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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1249 fasta sequence
[CCCGTGCGTGCGATTCCGCGTCTGCCGCTGCCGGCCGCCGACCGCCGACCGCCGGTGCGCACCTTCGCCGAGGGAGGAGGAGTCTGTTATCGAGCAATTTCAACAAGGGCGGGGCCTTAATCTCCTCGTGCAGCTTGTAAACCTCAGAGTAGGGGTGGGAAAGAAGTTTGGTGCGTGGATTAAATTAGCTGAAAGAGAAATTTGGGAGATGAGTGAGCTTGCGAACAAGTTCTTGGTTCTTCATCTAGATGGTGAAGGTGGTGGAGCAGATGATACAGAAGAAGCACTGATCCAAACATCTTCCAGCATCAAAGAGGCTGATGCCGGTGAAAATGCGCTGAGTGACACGTTGGTACTAAATTACGATGAAGGATCTCTTGTATCATCATCTGGTGATTACCAGATGCCTTTGGTGTGGATAGACTTGGAAATGACTGGTTTGGATGTTGCAAAGGATCGGATATTGGAGATAGCTTGCATCATAACGGACGGTAAACTTACAAAACAAATAGAGGGCCCTGATTTGGTTATAAATCAGAAGAAAGATCTGTTAGATAACATGGATGAATGGTGCAAAACTCATCATGCAGCTAGTGGATTGACACAGAGAGTACTACAGAGTACGATTTCAGAGCATGACGCAGAGACACAAGTGTTAGATTTTGTTAAGAAGCATGTTGGTTCATCTCCTCCATTAATAGCTGGGAATTCTGTTTATGTGGATTTACTATTTTTGAAGAATTATATGCCGCAGCTTGCAGCCATCTTCTCTCACGTTATTGTTGATGTGAGCAGTATAATGGCTTTGTGCATCAGATGGTACCCCAAAGAAAGGAAGCGAACTCCTCAAAAAGGGAAAAAACATAGGGCAATGAATGATATCAAAGAAAGCATCGCTGAACTGAAATACTACGAGGACAACATTTTCAAACCTCAAAAATCTAAGCAGTAGCTACATGGATGGAGCATGGTGGGCATCTTCATGATGGACAGCAAATCGATTCACATGCTAGCCATGATTGAAAATGGATTTTTCATATCAATATTTCCAAGTGTCACTTTGACCTCGTATTTAAATACGTGTTTTGTTTTCATGTCCATTGATCAGTGCCTGGATGTAAGTATGCCTATGTTATTCACCTGTGAATGGTATTGGATCTATGAGCACGGGAGCCCATCACGGTCAGAGATAGCAGTTATATCCGTGTATTGTCCCATTTTGTCAGGTGATATCCCTTTATATAACTGT]
[+] EMBL AK070377 [CCCGTGCGTGCGATTCCGCGTCTGCCGCTGCCGGCCGCCGACCGCCGACCGCCGGTGCGCACCTTCGCCGAGGGAGGAGGAGTCTGTTATCGAGCAATTTCAACAAGGGCGGGGCCTTAATCTCCTCGTGCAGCTTGTAAACCTCAGAGTAGGGGTGGGAAAGAAGTTTGGTGCGTGGATTAAATTAGCTGAAAGAGAAATTTGGGAGATGAGTGAGCTTGCGAACAAGTTCTTGGTTCTTCATCTAGATGGTGAAGGTGGTGGAGCAGATGATACAGAAGAAGCACTGATCCAAACATCTTCCAGCATCAAAGAGGCTGATGCCGGTGAAAATGCGCTGAGTGACACGTTGGTACTAAATTACGATGAAGGATCTCTTGTATCATCATCTGGTGATTACCAGATGCCTTTGGTGTGGATAGACTTGGAAATGACTGGTTTGGATGTTGCAAAGGATCGGATATTGGAGATAGCTTGCATCATAACGGACGGTAAACTTACAAAACAAATAGAGGGCCCTGATTTGGTTATAAATCAGAAGAAAGATCTGTTAGATAACATGGATGAATGGTGCAAAACTCATCATGCAGCTAGTGGATTGACACAGAGAGTACTACAGAGTACGATTTCAGAGCATGACGCAGAGACACAAGTGTTAGATTTTGTTAAGAAGCATGTTGGTTCATCTCCTCCATTAATAGCTGGGAATTCTGTTTATGTGGATTTACTATTTTTGAAGAATTATATGCCGCAGCTTGCAGCCATCTTCTCTCACGTTATTGTTGATGTGAGCAGTATAATGGCTTTGTGCATCAGATGGTACCCCAAAGAAAGGAAGCGAACTCCTCAAAAAGGGAAAAAACATAGGGCAATGAATGATATCAAAGAAAGCATCGCTGAACTGAAATACTACGAGGACAACATTTTCAAACCTCAAAAATCTAAGCAGTAGCTACATGGATGGAGCATGGTGGGCATCTTCATGATGGACAGCAAATCGATTCACATGCTAGCCATGATTGAAAATGGATTTTTCATATCAATATTTCCAAGTGTCACTTTGACCTCGTATTTAAATACGTGTTTTGTTTTCATGTCCATTGATCAGTGCCTGGATGTAAGTATGCCTATGTTATTCACCTGTGAATGGTATTGGATCTATGAGCACGGGAGCCCATCACGGTCAGAGATAGCAGTTATATCCGTGTATTGTCCCATTTTGTCAGGTGATATCCCTTTATATAACTGT]
