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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence
[AGAAGATCGTCGCCGGGGAGCGCAAGTTCGAGGACGTCGCCACCGAGGAGTCCGACTGCAACTCCGCCAAGCGTGGGGGTGACCTAGGTCCATTTGAAAGAGGCAAGATGCAGAAGGCTTTTGAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTGATGTGGTTGATACAGACAGTGGGGTGCATATCATACTGAGGACTGCCTGATTACGGCGGCAGTACGGGCCTTCTCAATCTCTCATTCTCTATACACTCCGTCGCTGTCTGCAACTCTGCATATCATATTGAGGCTGTTTGGGGGCAGAAGTATGGGCCTTGTCAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTTACAAACCTGTGCATGTACTCTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTGCTGGAGACATTTGCTCTGGAATGATGCTCAAGACAACCTATGAATATTGATTGTTACAACATGTTTGGAATTAGCTGAACTGAGCAGGAAG]
[+] EMBL AK105321 [AGAAGATCGTCGCCGGGGAGCGCAAGTTCGAGGACGTCGCCACCGAGGAGTCCGACTGCAACTCCGCCAAGCGTGGGGGTGACCTAGGTCCATTTGAAAGAGGCAAGATGCAGAAGGCTTTTGAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTGATGTGGTTGATACAGACAGTGGGGTGCATATCATACTGAGGACTGCCTGATTACGGCGGCAGTACGGGCCTTCTCAATCTCTCATTCTCTATACACTCCGTCGCTGTCTGCAACTCTGCATATCATATTGAGGCTGTTTGGGGGCAGAAGTATGGGCCTTGTCAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTTACAAACCTGTGCATGTACTCTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTGCTGGAGACATTTGCTCTGGAATGATGCTCAAGACAACCTATGAATATTGATTGTTACAACATGTTTGGAATTAGCTGAACTGAGCAGGAAG]
consensusID : consensus_5481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[GGGGTGACCTAGGTCCATTTNAAAAAGGCAAGATGCAGAAGGCTTTTNAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTNATGTGGTTGATACANACAGTGGGGTGCATATCATACTGAGGACTGCCTGATTACGGCGGCAGTACGGGCCTTCTCAATCTCTCATTCTCTANACACTCCGTCGCTGTCTGCAACTCTGCATATCATATTGAGGCTGTTTGGGGGCANAAGTATGGGCCTTGTCAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTTACAAACCTGTGCATGTACTCTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTGCTGGANACATTTGCTCTGGAATGATGCTCAAGACAACCTATGAATATTGATTGTTACAACATGTTTGGAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU174490 [GGGGTGACCTAGGTCCATTTNAAAAAGGCAAGATGCAGAAGGCTTTTNAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTNATGTGGTTGATACANACAGTGGGGTGCATATCATACTGAGGACTGCCTGATTACGGCGGCAGTACGGGCCTTCTCAATCTCTCATTCTCTANACACTCCGTCGCTGTCTGCAACTCTGCATATCATATTGAGGCTGTTTGGGGGCANAAGTATGGGCCTTGTCAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTTACAAACCTGTGCATGTACTCTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTGCTGGANACATTTGCTCTGGAATGATGCTCAAGACAACCTATGAATATTGATTGTTACAACATGTTTGGAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_5481#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[ATTGGTGGGTTGATGTACAGACAGTTTGGGGTGCATATCATACTGTAGGNCTGCCTGATTACGCGGCAGTACAGGGCCTTCTCAATCTCTCATTCTCTATACACTCACGTCGCTGTCTGCAACGTCGGCAGTATCATATTGAGCTGTTTGGGGGCAGAAGTATGGCCCTTGTCAAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTGTACAAACCTGTGCATGTACTTCGTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTCTGGAGACATTTGCTCTGGAATGATGGCTCAAGACAACCTAGGAATATGGATGGTTACAACATGTTNGGAA]
