These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1117 fasta sequence [CTTCCTTCCTTTTACTCGCTCGCTCGCTCGCTGGGTGTTCGTCCATTTGCCCCCAAGCCGGAGCTGCGCGACACGAGCAGCAGGAGAGAGAGAGAGAGAGAATGGGCGACCGGGCGTACGTGCCGGCATCGAAGCCGGTGCCGGTGGCGGCGGCGCGGGCGGCGAACGGGGTGGCGAACGGAGGCGGAAGAGGGGTTGGGGGTGGGGGAGGGGGAGGTGCGGCGCGACCGCCGCCCATCGGTGCCAGGGCGCGTGCTCCTGCCGCCGATGTACAAGCAGAAGCCGATGCAAGCTCCGGCTATGCGGATGCGGAGCGATCGCGGGGTGGTGCTGCGCGTTCTGCCTATGGATTACGCTTGTGGTGGTGGGGCTTGGTGTTCTAGAGGTCATCGCGGCTGGGGGTGTTCTACGTTGCGTACCACCCGCAGCTCTCCACCTTCGCCGTCACGTCTCTCCGCCTCGCCGCGCTCAACGTGTCCGACTCCGACGCCGTCACCTCCCGCATCGAGTTCACTGTCACCGCTCGTAACCCTAACGACAAGATCGCCTTCGCGTACGGCGACATCGCGGCCGCGTTCGCCGCGGACGGCGCCGACGTCGGCGACGGCACGGTCCCCGGGTTCGTCCACCCCGCCGGCAACACCACCGTCATCAAGGTGCGACGCCTCCGCCGCCGCCGCCACCGTGGACCCGCTGGTGGCGAACGGCCTCAGATCCAGGAAGTCGCACGCCATGTCGGTGGAGATGGACTCCAAGGTTGGGTTCCTGATCGTCCGCTTCAAGTCCAAGCGTATCAACGTCCGCGTCCTCTGCGCCGGCTTCACTGCCGCCCTCGCCAAGAACACCCCTTCCGCTCCACCGATCGTCGTCGCCGCCGCCCCGTCGCCGGTGAGGTCGGTCGTCAAGGCTCTCTTCTTCCTCTTCGAGCACGACGGACGCCAAGTGTAAGCTCCGGGTCAAGATCTGGATTTGGACATTTTGACGGATTTGACGGTAGAGAAGACTTCCTTCTTCCTTCTTCTACATGTTTTATTCCTCTCTCAATTTCACAACATATATATCTCTCTCTCAACAGTGATATGTGGATTTATTGGAGTATTGTTTATTTGATTTTCTT] [+] EMBL AK067593 [CTTCCTTCCTTTTACTCGCTCGCTCGCTCGCTGGGTGTTCGTCCATTTGCCCCCAAGCCGGAGCTGCGCGACACGAGCAGCAGGAGAGAGAGAGAGAGAGAATGGGCGACCGGGCGTACGTGCCGGCATCGAAGCCGGTGCCGGTGGCGGCGGCGCGGGCGGCGAACGGGGTGGCGAACGGAGGCGGAAGAGGGGTTGGGGGTGGGGGAGGGGGAGGTGCGGCGCGACCGCCGCCCATCGGTGCCAGGGCGCGTGCTCCTGCCGCCGATGTACAAGCAGAAGCCGATGCAAGCTCCGGCTATGCGGATGCGGAGCGATCGCGGGGTGGTGCTGCGCGTTCTGCCTATGGATTACGCTTGTGGTGGTGGGGCTTGGTGTTCTAGAGGTCATCGCGGCTGGGGGTGTTCTACGTTGCGTACCACCCGCAGCTCTCCACCTTCGCCGTCACGTCTCTCCGCCTCGCCGCGCTCAACGTGTCCGACTCCGACGCCGTCACCTCCCGCATCGAGTTCACTGTCACCGCTCGTAACCCTAACGACAAGATCGCCTTCGCGTACGGCGACATCGCGGCCGCGTTCGCCGCGGACGGCGCCGACGTCGGCGACGGCACGGTCCCCGGGTTCGTCCACCCCGCCGGCAACACCACCGTCATCAAGGTGCGACGCCTCCGCCGCCGCCGCCACCGTGGACCCGCTGGTGGCGAACGGCCTCAGATCCAGGAAGTCGCACGCCATGTCGGTGGAGATGGACTCCAAGGTTGGGTTCCTGATCGTCCGCTTCAAGTCCAAGCGTATCAACGTCCGCGTCCTCTGCGCCGGCTTCACTGCCGCCCTCGCCAAGAACACCCCTTCCGCTCCACCGATCGTCGTCGCCGCCGCCCCGTCGCCGGTGAGGTCGGTCGTCAAGGCTCTCTTCTTCCTCTTCGAGCACGACGGACGCCAAGTGTAAGCTCCGGGTCAAGATCTGGATTTGGACATTTTGACGGATTTGACGGTAGAGAAGACTTCCTTCTTCCTTCTTCTACATGTTTTATTCCTCTCTCAATTTCACAACATATATATCTCTCTCTCAACAGTGATATGTGGATTTATTGGAGTATTGTTTATTTGATTTTCTT] consensusID : consensus_5474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 572 fasta sequence [TTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAGCCGGCGCGGGTGGTGCTGCGCGTGCTGCCTGTGGATGACGCTGGTGGTGGTGGGGCTGGTGTTCCTGGGCGCCATCGCGGCGGGGGTGTTCTACGTGGCGTACCACCCGCAGCTCCCCACCTTCGCCGTCACGTCCCTCCGCCTCGCCGCGCTCAACGTGTCCGACTCCGACGCCGTCACCTCCCGCATCGAGTTCACCGTCACCGCCCGCAACCCCAACGACAAGATCGCCGGTGAGGTCGGTCGTCAAGGCCTCCTCCTCCTCCTCGAGCACGACGGACGCCAAGTGTAAGCTCCGGGTCAAGATCTGGATTTGGACATTTTGACGGATTTGACGGTAGAGAAGACTTCCTTCTTCCTTCTTCTTCTTGTTTTTTCCCTCTCTCAATTTTTCAACCTTTTTTTCTCTCTCTCACAGTGTATGTGGATTTATTGGAGTATAGTTTATATGATTTTTTTTTACTCAAAAAAAAAAAAAAAAAA] [+] EMBL AK058772 [TTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAGCCGGCGCGGGTGGTGCTGCGCGTGCTGCCTGTGGATGACGCTGGTGGTGGTGGGGCTGGTGTTCCTGGGCGCCATCGCGGCGGGGGTGTTCTACGTGGCGTACCACCCGCAGCTCCCCACCTTCGCCGTCACGTCCCTCCGCCTCGCCGCGCTCAACGTGTCCGACTCCGACGCCGTCACCTCCCGCATCGAGTTCACCGTCACCGCCCGCAACCCCAACGACAAGATCGCCGGTGAGGTCGGTCGTCAAGGCCTCCTCCTCCTCCTCGAGCACGACGGACGCCAAGTGTAAGCTCCGGGTCAAGATCTGGATTTGGACATTTTGACGGATTTGACGGTAGAGAAGACTTCCTTCTTCCTTCTTCTTCTTGTTTTTTCCCTCTCTCAATTTTTCAACCTTTTTTTCTCTCTCTCACAGTGTATGTGGATTTATTGGAGTATAGTTTATATGATTT ] [+] EMBL AU082961 [ CCTCCTCCTCGAGCACGACGGACGCCAAGTGTAAGCTCCGGGTCAAGATCTGGATTTGGACATTTTNACGGATTTNACGGTAGAGAAGACTTCCTTCTTCCTTCTTCTTCTTGTTTTTTCCCTCTCTCAATTTTTCAACCTTTTTTTCTCTCTCTCACAGTGTATGTGGATTTATTGGAGTATAGTTTATATGATTTTTTTTTACTCAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5474#0 CTTCCTTCCTTTTACTCGCTCGCTCGCTCGCTGGGTGTTCGTCCATTTGCCCCCAAGCCG 60 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 GAGCTGCGCGACACGAGCAGCAGGAGAGAGAGAGAGAGAGAATGGGCGACCGGGCGTACG 120 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 TGCCGGCATCGAAGCCGGTGCCGGTGGCGGCGGCGCGGGCGGCGAACGGGGTGGCGAACG 180 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 GAGGCGGAAGAGGGGTTGGGGGTGGGGGAGGGGGAGGTGCGGCGCGACCGCCGCCCATCG 240 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 GTGCCAGGGCGCGTGCTCCTGCCGCCGATGTACAAGCAGAAGCCGATGCAAGCTCCGGCT 300 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 ATGCGGATGCGGAGCGATCGCGGGGTGGTGCTGCGCGTTCTGCCTATGGATTACGCTTGT 360 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 GGTGGTGGGGCTTGGTGTTCTAGAGGTCATCGCGGCTGGGGGTGTTCTACGTTGCGTACC 420 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 ACCCGCAGCTCTCCACCTTCGCCGTCACGTCTCTCCGCCTCGCCGCGCTCAACGTGTCCG 480 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 