consensusID : consensus_5484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence
[GGCGTCCCCCGGCAGCGCTTCCTCCCTAAACCAACCTCAGCCTCGGTTGCTCCGTGCCCGTGCGTGCGATTCCGCGTCTGCCGCTGCCGGCCGCCGACCGCCGACCGCCGGTGCGCACCTTCGCCGAGGGAGGAGGAGTCTGTTATCGAGCAATTTCAACAAGGGCGGGGCCTTAATCTCCTCGTGCAGCTTGTAAACCTCAGAGTAGGGGTGGGAAAGAAGTTTGGTGCGTGGATTAAATTAGCTGAAAGAGAAATTTGGGAGATGAGTGAGCTTGCGAACAAGTTCTTGGTTCTTCATCTAGATGGTGAAGGTGGTGGAGCAGATGATACAGAAGAAGCACTGATCCAAACATCTTCCAGCATCAAAGAGGCTGATGCCGGTGAAAATGCGCTGAGTGACACGTTGGTACTAAATTACGATGAAGGATCTCTTGTATCATCATCTGGTGATTACCAGATGCCTTTGGTGTGGATAGACTTGGAAATGACTGGTTTGGATGTTGCAAAGGATCGGATATTGGAGATAGCTTGCATCATAACGGACGGGCCCTGATTTGGTTATAAATCAGAAGAAAGATCTGTTAGATAACATGGATGAATGGTGCAAAACTCATCATGCAGCTAGTGGATTGACACAGAGAGTACTACAGAGTACGATTTCAGAGCATGACGCAGAGACACAAGTGTTAGATTTTGTTAAGAAGCATGTTGGTTCATCTCCTCCATTAATAGCTGGGAATTCTGTTTATGTGGATTTACTATTTTTGAAGAATTATATGCCGCAGCTTGCAGCCATCTTC]
[+] EMBL CB673773 [GGCGTCCCCCGGCAGCGCTTCCTCCCTAAACCAACCTCAGCCTCGGTTGCTCCGTGCCCGTGCGTGCGATTCCGCGTCTGCCGCTGCCGGCCGCCGACCGCCGACCGCCGGTGCGCACCTTCGCCGAGGGAGGAGGAGTCTGTTATCGAGCAATTTCAACAAGGGCGGGGCCTTAATCTCCTCGTGCAGCTTGTAAACCTCAGAGTAGGGGTGGGAAAGAAGTTTGGTGCGTGGATTAAATTAGCTGAAAGAGAAATTTGGGAGATGAGTGAGCTTGCGAACAAGTTCTTGGTTCTTCATCTAGATGGTGAAGGTGGTGGAGCAGATGATACAGAAGAAGCACTGATCCAAACATCTTCCAGCATCAAAGAGGCTGATGCCGGTGAAAATGCGCTGAGTGACACGTTGGTACTAAATTACGATGAAGGATCTCTTGTATCATCATCTGGTGATTACCAGATGCCTTTGGTGTGGATAGACTTGGAAATGACTGGTTTGGATGTTGCAAAGGATCGGATATTGGAGATAGCTTGCATCATAACGGACGGGCCCTGATTTGGTTATAAATCAGAAGAAAGATCTGTTAGATAACATGGATGAATGGTGCAAAACTCATCATGCAGCTAGTGGATTGACACAGAGAGTACTACAGAGTACGATTTCAGAGCATGACGCAGAGACACAAGTGTTAGATTTTGTTAAGAAGCATGTTGGTTCATCTCCTCCATTAATAGCTGGGAATTCTGTTTATGTGGATTTACTATTTTTGAAGAATTATATGCCGCAGCTTGCAGCCATCTTC]
consensusID : consensus_5484#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[TCACATGGCTACCCATGGATGGGAAAATGGATTGTTTGCATGATCATATGTTCCCAAGTGTCACTGTTGGACCCTGCGTATGTTGAAATAACCGTGGTGTTGGGTTTTACATGTCCCTTGGATCCACGTGGCCTGATGGTAAGTATCGCCTAATGGTTATTGCACCTGTGAATGGTATTGGATCTATGAGCACGGGAGCCCATCACGGTCAGAGATACAGTTATATCCGTGTATTGTCCCATTTTGTCAGGTGATATCCCTTTATATAACTGTAATTTCTTGCACAAAGAAAA]
[+] EMBL BI812021 [TCACATGGCTACCCATGGATGGGAAAATGGATTGTTTGCATGATCATATGTTCCCAAGTGTCACTGTTGGACCCTGCGTATGTTGAAATAACCGTGGTGTTGGGTTTTACATGTCCCTTGGATCCACGTGGCCTGATGGTAAGTATCGCCTAATGGTTATTGCACCTGTGAATGGTATTGGATCTATGAGCACGGGAGCCCATCACGGTCAGAGATACAGTTATATCCGTGTATTGTCCCATTTTGTCAGGTGATATCCCTTTATATAACTGTAATTTCTTGCACAAAGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5484#0 --------------------------------------------------------CCCG 4
consensus_5484#1 GGCGTCCCCCGGCAGCGCTTCCTCCCTAAACCAACCTCAGCCTCGGTTGCTCCGTGCCCG 60
consensus_5484#2 ------------------------------------------------------------
