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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2280 fasta sequence
[ACATGAAGCTCGTCAGCATCTACCTCCTAGTGCTCTGCGTGGTCGGAGCCAACGAGCTTCTCGTCGTCGCAGCCAGCGGCAACGACGGCGGCGGCGGCCGGTTCGTCTACTCCGGCTTCGCCGGCGCCAACCTCACCCTCGACGGCACGGCCACGGTCACGCCAGCCGGACTCATCGAGCTGACCAACGGCACGCTCCAGCTCAAAGGCCACGCGTTCCACCCGACGCCGCTCCGCTTCGGCTTCGGCTCCGGCGGCGGCGGCGGTGGCGATGGGGTGGTGGTGAGGTCCTTCTCCGCCTCGTTCGTGTTCGGCATCCTCTCCGCCTACCCGGACATGAGCGCCCACGGCATCGTCTTCCTCGTGTCACCCACCACCGACTTCTCCGCCGCGCTGGCCAGCCAGTACCTCGGCCTCGTCAACGTCACCAGCAACGGCGACGCCCGCAACCGCATCTTCGCCGTCGAGCTCGACACCCTGCAGCAGGACGAGTTCCGCGACATCAACGACAACCACGTCGGCGTCGACATCAACGGCCTCGTCTCCCTCCAGTCCACCAGCGCCGGCTACTACGCCGCCGACATCAACGGCGGCGGCTTCAGGAACCTGACGCTGATAAGCCACGAGGCGATGCGGGTGTGGGTCGACTACGACGCCGGCGACGCCCGGATCGACGTCACCCTGGCTCCGCTCGCCGTCGCCAAGCCCGTCAGGCCGCTGATCTCCGCCGCCTACAACCTGTCGTCGGTGATCACCGACACGGCGTACGTCGGCTTCTCGTCGGCGACGGGCTCGTTCAACTCACGACACTACGTTCTTGGCTGGAGCTTCGCTGTGGACGGCGGCCCCGCTCCGGCGATCGACGTCGCCAAGCTGCCCAAGCTGCCACGGGAGGGCCCCAAGGCTCGGTCCAAGTTCCTTGAGATCTTCCTCCCAATAGCATCTGCGGCCGTCGTCCTCGCCATGGGCATTTTGGTCATTCTACTTGTGCGTAGGCGGAAGCGGTACACTGAGCTACGCGAAGATTGGGAGGTTGAGTTTGGGCCGCATCGGTTCCCCTACAAGGATCTGCACCACGCAACACAAGGATTCGAGAGTAAGTGCCTGCTCGGCGTAGGAGGGTTCGGAAGAGTGTACAAGGGCGTGCTTCCGAATTCTAACGTGGAGATTGCTGTCAAGAGGGTGTCACATGACTCGAGCCAGGGCGTGAAGGAATTCGTCGCGGAGGTTGTCAGCCTAGGCCGTCTCCAGCACTGCAATCTCGTGAGGTTACTTGGCTACTGCAGACGGAAGGGTGAGCTTATGTTAGTATACGAGTATATGTCGAATGGGAGCCTCGATAAATATCTGCATGGCCAAGACAACAAGCCAACTCTAAGTTGGGCTCAGAGGTTTCAGATCATCAAAGACATCGCATCGGGTTTGCTCTACCTTCACGAGGAGTGCGACAAAGTAGTCATCCATCGAGACATCAAGGCAAGTAACGTGCTCCTCGACAACGAGATGAACGCACGGCTAGGTGATTTCGGTCTCGCCAGATTGTACGACCACGGCGAAGACCCACAGAGCACGCATGTCGTCGGCACAATAGGATACCTGGCTCCAGAGCTGGGACGAACCAGCAAGGCGACTCCACTTACCGACGTATTCGCCTTCGGGACCTTCATCCTCGAGGTCACATGTGGACGAAGACCTATCTACCATGACTCCCATGGCACCCAGGTTATGCTGGTTGACTGGGTGTTGGATCATTGGCACAAACAATCTCTTGTTGACACGGTTGATCTGAAGCTCCATGGTGAGTTCGACGTTGGCGAGGCTTGCCTGGTGCTCAAGTTGGGGCTCTTGTGCTCACACCCGTTCATCAACGCGAGACCAGATATGCGACGAGTGATGCAGTATCTGAAGAGAGAGGTGGCTCTGCCTGAGCTGATGCCAACCAGCATGAGCTTTCACATGCTTGCACTGATGCAGAACGACGGGTTCGACTCGTATGTTCAGTCATATCCTTCTTCAAATTCAAAGGGAAACATCAGCACAGCTACCTCTAGCCTCTTGGAAGAAGGATAAGAGAACCATGCCTGTTTCCATTTGGTTAATTAAATCTTTATTATGTTAAAAAAATGCAATTGGGATTACAAGTTCTAACGACTAGTTAATAATTAGGCTGATTGTGTATATGTAATTTTGTGATAGAAAAGTATTTTGGATCCTCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG]
