGGTGGNAACTGGAAATGAAANGGGACCANTGATCAGGTGGACAAAATTGTGAAAATTNTGAATGAGGGANAGATTGNTTTTANAGATGTTGTTGAGGTGGTTGTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNAGNTGTGCCCGGAGATCCAAGTTGCTGNTCAGAATTGTTGGGTGAAGA] [+] EMBL OSC107601 [CTCTCTTCCCCCCCCCCCNGGNGCCCNNGGGTCCAGTTCCATNTAATNAGNTTNTNGTCGAGATGGGCCGAAAGTTNTTNGTTGGTGGNAACTGGAAATGAAANGGGACCANTGATCAGGTGGACAAAATTGTGAAAATTNTGAATGAGGGANAGATTGNTTTTANAGATGTTGTTGAGGTGGTTGTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNAGNTGTGCCCGGAGATCCAAGTTGCTGNTCAGAATTGTTGGGTGAAGA] consensusID : consensus_5459#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence [CTCCAGCTCTCTTCCCCCCNCCCCNTTGNCCCCCGGGTCCAGTTCCATNTAATNAGNTTNTNGTCGAGATGGGCCGNAAGTTNTTNGTTGGNGGNAACTGGAAATGCAACGGGNCCACTGATCAGGTGGACAAAATTNTGAAAATTNTGAATGAGGGACANATTGCTTNTANANATGTTGTTGAGGTGGTTGTNAGCCCACCTTATGTGTTC] [+] EMBL AU097690 [CTCCAGCTCTCTTCCCCCCNCCCCNTTGNCCCCCGGGTCCAGTTCCATNTAATNAGNTTNTNGTCGAGATGGGCCGNAAGTTNTTNGTTGGNGGNAACTGGAAATGCAACGGGNCCACTGATCAGGTGGACAAAATTNTGAAAATTNTGAATGAGGGACANATTGCTTNTANANATGTTGTTGAGGTGGTTGTNAGCCCACCTTATGTGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5459#0 ------CTCTCTTCCCCCCCCCCCNTTNGCCCCNGGGTCCAGTTCCATNTAATAAGNTTT 54 consensus_5459#1 ------CTCTCTTCCCCCCCCCCCNGGNGCCCNNGGGTCCAGTTCCATNTAATNAGNTTN 54 consensus_5459#2 CTCCAGCTCTCTTCCCCCCNCCCCNTTGNCCCCCGGGTCCAGTTCCATNTAATNAGNTTN 60 ************* ***** *** ******************* ***** consensus_5459#0 TNGTNGAGATGGGCCGAAAGTTNTTNGTTGGTGGAAANTGGAAATGNAANGGGACCANTG 114 consensus_5459#1 TNGTCGAGATGGGCCGAAAGTTNTTNGTTGGTGGNAACTGGAAATGAAANGGGACCANTG 114 consensus_5459#2 TNGTCGAGATGGGCCGNAAGTTNTTNGTTGGNGGNAACTGGAAATGCAACGGGNCCACTG 120 **** *********** ************** ** ** ******** ** *** *** ** consensus_5459#0 ATNAGGTGGACAAAATTNTNAAAATTNTGAATGAGGGANANATTGNTTNTANAGATGTTG 174 consensus_5459#1 ATCAGGTGGACAAAATTGTGAAAATTNTGAATGAGGGANAGATTGNTTTTANAGATGTTG 174 consensus_5459#2 ATCAGGTGGACAAAATTNTGAAAATTNTGAATGAGGGACANATTGCTTNTANANATGTTG 180 ** ************** * ****************** * **** ** **** ****** consensus_5459#0 TTGAGGTGGTTNTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNANCTGNGNC 234 consensus_5459#1 TTGAGGTGGTTGTAAGCCCACCTTATGTGTTCCTTCCCGTGGTNAAGAGTNAGNTGTGCC 234 consensus_5459#2 TTGAGGTGGTTGTNAGCCCACCTTATGTGTTC---------------------------- 212 *********** * ****************** consensus_5459#0 CGGAGATCCAAGTTGCTGCTCAAAATTNTTGGGTNAAGAAGGGNGGGGGTTTNA 288 consensus_5459#1 CGGAGATCCAAGTTGCTGNTCAGAATTGTTGGGTGAAGA--------------- 273 consensus_5459#2 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||