Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5461 cluster # 5461       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5461#0 length = 222 sequences # 1  
consensus_5461#1 length = 184 sequences # 1  
consensus_5461#2 length = 158 sequences # 1  

consensusID : consensus_5461#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 222
fasta sequence
                              [GAGCAAGGCATGCAGATAGGAAAACATCATTCGGCGAACTGACCAAACTGTGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAGGTTTATGCTGGTGCCAATGTATGAAATACAGCAAATAAGATGTTTTACTATTCCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGA]

[+] EMBL CF314586             [GAGCAAGGCATGCAGATAGGAAAACATCATTCGGCGAACTGACCAAACTGTGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAGGTTTATGCTGGTGCCAATGTATGAAATACAGCAAATAAGATGTTTTACTATTCCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGA]


>consensus_5461#0 GAGCAAGGCATGCAGATAGGAAAACATCATTCGGCGAACTGACCAAACTGTGTGACGGAG TGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAGGTTT ATGCTGGTGCCAATGTATGAAATACAGCAAATAAGATGTTTTACTATTCCAATAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGA



consensusID : consensus_5461#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 184
fasta sequence
                              [GAGCAAGGCATGCAGATAGGAAAACATATTCGGCGAACTGACCAAACTGTGTTAGGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAGGTTTATGCTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCTGTCATGCCG]

[+] EMBL CF328321             [GAGCAAGGCATGCAGATAGGAAAACATATTCGGCGAACTGACCAAACTGTGTTAGGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAGGTTTATGCTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCTGTCATGCCG]


>consensus_5461#1 GAGCAAGGCATGCAGATAGGAAAACATATTCGGCGAACTGACCAAACTGTGTTAGGTGAC GGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAG GTTTATGCTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCTGTCAT GCCG



consensusID : consensus_5461#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 158
fasta sequence
                              [GAGCAAGGCATGCAGATAGAAAAACATCATTCGGCGAACTGACCAAACTGTGTTAGGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF317451             [GAGCAAGGCATGCAGATAGAAAAACATCATTCGGCGAACTGACCAAACTGTGTTAGGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_5461#2 GAGCAAGGCATGCAGATAGAAAAACATCATTCGGCGAACTGACCAAACTGTGTTAGGTGA CGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5461#0      GAGCAAGGCATGCAGATAGGAAAACATCATTCGGCGAACTGACCAAACTGTGT-----GA 55
consensus_5461#1      GAGCAAGGCATGCAGATAGGAAAACAT-ATTCGGCGAACTGACCAAACTGTGTTAGGTGA 59
consensus_5461#2      GAGCAAGGCATGCAGATAGAAAAACATCATTCGGCGAACTGACCAAACTGTGTTAGGTGA 60
                      ******************* ******* *************************     **

consensus_5461#0      CGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGA 115
consensus_5461#1      CGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGA 119
consensus_5461#2      CGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAAAAAAAA 120
                      ****************************************************** *   *

consensus_5461#0      GGTTTATGCTGGTGCCAATGTATGAAATACAGCAAATAAGATGTTTTACTATTCCAATAA 175
consensus_5461#1      GGTTTATGCTGGTGCCAA-----------------------------------------A 138
consensus_5461#2      AA--------------AA-----------------------------------------A 125
                                      **                                         *

consensus_5461#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGA 222
consensus_5461#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCTGTCATGCCG- 184
consensus_5461#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 158
                      *********************************              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)