[+] EMBL AK068307 [ACATGAAGCTCGTCAGCATCTACCTCCTAGTGCTCTGCGTGGTCGGAGCCAACGAGCTTCTCGTCGTCGCAGCCAGCGGCAACGACGGCGGCGGCGGCCGGTTCGTCTACTCCGGCTTCGCCGGCGCCAACCTCACCCTCGACGGCACGGCCACGGTCACGCCAGCCGGACTCATCGAGCTGACCAACGGCACGCTCCAGCTCAAAGGCCACGCGTTCCACCCGACGCCGCTCCGCTTCGGCTTCGGCTCCGGCGGCGGCGGCGGTGGCGATGGGGTGGTGGTGAGGTCCTTCTCCGCCTCGTTCGTGTTCGGCATCCTCTCCGCCTACCCGGACATGAGCGCCCACGGCATCGTCTTCCTCGTGTCACCCACCACCGACTTCTCCGCCGCGCTGGCCAGCCAGTACCTCGGCCTCGTCAACGTCACCAGCAACGGCGACGCCCGCAACCGCATCTTCGCCGTCGAGCTCGACACCCTGCAGCAGGACGAGTTCCGCGACATCAACGACAACCACGTCGGCGTCGACATCAACGGCCTCGTCTCCCTCCAGTCCACCAGCGCCGGCTACTACGCCGCCGACATCAACGGCGGCGGCTTCAGGAACCTGACGCTGATAAGCCACGAGGCGATGCGGGTGTGGGTCGACTACGACGCCGGCGACGCCCGGATCGACGTCACCCTGGCTCCGCTCGCCGTCGCCAAGCCCGTCAGGCCGCTGATCTCCGCCGCCTACAACCTGTCGTCGGTGATCACCGACACGGCGTACGTCGGCTTCTCGTCGGCGACGGGCTCGTTCAACTCACGACACTACGTTCTTGGCTGGAGCTTCGCTGTGGACGGCGGCCCCGCTCCGGCGATCGACGTCGCCAAGCTGCCCAAGCTGCCACGGGAGGGCCCCAAGGCTCGGTCCAAGTTCCTTGAGATCTTCCTCCCAATAGCATCTGCGGCCGTCGTCCTCGCCATGGGCATTTTGGTCATTCTACTTGTGCGTAGGCGGAAGCGGTACACTGAGCTACGCGAAGATTGGGAGGTTGAGTTTGGGCCGCATCGGTTCCCCTACAAGGATCTGCACCACGCAACACAAGGATTCGAGAGTAAGTGCCTGCTCGGCGTAGGAGGGTTCGGAAGAGTGTACAAGGGCGTGCTTCCGAATTCTAACGTGGAGATTGCTGTCAAGAGGGTGTCACATGACTCGAGCCAGGGCGTGAAGGAATTCGTCGCGGAGGTTGTCAGCCTAGGCCGTCTCCAGCACTGCAATCTCGTGAGGTTACTTGGCTACTGCAGACGGAAGGGTGAGCTTATGTTAGTATACGAGTATATGTCGAATGGGAGCCTCGATAAATATCTGCATGGCCAAGACAACAAGCCAACTCTAAGTTGGGCTCAGAGGTTTCAGATCATCAAAGACATCGCATCGGGTTTGCTCTACCTTCACGAGGAGTGCGACAAAGTAGTCATCCATCGAGACATCAAGGCAAGTAACGTGCTCCTCGACAACGAGATGAACGCACGGCTAGGTGATTTCGGTCTCGCCAGATTGTACGACCACGGCGAAGACCCACAGAGCACGCATGTCGTCGGCACAATAGGATACCTGGCTCCAGAGCTGGGACGAACCAGCAAGGCGACTCCACTTACCGACGTATTCGCCTTCGGGACCTTCATCCTCGAGGTCACATGTGGACGAAGACCTATCTACCATGACTCCCATGGCACCCAGGTTATGCTGGTTGACTGGGTGTTGGATCATTGGCACAAACAATCTCTTGTTGACACGGTTGATCTGAAGCTCCATGGTGAGTTCGACGTTGGCGAGGCTTGCCTGGTGCTCAAGTTGGGGCTCTTGTGCTCACACCCGTTCATCAACGCGAGACCAGATATGCGACGAGTGATGCAGTATCTGAAGAGAGAGGTGGCTCTGCCTGAGCTGATGCCAACCAGCATGAGCTTTCACATGCTTGCACTGATGCAGAACGACGGGTTCGACTCGTATGTTCAGTCATATCCTTCTTCAAATTCAAAGGGAAACATCAGCACAGCTACCTCTAGCCTCTTGGAAGAAGGATAAGAGAACCATGCCTGTTTCCATTTGGTTAATTAAATCTTTATTATGTTAAAAAAATGCAATTGGGATTACAAGTTCTAACGACTAGTTAATAATTAGGCTGATTGTGTATATGTAATTTTGTGATAGAAAAGTATTTTGGATCCTCTCAG ]
[+] EMBL CF321601 [ CGTATGTTCAGTCATATCCTTCTTCAAATTCAAAGGGAAACATCAGCACAGCTACCTCTAGCCTCTTGGAAGAAGGATAAGAGAACCATGCCTGTTTCCATTTGGTTAATTAAATCTTTATTATGTTAAAAAAATGCAATTGGGATTACAAGTTCTAACGACTAGTTAATAATTAGGCTGATTGTGTATATGTAATTTTGTGATAGAAAAGTATTTTGGATCCTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG]
consensusID : consensus_5468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence
[ATGGATTGAAGGAGTAAAAAGTTCGACTCGTATGTTCAGTCATATCCTTTTTCAAATTCAAAGGGAAACATCAGCCCAGCTCCCTTTACCCTTTTGGAAAAAGGATAAAAGACCCATCCCTGTTTCCATTTGGTTAATTAAATCTTTATTATGTTAAAAAAATGCATTTGGGATTCCAAGTTTTAACGAATAGTTAATAACAGGGCGGATTGGGTATATGTAATTTGGTAAAAAAAAAGATTTTTGGACCCTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF321602 [ATGGATTGAAGGAGTAAAAAGTTCGACTCGTATGTTCAGTCATATCCTTTTTCAAATTCAAAGGGAAACATCAGCCCAGCTCCCTTTACCCTTTTGGAAAAAGGATAAAAGACCCATCCCTGTTTCCATTTGGTTAATTAAATCTTTATTATGTTAAAAAAATGCATTTGGGATTCCAAGTTTTAACGAATAGTTAATAACAGGGCGGATTGGGTATATGTAATTTGGTAAAAAAAAAGATTTTTGGACCCTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5468#0 ACATGAAGCTCGTCAGCATCTACCTCCTAGTGCTCTGCGTGGTCGGAGCCAACGAGCTTC 60
