cluster # 5461

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Oryza sativa
cluster # 5461 cluster # 5461 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5461#0 length = 222 sequences # 1

consensus_5461#1 length = 184 sequences # 1
consensus_5461#2 length = 158 sequences # 1

consensusID : consensus_5461#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 222
fasta sequence

                              [GAGCAAGGCATGCAGATAGGAAAACATCATTCGGCGAACTGACCAAACTGTGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAGGTTTATGCTGGTGCCAATGTATGAAATACAGCAAATAAGATGTTTTACTATTCCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGA]

[+] EMBL CF314586             [GAGCAAGGCATGCAGATAGGAAAACATCATTCGGCGAACTGACCAAACTGTGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAGGTTTATGCTGGTGCCAATGTATGAAATACAGCAAATAAGATGTTTTACTATTCCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGA]




>consensus_5461#0
GAGCAAGGCATGCAGATAGGAAAACATCATTCGGCGAACTGACCAAACTGTGTGACGGAG
TGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAGGTTT
ATGCTGGTGCCAATGTATGAAATACAGCAAATAAGATGTTTTACTATTCCAATAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGA

consensusID : consensus_5461#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 184
fasta sequence

                              [GAGCAAGGCATGCAGATAGGAAAACATATTCGGCGAACTGACCAAACTGTGTTAGGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAGGTTTATGCTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCTGTCATGCCG]

[+] EMBL CF328321             [GAGCAAGGCATGCAGATAGGAAAACATATTCGGCGAACTGACCAAACTGTGTTAGGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAGGTTTATGCTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCTGTCATGCCG]




>consensus_5461#1
GAGCAAGGCATGCAGATAGGAAAACATATTCGGCGAACTGACCAAACTGTGTTAGGTGAC
GGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAG
GTTTATGCTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCTGTCAT
GCCG

consensusID : consensus_5461#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 158
fasta sequence

                              [GAGCAAGGCATGCAGATAGAAAAACATCATTCGGCGAACTGACCAAACTGTGTTAGGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF317451             [GAGCAAGGCATGCAGATAGAAAAACATCATTCGGCGAACTGACCAAACTGTGTTAGGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5461#2
GAGCAAGGCATGCAGATAGAAAAACATCATTCGGCGAACTGACCAAACTGTGTTAGGTGA
CGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5461#0      GAGCAAGGCATGCAGATAGGAAAACATCATTCGGCGAACTGACCAAACTGTGT-----GA 55
consensus_5461#1      GAGCAAGGCATGCAGATAGGAAAACAT-ATTCGGCGAACTGACCAAACTGTGTTAGGTGA 59
consensus_5461#2      GAGCAAGGCATGCAGATAGAAAAACATCATTCGGCGAACTGACCAAACTGTGTTAGGTGA 60
                      ******************* ******* *************************     **

consensus_5461#0      CGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGA 115
consensus_5461#1      CGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGA 119
consensus_5461#2      CGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAAAAAAAA 120
                      ****************************************************** *   *

consensus_5461#0      GGTTTATGCTGGTGCCAATGTATGAAATACAGCAAATAAGATGTTTTACTATTCCAATAA 175
consensus_5461#1      GGTTTATGCTGGTGCCAA-----------------------------------------A 138
consensus_5461#2      AA--------------AA-----------------------------------------A 125
                                      **                                         *

consensus_5461#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGA 222
consensus_5461#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCTGTCATGCCG- 184
consensus_5461#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 158
                      *********************************