consensus_5484#0 TGCGTGCGATTCCGCGTCTGCCGCTGCCGGCCGCCGACCGCCGACCGCCGGTGCGCACCT 64
consensus_5484#1 TGCGTGCGATTCCGCGTCTGCCGCTGCCGGCCGCCGACCGCCGACCGCCGGTGCGCACCT 120
consensus_5484#2 ------------------------------------------------------------
consensus_5484#0 TCGCCGAGGGAGGAGGAGTCTGTTATCGAGCAATTTCAACAAGGGCGGGGCCTTAATCTC 124
consensus_5484#1 TCGCCGAGGGAGGAGGAGTCTGTTATCGAGCAATTTCAACAAGGGCGGGGCCTTAATCTC 180
consensus_5484#2 ------------------------------------------------------------
consensus_5484#0 CTCGTGCAGCTTGTAAACCTCAGAGTAGGGGTGGGAAAGAAGTTTGGTGCGTGGATTAAA 184
consensus_5484#1 CTCGTGCAGCTTGTAAACCTCAGAGTAGGGGTGGGAAAGAAGTTTGGTGCGTGGATTAAA 240
consensus_5484#2 ------------------------------------------------------------
consensus_5484#0 TTAGCTGAAAGAGAAATTTGGGAGATGAGTGAGCTTGCGAACAAGTTCTTGGTTCTTCAT 244
consensus_5484#1 TTAGCTGAAAGAGAAATTTGGGAGATGAGTGAGCTTGCGAACAAGTTCTTGGTTCTTCAT 300
consensus_5484#2 ------------------------------------------------------------
consensus_5484#0 CTAGATGGTGAAGGTGGTGGAGCAGATGATACAGAAGAAGCACTGATCCAAACATCTTCC 304
consensus_5484#1 CTAGATGGTGAAGGTGGTGGAGCAGATGATACAGAAGAAGCACTGATCCAAACATCTTCC 360
consensus_5484#2 ------------------------------------------------------------
consensus_5484#0 AGCATCAAAGAGGCTGATGCCGGTGAAAATGCGCTGAGTGACACGTTGGTACTAAATTAC 364
consensus_5484#1 AGCATCAAAGAGGCTGATGCCGGTGAAAATGCGCTGAGTGACACGTTGGTACTAAATTAC 420
consensus_5484#2 ------------------------------------------------------------
consensus_5484#0 GATGAAGGATCTCTTGTATCATCATCTGGTGATTAC-CAGATGCCTTTGGTGTGGATAGA 423
consensus_5484#1 GATGAAGGATCTCTTGTATCATCATCTGGTGATTAC-CAGATGCCTTTGGTGTGGATAGA 479
consensus_5484#2 --------------------------------TCACATGGCTACCCATGG-ATGGGAAAA 27
* ** * * ** *** *** * *
consensus_5484#0 CTTGGAAATGACTGGTTTGGATGTTGCAAAGGATCGGATATTGGAGATAGCTTGCATCAT 483
consensus_5484#1 CTTGGAAATGACTGGTTTGGATGTTGCAAAGGATCGGATATTGGAGATAGCTTGCATCAT 539
consensus_5484#2 TGGATTGTTTGCATGATCATATGTTCCCAAGTGTCAC-TGTTGGACCCTGCGTATGTTGA 86
* * * * ***** * *** ** * ***** ** * *
consensus_5484#0 AACGGACGGTAAACTTACAAAACAAATAGAGGGCCCTGATTTGGTTATAAATCAGAAGAA 543
consensus_5484#1 AACGGACGG-----------------------GCCCTGATTTGGTTATAAATCAGAAGAA 576
consensus_5484#2 AATAACCGT----------------------GGTGTTGGGTT--TTACATGTCCCTTG-- 120
** ** * ** ** *** * ** *
consensus_5484#0 AGATCTGTTAGATAACATGGATGAATGGTGCAAAACTCATCATGCAGCTAGTGGATTGAC 603
consensus_5484#1 AGATCTGTTAGATAACATGGATGAATGGTGCAAAACTCATCATGCAGCTAGTGGATTGAC 636
consensus_5484#2 -GATCCACGTGGCCTGATGG-TAAGTATCGCCTAATGGTTATTGCACCT-GTGAAT-GGT 176
**** * **** * * * ** ** * **** ** *** ** *
consensus_5484#0 ACAGAGAGTACTACAGAGTACGATTTCAGAGCATGACGCAGAGACACAAGTGTTAGATTT 663