[+] EMBL BQ908759 [ATTGGTGGGTTGATGTACAGACAGTTTGGGGTGCATATCATACTGTAGGNCTGCCTGATTACGCGGCAGTACAGGGCCTTCTCAATCTCTCATTCTCTATACACTCACGTCGCTGTCTGCAACGTCGGCAGTATCATATTGAGCTGTTTGGGGGCAGAAGTATGGCCCTTGTCAAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTGTACAAACCTGTGCATGTACTTCGTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTCTGGAGACATTTGCTCTGGAATGATGGCTCAAGACAACCTAGGAATATGGATGGTTACAACATGTTNGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5481#0 AGAAGATCGTCGCCGGGGAGCGCAAGTTCGAGGACGTCGCCACCGAGGAGTCCGACTGCA 60
consensus_5481#1 ------------------------------------------------------------
consensus_5481#2 ------------------------------------------------------------
consensus_5481#0 ACTCCGCCAAGCGTGGGGGTGACCTAGGTCCATTTGAAAGAGGCAAGATGCAGAAGGCTT 120
consensus_5481#1 ---------------GGGGTGACCTAGGTCCATTTNAAAAAGGCAAGATGCAGAAGGCTT 45
consensus_5481#2 ------------------------------------------------------------
consensus_5481#0 TTGAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTGATGTGGTTGATACAGACA 180
consensus_5481#1 TTNAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTNATGTGGTTGATACANACA 105
consensus_5481#2 -----------------------------------ATTGGTGGGTTGATGTACAGACAGT 25
** ** ** * * * * *
consensus_5481#0 GTGGGGTGCATATCATACTG-AGGACTGCCTGATTACGGCGGCAGTAC-GGGCCTTCTCA 238
consensus_5481#1 GTGGGGTGCATATCATACTG-AGGACTGCCTGATTACGGCGGCAGTAC-GGGCCTTCTCA 163
consensus_5481#2 TTGGGGTGCATATCATACTGTAGGNCTGCCTGATTACG-CGGCAGTACAGGGCCTTCTCA 84
******************* *** ************* ********* ***********
consensus_5481#0 ATCTCTCATTCTCTATACACTC-CGTCGCTGTCTGCAAC-TCTGCA-TATCATATTGAGG 295
consensus_5481#1 ATCTCTCATTCTCTANACACTC-CGTCGCTGTCTGCAAC-TCTGCA-TATCATATTGAGG 220
consensus_5481#2 ATCTCTCATTCTCTATACACTCACGTCGCTGTCTGCAACGTCGGCAGTATCATATTGAG- 143
*************** ****** **************** ** *** ************
consensus_5481#0 CTGTTTGGGGGCAGAAGTATGGGCCTTGTCAA-TCTGTATACACTGGGGAAATTGGATGT 354
consensus_5481#1 CTGTTTGGGGGCANAAGTATGGGCCTTGTCAA-TCTGTATACACTGGGGAAATTGGATGT 279
consensus_5481#2 CTGTTTGGGGGCAGAAGTATGGCCCTTGTCAAATCTGTATACACTGGGGAAATTGGATGT 203
************* ******** ********* ***************************
consensus_5481#0 TGGTTATTGCTTCGT-TACAAACCTGTGCATGTACTC--TCGATCTGCGAAAAGTTTATG 411
consensus_5481#1 TGGTTATTGCTTCGT-TACAAACCTGTGCATGTACTC--TCGATCTGCGAAAAGTTTATG 336
consensus_5481#2 TGGTTATTGCTTCGTGTACAAACCTGTGCATGTACTTCGTCGATCTGCGAAAAGTTTATG 263
*************** ******************** *********************
consensus_5481#0 TTTTACTCTTACATTTTGCTGGAGACATTTGCTCTGGAATGATG-CTCAAGACAACCTAT 470
consensus_5481#1 TTTTACTCTTACATTTTGCTGGANACATTTGCTCTGGAATGATG-CTCAAGACAACCTAT 395
consensus_5481#2 TTTTACTCTTACATTTT-CTGGAGACATTTGCTCTGGAATGATGGCTCAAGACAACCTAG 322
***************** ***** ******************** **************
consensus_5481#0 GAATATTGATTGTTACAACATGTTTGGAATTAGCTGAACTGAGCAGGAAG 520
consensus_5481#1 GAATATTGATTGTTACAACATGTTTGGAAAAAAAAAAAAAAAAAAA---- 441
consensus_5481#2 GAATATGGATGGTTACAACATGTTNGGAA--------------------- 351
****** *** ************* ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||