These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5461#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 222 fasta sequence [GAGCAAGGCATGCAGATAGGAAAACATCATTCGGCGAACTGACCAAACTGTGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAGGTTTATGCTGGTGCCAATGTATGAAATACAGCAAATAAGATGTTTTACTATTCCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGA] [+] EMBL CF314586 [GAGCAAGGCATGCAGATAGGAAAACATCATTCGGCGAACTGACCAAACTGTGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAGGTTTATGCTGGTGCCAATGTATGAAATACAGCAAATAAGATGTTTTACTATTCCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGA] consensusID : consensus_5461#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 184 fasta sequence [GAGCAAGGCATGCAGATAGGAAAACATATTCGGCGAACTGACCAAACTGTGTTAGGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAGGTTTATGCTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCTGTCATGCCG] [+] EMBL CF328321 [GAGCAAGGCATGCAGATAGGAAAACATATTCGGCGAACTGACCAAACTGTGTTAGGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGAGGTTTATGCTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCTGTCATGCCG] consensusID : consensus_5461#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 158 fasta sequence [GAGCAAGGCATGCAGATAGAAAAACATCATTCGGCGAACTGACCAAACTGTGTTAGGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF317451 [GAGCAAGGCATGCAGATAGAAAAACATCATTCGGCGAACTGACCAAACTGTGTTAGGTGACGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5461#0 GAGCAAGGCATGCAGATAGGAAAACATCATTCGGCGAACTGACCAAACTGTGT-----GA 55 consensus_5461#1 GAGCAAGGCATGCAGATAGGAAAACAT-ATTCGGCGAACTGACCAAACTGTGTTAGGTGA 59 consensus_5461#2 GAGCAAGGCATGCAGATAGAAAAACATCATTCGGCGAACTGACCAAACTGTGTTAGGTGA 60 ******************* ******* ************************* ** consensus_5461#0 CGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGA 115 consensus_5461#1 CGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAATATCGA 119 consensus_5461#2 CGGAGTGCTGATGTATTTGACAACTGTGGGCAAGTAAGTTGCTTTAATTTTAAAAAAAAA 120 ****************************************************** * * consensus_5461#0 GGTTTATGCTGGTGCCAATGTATGAAATACAGCAAATAAGATGTTTTACTATTCCAATAA 175 consensus_5461#1 GGTTTATGCTGGTGCCAA-----------------------------------------A 138 consensus_5461#2 AA--------------AA-----------------------------------------A 125 ** * consensus_5461#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGA 222 consensus_5461#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCTGTCATGCCG- 184 consensus_5461#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 158 ********************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||