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 TCGTCGTCGCAGCCAGCGGCAACGACGGCGGCGGCGGCCGGTTCGTCTACTCCGGCTTCG 120
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 CCGGCGCCAACCTCACCCTCGACGGCACGGCCACGGTCACGCCAGCCGGACTCATCGAGC 180
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 TGACCAACGGCACGCTCCAGCTCAAAGGCCACGCGTTCCACCCGACGCCGCTCCGCTTCG 240
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 GCTTCGGCTCCGGCGGCGGCGGCGGTGGCGATGGGGTGGTGGTGAGGTCCTTCTCCGCCT 300
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 CGTTCGTGTTCGGCATCCTCTCCGCCTACCCGGACATGAGCGCCCACGGCATCGTCTTCC 360
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 TCGTGTCACCCACCACCGACTTCTCCGCCGCGCTGGCCAGCCAGTACCTCGGCCTCGTCA 420
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 ACGTCACCAGCAACGGCGACGCCCGCAACCGCATCTTCGCCGTCGAGCTCGACACCCTGC 480
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 AGCAGGACGAGTTCCGCGACATCAACGACAACCACGTCGGCGTCGACATCAACGGCCTCG 540
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 TCTCCCTCCAGTCCACCAGCGCCGGCTACTACGCCGCCGACATCAACGGCGGCGGCTTCA 600
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 GGAACCTGACGCTGATAAGCCACGAGGCGATGCGGGTGTGGGTCGACTACGACGCCGGCG 660
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 ACGCCCGGATCGACGTCACCCTGGCTCCGCTCGCCGTCGCCAAGCCCGTCAGGCCGCTGA 720
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 TCTCCGCCGCCTACAACCTGTCGTCGGTGATCACCGACACGGCGTACGTCGGCTTCTCGT 780
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 CGGCGACGGGCTCGTTCAACTCACGACACTACGTTCTTGGCTGGAGCTTCGCTGTGGACG 840
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 GCGGCCCCGCTCCGGCGATCGACGTCGCCAAGCTGCCCAAGCTGCCACGGGAGGGCCCCA 900
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 AGGCTCGGTCCAAGTTCCTTGAGATCTTCCTCCCAATAGCATCTGCGGCCGTCGTCCTCG 960
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 CCATGGGCATTTTGGTCATTCTACTTGTGCGTAGGCGGAAGCGGTACACTGAGCTACGCG 1020
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 AAGATTGGGAGGTTGAGTTTGGGCCGCATCGGTTCCCCTACAAGGATCTGCACCACGCAA 1080
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 CACAAGGATTCGAGAGTAAGTGCCTGCTCGGCGTAGGAGGGTTCGGAAGAGTGTACAAGG 1140
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 GCGTGCTTCCGAATTCTAACGTGGAGATTGCTGTCAAGAGGGTGTCACATGACTCGAGCC 1200
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 AGGGCGTGAAGGAATTCGTCGCGGAGGTTGTCAGCCTAGGCCGTCTCCAGCACTGCAATC 1260