ACTCCGACGCCGTCACCTCCCGCATCGAGTTCACTGTCACCGCTCGTAACCCTAACGACA 540 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 AGATCGCCTTCGCGTACGGCGACATCGCG-GCCGCGTTCGCCGCGGACGGCGCCGACGTC 599 consensus_5474#1 -------------------TTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTG-GCC 40 * * * *** * ** *** *** * * consensus_5474#0 GGCGACGGCACGGTCCCCGGGTTCGTCCACCCCGCCGGCAACACCACCGTCATCAAGGTG 659 consensus_5474#1 --CCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGG-GCCGATCCGGGCGGAGCCGGCGCG 97 * * ** * ** ** ** ** * * * * ** * * * consensus_5474#0 CGACGCCTCCGCCGCCGCCGCCACCGTGGACC-CGCTGGTGGCGAACGGCCTCAGATCCA 718 consensus_5474#1 -GGTGGTGCTGCGCGTGCTGCC--TGTGGATGACGCTGGTGGTGGTGGGGCTGGTGTTC- 153 * * * ** ** *** ***** ********* * ** ** * * consensus_5474#0 GGAAGTCGCACGCCATGTCGGTGGAGATGGACTCCAAGGTTGGGTTCCTGA---TCGTCC 775 consensus_5474#1 -----CTGGGCGCCATCGCGGCGGGGGTGTTCTACGTGGCGTACCACCCGCAGCTCCCCA 208 * ****** *** ** * ** ** * ** ** * ** * consensus_5474#0 GCTTCAAGTCCAAGCGTATCAACGTCCGCGTCCTCTGCGCCGGCTTCACTGCCGCCCTCG 835 consensus_5474#1 CCTTCGCCGTCACGTCCCTCCGCCTCGCCGCGCTCAACGTGTCCGACTCCGACGCCGTCA 268 **** ** * ** * ** ** *** ** * * * * **** ** consensus_5474#0 CCAAGAACACCCCTTCCGCT-CCACCGATCGTCGTCGCCGCCGCCCCGTCGCCGGTGAGG 894 consensus_5474#1 CCTCCCGCATCGAGTTCACCGTCACCGCCCGCAACCCCAACGACAAGATCGCCGGTGAGG 328 ** ** * * * * ***** ** * * * * ************ consensus_5474#0 TCGGTCGTCAAGGCTCTCTTCTTCCTCTTCGAGCACGACGGACGCCAAGTGTAAGCTCCG 954 consensus_5474#1 TCGGTCGTCAAGGC-CTCCTCCTCCTCCTCGAGCACGACGGACGCCAAGTGTAAGCTCCG 387 ************** *** ** ***** ******************************** consensus_5474#0 GGTCAAGATCTGGATTTGGACATTTTGACGGATTTGACGGTAGAGAAGACTTCCTTCTTC 1014 consensus_5474#1 GGTCAAGATCTGGATTTGGACATTTTGACGGATTTGACGGTAGAGAAGACTTCCTTCTTC 447 ************************************************************ consensus_5474#0 CTTCTTCTACATGTTTTATTCCTCTCTCAATTTCACAACATATATATCTCTCTCTCAACA 1074 consensus_5474#1 CTTCTTCTTCTTGTTTTTTCCCTCTCTCAATTTTTCAACCTTTTTTTCTCTCTCTCA-CA 506 ******** * ****** * ************* **** * * * *********** ** consensus_5474#0 GTGATATGTGGATTTATTGGAGTATTGTTTATTTGATTTTCTT----------------- 1117 consensus_5474#1 GTG-TATGTGGATTTATTGGAGTATAGTTTATATGATTTTTTTTTACTCAAAAAAAAAAA 565 *** ********************* ****** ******* ** consensus_5474#0 ------- consensus_5474#1 AAAAAAA 572 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||