These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5482#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 632 fasta sequence [GCTTCCAAATCGCCCGCAATTTCNCCCCCAAAAACCTCCCCTCCCCCCACCACCACCATTAATAAACCCCTCCTCCTCCTCCTCTTCTTCCTCCTCCGCCTCGCCATCTCACCGCCACCGCCTCCTCACTCACTCACTTCCTGCCACGTCATTCGCGCCATCGATCGCGTCGTCGCCTCAGCTGCCTAGAGGAAGAGGAGGAGTAGAGCTCGTCGTCTCCGCCGCCGCAGCTGGTGCTCGCTGTTGATTTATGTCGCCTGCTCTACCCCCGTTTCTCCATGGTTCTGAGCTCCAGTCGCCGCCAACGGTTTCTTCCTGCTCCCTTCTCATCCTCCTCCTTCAAAATTGGTATACGAGGGGCGCAAGAACACAGCAAAATCCCTTCACGATCTCCAGATTTGGATTTGGGGTGAAATACTTTGGCTTTCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAAATTGCCTTAAGATTTGGTTTGGCTTGAGTGGATCAAGTACAGAATCCGAACTTTTGCAACCTGACATTCTTCTAGTTCACAAAGTCGGCCAGATTTGAGATTTCTCTCGGANATCTCTGTACACACAGGAGCTCTCTTTTGCTCCAGTTTTAAACAGAAGTTGGACA] [+] EMBL AU056307 [GCTTCCAAATCGCCCGCAATTTCNCCCCCAAAAACCTCCCCTCCCCCCACCACCACCATTAATAAACCCCTCCTCCTCCTCCTCTTCTTCCTCCTCCGCCTCGCCATCTCACCGCCACCGCCTCCTCACTCACTCACTTCCTGCCACGTCATTCGCGCCATCGATCGCGTCGTCGCCTCAGCTGCCTAGAGGAAGAGGAGGAGTAGAGCTCGTCGTCTCCGCCGCCGCAGCTGGTGCTCGCTGTTGATTTATGTCGCCTGCTCTACCCCCGTTTCTCCATGGTTCTGAGCTCCAGTCGCCGCCAACGGTTTCTTCCTGCTCCCTTCTCATCCTCCTCCTTCAAAATTGGTATACGAGGGGCGCAAGAACACAGCAAAATCCCTTCACGATCTCCAGATTTGGATTTGGGGTGAAATACTTTGGCTTTCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAAATTGCCTTAAGATTTGGTTTGGCTTGAGTGGATCAAGTACAGAATCCGAACTTTTGCAACCTGACATTCTTCTAGTTCACAAAGTCGGCCAGATTTGAGATTTCTCTCGGANATCTCTGTACACACAGGAGCTCTCTTTTGCTCCAGTTTTAAACAGAAGTTGGACA] [+] EMBL AU166582 [ TCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAAATTGCCTTAAGATTTGGTTTGGCTTGAGTGGATCAAGTACAGAATCCGAACTTTTGCAACCTGACATTCTTCTAGTTCACAAAGTCGGCCAGATTTGAGATTTCTCTCGGACATCTCTGTACACACAGGAGCTCTCTTTTGCTCCAGTTTTAAACAGAAGTTGGACA] consensusID : consensus_5482#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [TTAGCTTTCGCGTCCTCTGTTTCCTTTCTTGATCTCCTCTTTTTTTTTCTTTTCTTTTTCTTTTTACTTTCCTTGATGATGAATTCGAATTCGCTTGTGATGTTGATCGATCCGCTTGTGGTGATGATGCTGGGAGGAGCAGAGAGGAAGAGGAGGAGTAGAGCTCGTCGTCTCCGCCGCCGCAGCTGGTGCTCGCTGTTGATTTATGTCGCCTGCTCTACCCCCGTTTCTCCATGGTTCTGAGCTCCAGTCGCCGCCAACGGTTTCTTCCTGCTCCCTTCTCATCCTCCTCCTTCAAAATTGGTATACGAGGGGCGCAAGAACACAGCAAAATCCCTTCACGATCTCCAGATTTGGATTTGGGGTGAAATACTTTGGCTTTCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAAATTGCCTTAAGATTTGGTAAGTGTTGGCTGTTTTTAAGGCAATATATTATCAGCAAATAACTGCTCTTCCGTATTATAACTTTCCTAGTTTATTTGTACTACTTAAAGAGAACCTTTTCAAGACTAACTTACAGGGCATCATCACAAAACC] [+] EMBL CF306893 [TTAGCTTTCGCGTCCTCTGTTTCCTTTCTTGATCTCCTCTTTTTTTTTCTTTTCTTTTTCTTTTTACTTTCCTTGATGATGAATTCGAATTCGCTTGTGATGTTGATCGATCCGCTTGTGGTGATGATGCTGGGAGGAGCAGAGAGGAAGAGGAGGAGTAGAGCTCGTCGTCTCCGCCGCCGCAGCTGGTGCTCGCTGTTGATTTATGTCGCCTGCTCTACCCCCGTTTCTCCATGGTTCTGAGCTCCAGTCGCCGCCAACGGTTTCTTCCTGCTCCCTTCTCATCCTCCTCCTTCAAAATTGGTATACGAGGGGCGCAAGAACACAGCAAAATCCCTTCACGATCTCCAGATTTGGATTTGGGGTGAAATACTTTGGCTTTCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAAATTGCCTTAAGATTTGGTAAGTGTTGGCTGTTTTTAAGGCAATATATTATCAGCAAATAACTGCTCTTCCGTATTATAACTTTCCTAGTTTATTTGTACTACTTAAAGAGAACCTTTTCAAGACTAACTTACAGGGCATCATCACAAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5482#0 GCTTCCAAATCGCCCGCAATTTCNCCCCCAAAAACCTCCCCTCCCCCCACCACCACCATT 60 consensus_5482#1 ------------------------------TTAGCTTTCGCGTCCTCTGTTTCCTTTCTT 30 * * * * * ** * ** ** consensus_5482#0 AATAAACCCCTCCTCCTCCTCCTCTTCTTCCTCCTCCGCCTCGCCATCTCACCGCCACCG 120 consensus_5482#1 GAT---CTCCTCTTTTTTTTTCTTTTCTTTTTCTTTTTACTT------TCCTTGATGATG 81 ** * **** * * * ** ***** ** * ** ** * * consensus_5482#0 CCTCCTCACTCACTCACTTCCTGCCACGTCATTCGCGCCATCGATCGCGTCGTCGCCTC- 179 consensus_5482#1 AATTCGAATTCGCT-------TGTGATGTTGATCGATCCGCTTGTGGTGATGATGCTGGG 134 * * * ** ** ** * ** *** ** * * * * ** consensus_5482#0 AGCTGCCTAGAGGAAGAGGAGGAGTAGAGCTCGTCGTCTCCGCCGCCGCAGCTGGTGCTC 239 consensus_5482#1 AGGAGCAGAGAGGAAGAGGAGGAGTAGAGCTCGTCGTCTCCGCCGCCGCAGCTGGTGCTC 194 ** ** **************************************************** consensus_5482#0 GCTGTTGATTTATGTCGCCTGCTCTACCCCCGTTTCTCCATGGTTCTGAGCTCCAGTCGC 299 consensus_5482#1 GCTGTTGATTTATGTCGCCTGCTCTACCCCCGTTTCTCCATGGTTCTGAGCTCCAGTCGC 254 ************************************************************ consensus_5482#0 CGCCAACGGTTTCTTCCTGCTCCCTTCTCATCCTCCTCCTTCAAAATTGGTATACGAGGG 359 consensus_5482#1 CGCCAACGGTTTCTTCCTGCTCCCTTCTCATCCTCCTCCTTCAAAATTGGTATACGAGGG 314 ************************************************************ consensus_5482#0 GCGCAAGAACACAGCAAAATCCCTTCACGATCTCCAGATTTGGATTTGGGGTGAAATACT 419 consensus_5482#1 GCGCAAGAACACAGCAAAATCCCTTCACGATCTCCAGATTTGGATTTGGGGTGAAATACT 374 ************************************************************ consensus_5482#0 TTGGCTTTCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAAATTGCCTTAAGATT 479 consensus_5482#1 TTGGCTTTCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAAATTGCCTTAAGATT 434 ************************************************************ consensus_5482#0 TGGTTTGGCTTGAGTGGATCAAGTACAGAATCCGAACTTTTGCAACCTGACATTCTTCTA 539 consensus_5482#1 TGGTAAGTGTTGGCTGTTTTTAAGGCAATAT---ATTATCAGCAAATAACTGCTCTTCCG 491 **** * *** ** * * ** ** * * **** ***** consensus_5482#0 GTTCACAAAGTCGGCCAGATTTGAGATTTCTCTCGGANATCTCTGTACACACAGGAGCTC 599 consensus_5482#1 TATTATAAC-TTTCCTAGTTTATTTGTACTACTTAAAGAGAACCTTTTCAAGACTAACTT 550 * * ** * * ** ** * ** * * * * * * * ** consensus_5482#0 TCTTTTGCTCCAGTTTTAAACAGAAGTTGGACA 632 consensus_5482#1 ACAGG-GCATCATCACAAAACC----------- 571 * ** ** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||