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 TCGTGAGGTTACTTGGCTACTGCAGACGGAAGGGTGAGCTTATGTTAGTATACGAGTATA 1320
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 TGTCGAATGGGAGCCTCGATAAATATCTGCATGGCCAAGACAACAAGCCAACTCTAAGTT 1380
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 GGGCTCAGAGGTTTCAGATCATCAAAGACATCGCATCGGGTTTGCTCTACCTTCACGAGG 1440
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 AGTGCGACAAAGTAGTCATCCATCGAGACATCAAGGCAAGTAACGTGCTCCTCGACAACG 1500
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 AGATGAACGCACGGCTAGGTGATTTCGGTCTCGCCAGATTGTACGACCACGGCGAAGACC 1560
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 CACAGAGCACGCATGTCGTCGGCACAATAGGATACCTGGCTCCAGAGCTGGGACGAACCA 1620
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 GCAAGGCGACTCCACTTACCGACGTATTCGCCTTCGGGACCTTCATCCTCGAGGTCACAT 1680
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 GTGGACGAAGACCTATCTACCATGACTCCCATGGCACCCAGGTTATGCTGGTTGACTGGG 1740
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 TGTTGGATCATTGGCACAAACAATCTCTTGTTGACACGGTTGATCTGAAGCTCCATGGTG 1800
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 AGTTCGACGTTGGCGAGGCTTGCCTGGTGCTCAAGTTGGGGCTCTTGTGCTCACACCCGT 1860
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 TCATCAACGCGAGACCAGATATGCGACGAGTGATGCAGTATCTGAAGAGAGAGGTGGCTC 1920
consensus_5468#1 ------------------------------------------------------------
consensus_5468#0 TGCCTGAGCTGATGCCAACCAGCATGAGCTTTCACATGCTTGCACTGATGCAGAACGACG 1980
consensus_5468#1 ---------------------------------------ATGGATTGAAG--GAGTAAAA 19
** * *** * ** *
consensus_5468#0 GGTTCGACTCGTATGTTCAGTCATATCCTTCTTCAAATTCAAAGGGAAACATCAGCACAG 2040
consensus_5468#1 AGTTCGACTCGTATGTTCAGTCATATCCTTTTTCAAATTCAAAGGGAAACATCAGCCCAG 79
***************************** ************************* ***
consensus_5468#0 CTACCTCTAGCCTCTTGGAAGAAGGATAAGAGAACCATGCCTGTTTCCATTTGGTTAATT 2100
consensus_5468#1 CTCCCTTTACCCTTTTGGAAAAAGGATAAAAGACCCATCCCTGTTTCCATTTGGTTAATT 139
** *** ** *** ****** ******** *** **** *********************
consensus_5468#0 AAATCTTTATTATGTTAAAAAAATGCAATTGGGATTACAAGTTCTAACGACTAGTTAATA 2160
consensus_5468#1 AAATCTTTATTATGTTAAAAAAATGCATTTGGGATTCCAAGTTTTAACGAATAGTTAATA 199
*************************** ******** ****** ****** *********
consensus_5468#0 ATTAGGCTGATTGTGTATATGTAATTTTGTGATAGAAAAGTATTTTGGATCCTCTCAGAA 2220
consensus_5468#1 ACAGGGCGGATTGGGTATATGTAATTTGGTAAAAAAAAAGATTTTTGGACCCTCTCAAAA 259
* *** ***** ************* ** * * ***** ******* ******* **
consensus_5468#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG 2280
consensus_5468#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------- 294
***********************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||