consensus_5484#1 ACAGAGAGTACTACAGAGTACGATTTCAGAGCATGACGCAGAGACACAAGTGTTAGATTT 696
consensus_5484#2 ATTGGATCTAT----GAGCACGGGAGCCCATCACGGT-CAGAGATACA---GTTATATCC 228
* * ** *** *** * * ** * ****** *** **** **
consensus_5484#0 TGTTAAGAAGCATGTTGGTTCATCTCCTCCATTAATAGCTGGGAATTCTGTTTATGTGGA 723
consensus_5484#1 TGTTAAGAAGCATGTTGGTTCATCTCCTCCATTAATAGCTGGGAATTCTGTTTATGTGGA 756
consensus_5484#2 ---------GTGTATTGTCCCATTTTGTCAGGTGATA---------TCCCTTTATATAAC 270
* * *** *** * ** * *** ** ***** *
consensus_5484#0 TTTACTATTTTTGAAGAATTATATGCCGCAGCTTGCAGCCATCTTCTCTCACGTTATTGT 783
consensus_5484#1 TTTACTATTTTTGAAGAATTATATGCCGCAGCTTGCAGCCATCTTC-------------- 802
consensus_5484#2 TGTAATTTCTTGCACAAAGAAAA------------------------------------- 293
* ** * * ** * ** * *
consensus_5484#0 TGATGTGAGCAGTATAATGGCTTTGTGCATCAGATGGTACCCCAAAGAAAGGAAGCGAAC 843
consensus_5484#1 ------------------------------------------------------------
consensus_5484#2 ------------------------------------------------------------
consensus_5484#0 TCCTCAAAAAGGGAAAAAACATAGGGCAATGAATGATATCAAAGAAAGCATCGCTGAACT 903
consensus_5484#1 ------------------------------------------------------------
consensus_5484#2 ------------------------------------------------------------
consensus_5484#0 GAAATACTACGAGGACAACATTTTCAAACCTCAAAAATCTAAGCAGTAGCTACATGGATG 963
consensus_5484#1 ------------------------------------------------------------
consensus_5484#2 ------------------------------------------------------------
consensus_5484#0 GAGCATGGTGGGCATCTTCATGATGGACAGCAAATCGATTCACATGCTAGCCATGATTGA 1023
consensus_5484#1 ------------------------------------------------------------
consensus_5484#2 ------------------------------------------------------------
consensus_5484#0 AAATGGATTTTTCATATCAATATTTCCAAGTGTCACTTTGACCTCGTATTTAAATACGTG 1083
consensus_5484#1 ------------------------------------------------------------
consensus_5484#2 ------------------------------------------------------------
consensus_5484#0 TTTTGTTTTCATGTCCATTGATCAGTGCCTGGATGTAAGTATGCCTATGTTATTCACCTG 1143
consensus_5484#1 ------------------------------------------------------------
consensus_5484#2 ------------------------------------------------------------
consensus_5484#0 TGAATGGTATTGGATCTATGAGCACGGGAGCCCATCACGGTCAGAGATAGCAGTTATATC 1203
consensus_5484#1 ------------------------------------------------------------
consensus_5484#2 ------------------------------------------------------------
consensus_5484#0 CGTGTATTGTCCCATTTTGTCAGGTGATATCCCTTTATATAACTGT 1249
consensus_5484#1 ----------------------------------------------
consensus_5484#2 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||