These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_549#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 965 fasta sequence [CCATCACCACCACCGCCGCTTCCTCCTCCGCCTCCGCCTCCACTCCACAACTCCGCCGCCGCCGCAATGCTGGAGGCCGTGATCCCGGCGGTGTGGAGCGCCGTCCACGGGTGGTTCACCCCCGCGGTGCTCTTCCTCGTCCTCAACATCGTCATCGGCACCATCGCGGTTACTTCCAAGGTCACCGCCTCCTCCTCGACGGCGGGCGGCGGCGGCGAGGGGGTTGGGTATGGAGCGTGGGCGGGTGGTGGTGGTGGTGGTGGAGGGGAGCAGAGGAGGTTCTCCCGCGTGCCGTCCATGGCGCTCGACCGGCTCCGGTCGTTTAATCTCTCCGGCGGTTCTCCGCAGCCGCCTCTGCCCCTGCTGCTCCCGAGGCGGCCGCGGTGGTGGGCGGGGTGCTGGATCTGGGCGCCCGCGATGAGGCGACGACGGCGGCGGTGGTGAAGGATGTGGGGGGCGGGAGAGAGCGCGAGGAGGAGGTGGAGGATGAGCAGGAGCGCGCGCAGGCGGCGCATGTGGTGGAGAGGAGCAAGTCGGAGGCGACGGCGGCGGCGGCGGACCTCCCGCGGCTGCCGGCGCGGCTGCGCAAGTCGGCCAGCGACCAGTCGGCGTTCGCGCACTTCGAGGCCGAGAAGAAGGCGGCGCGGCCACGCCGCCGCCGCCGCCGCCGCGGTGGGCAGCGACTTGTGAGACGCGTGTGATTTCCAGCAATCCGAGGGGGCTAGCCGCAAAACTGCTGATAAAAAAAAGAAGAAGAGAAATACAGGGAGAGGAGGAAGAACTCGAGAGAGAAAAAAATGGTAGTTTCTTTCTTTCTCCCCATCTCTTCTGTTTTGGTTTATTTTCTTTTTTTTTCTCCTTTCAAAATGCTTAGTAGTAGTATAATATTATCGTAGCATCCGACTTTTTGGATAGAATCTTGTGTAATGCAGCACCATATCATGTGAAAATTTCATCCTCATAAG] [+] EMBL AK069227 [CCATCACCACCACCGCCGCTTCCTCCTCCGCCTCCGCCTCCACTCCACAACTCCGCCGCCGCCGCAATGCTGGAGGCCGTGATCCCGGCGGTGTGGAGCGCCGTCCACGGGTGGTTCACCCCCGCGGTGCTCTTCCTCGTCCTCAACATCGTCATCGGCACCATCGCGGTTACTTCCAAGGTCACCGCCTCCTCCTCGACGGCGGGCGGCGGCGGCGAGGGGGTTGGGTATGGAGCGTGGGCGGGTGGTGGTGGTGGTGGTGGAGGGGAGCAGAGGAGGTTCTCCCGCGTGCCGTCCATGGCGCTCGACCGGCTCCGGTCGTTTAATCTCTCCGGCGGTTCTCCGCAGCCGCCTCTGCCCCTGCTGCTCCCGAGGCGGCCGCGGTGGTGGGCGGGGTGCTGGATCTGGGCGCCCGCGATGAGGCGACGACGGCGGCGGTGGTGAAGGATGTGGGGGGCGGGAGAGAGCGCGAGGAGGAGGTGGAGGATGAGCAGGAGCGCGCGCAGGCGGCGCATGTGGTGGAGAGGAGCAAGTCGGAGGCGACGGCGGCGGCGGCGGACCTCCCGCGGCTGCCGGCGCGGCTGCGCAAGTCGGCCAGCGACCAGTCGGCGTTCGCGCACTTCGAGGCCGAGAAGAAGGCGGCGCGGCCACGCCGCCGCCGCCGCCGCCGCGGTGGGCAGCGACTTGTGAGACGCGTGTGATTTCCAGCAATCCGAGGGGGCTAGCCGCAAAACTGCTGATAAAAAAAAGAAGAAGAGAAATACAGGGAGAGGAGGAAGAACTCGAGAGAGAAAAAAATGGTAGTTTCTTTCTTTCTCCCCATCTCTTCTGTTTTGGTTTATTTTCTTTTTTTTTCTCCTTTCAAAATGCTTAGTAGTAGTATAATATTATCGTAGCATCCGACTTTTTGGATAGAATCTTGTGTAATGCAGCACCATATCATGTGAAAATTTCATCCTCATAAG] consensusID : consensus_549#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 939 fasta sequence [ACCACCGCCGCTTCCTCCTCCGCCTCCGCCTCCACTCCACAACTCCGCCGCCGCCGCAATGCTGGAGGCCGTGATCCCGGCGGTGTGGAGCGCCGTCCACGGGTGGTTCACCCCCGCGGTGCTCTTCCTCGTCCTCAACATCGTCATCGGCACCATCGCGGTTACTTCCAAGGTCACCGCCTCCTCCTCGACGGCGGGCGGCGGCGGCGAGGGGGTTGGGTATGGAGCGTGGGCGGGTGGTGGTGGTGGTGGTGGAGGGGAGCAGAGGAGGTTCTCCCGCGTGCCGTCCATGGCGCTCGACCGGCTCCGGTCGTTTAATCTCTCCGGCCGGTTCTCCGCAGCCGCCTCTGCCCCTGCTGCTCCCGAGGCGGCCGCGGTGGTGGGCGGGGTGCTGGATCTGGGCGCCCGCGATGAGGCGACGACGGCGGCGGTGGTGAAGGATGTGGGGGGCGGGAGAGAGCGCGAGGAGGAGGTGGAGGATGAGCAGGAGCGCGCGCAGGCGGCGCATGTGGTGGAGAGGAGCAAGTCGGAGGCGACGGCGGCGGCGGCGGACCTCCCGCGGCTGCCGGCGCGGCTGCGCAAGTCGGCCAGCGACCAGTCGGCGTTCGCGCACTTCGAGGCCGCCGCCGCGGTGGGCAGCGACTTGTGAGACGCGTGTGATTTCCAGCAATCCGAGGGGGCTAGCCGCAAAACTGCTGATAAAAAAAAGAAGAAGAGAAATACAGGGAGAGGAGGAAGAACTCGAGAGAGAAAAAAATGGTAGTTTCTTTCTTTCTCCCCATCTCTTCTGTTTTGGTTTATTTTCTTTTTTTTTCTCCTTTCAAAATGCTTAGTAGTAGTATAATATTATCGTAGCATCCGACTTTTTGGATAGAATCTTGTGTAATGCAGCACCATATCATGTGAAAATTTCATCCTCATAAGAGATTTGGATAAGGA] [+] EMBL AK063099 [ACCACCGCCGCTTCCTCCTCCGCCTCCGCCTCCACTCCACAACTCCGCCGCCGCCGCAATGCTGGAGGCCGTGATCCCGGCGGTGTGGAGCGCCGTCCACGGGTGGTTCACCCCCGCGGTGCTCTTCCTCGTCCTCAACATCGTCATCGGCACCATCGCGGTTACTTCCAAGGTCACCGCCTCCTCCTCGACGGCGGGCGGCGGCGGCGAGGGGGTTGGGTATGGAGCGTGGGCGGGTGGTGGTGGTGGTGGTGGAGGGGAGCAGAGGAGGTTCTCCCGCGTGCCGTCCATGGCGCTCGACCGGCTCCGGTCGTTTAATCTCTCCGGCCGGTTCTCCGCAGCCGCCTCTGCCCCTGCTGCTCCCGAGGCGGCCGCGGTGGTGGGCGGGGTGCTGGATCTGGGCGCCCGCGATGAGGCGACGACGGCGGCGGTGGTGAAGGATGTGGGGGGCGGGAGAGAGCGCGAGGAGGAGGTGGAGGATGAGCAGGAGCGCGCGCAGGCGGCGCATGTGGTGGAGAGGAGCAAGTCGGAGGCGACGGCGGCGGCGGCGGACCTCCCGCGGCTGCCGGCGCGGCTGCGCAAGTCGGCCAGCGACCAGTCGGCGTTCGCGCACTTCGAGGCCGCCGCCGCGGTGGGCAGCGACTTGTGAGACGCGTGTGATTTCCAGCAATCCGAGGGGGCTAGCCGCAAAACTGCTGATAAAAAAAAGAAGAAGAGAAATACAGGGAGAGGAGGAAGAACTCGAGAGAGAAAAAAATGGTAGTTTCTTTCTTTCTCCCCATCTCTTCTGTTTTGGTTTATTTTCTTTTTTTTTCTCCTTTCAAAATGCTTAGTAGTAGTATAATATTATCGTAGCATCCGACTTTTTGGATAGAATCTTGTGTAATGCAGCACCATATCATGTGAAAATTTCATCCTCATAAGAGATTTGGATAAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_549#0 CCATCACCACCACCGCCGCTTCCTCCTCCGCCTCCGCCTCCACTCCACAACTCCGCCGCC 60 consensus_549#1 --------ACCACCGCCGCTTCCTCCTCCGCCTCCGCCTCCACTCCACAACTCCGCCGCC 52 **************************************************** consensus_549#0 GCCGCAATGCTGGAGGCCGTGATCCCGGCGGTGTGGAGCGCCGTCCACGGGTGGTTCACC 120 consensus_549#1 GCCGCAATGCTGGAGGCCGTGATCCCGGCGGTGTGGAGCGCCGTCCACGGGTGGTTCACC 112 ************************************************************ consensus_549#0 CCCGCGGTGCTCTTCCTCGTCCTCAACATCGTCATCGGCACCATCGCGGTTACTTCCAAG 180 consensus_549#1 CCCGCGGTGCTCTTCCTCGTCCTCAACATCGTCATCGGCACCATCGCGGTTACTTCCAAG 172 ************************************************************ consensus_549#0 GTCACCGCCTCCTCCTCGACGGCGGGCGGCGGCGGCGAGGGGGTTGGGTATGGAGCGTGG 240 consensus_549#1 GTCACCGCCTCCTCCTCGACGGCGGGCGGCGGCGGCGAGGGGGTTGGGTATGGAGCGTGG 232 ************************************************************ consensus_549#0 GCGGGTGGTGGTGGTGGTGGTGGAGGGGAGCAGAGGAGGTTCTCCCGCGTGCCGTCCATG 300 consensus_549#1 GCGGGTGGTGGTGGTGGTGGTGGAGGGGAGCAGAGGAGGTTCTCCCGCGTGCCGTCCATG 292 ************************************************************ consensus_549#0 GCGCTCGACCGGCTCCGGTCGTTTAATCTCTCCGGC-GGTTCTCCGCAGCCGCCTCTGCC 359 consensus_549#1 GCGCTCGACCGGCTCCGGTCGTTTAATCTCTCCGGCCGGTTCTCCGCAGCCGCCTCTGCC 352 ************************************ *********************** consensus_549#0 CCTGCTGCTCCCGAGGCGGCCGCGGTGGTGGGCGGGGTGCTGGATCTGGGCGCCCGCGAT 419 consensus_549#1 CCTGCTGCTCCCGAGGCGGCCGCGGTGGTGGGCGGGGTGCTGGATCTGGGCGCCCGCGAT 412 ************************************************************ consensus_549#0 GAGGCGACGACGGCGGCGGTGGTGAAGGATGTGGGGGGCGGGAGAGAGCGCGAGGAGGAG 479 consensus_549#1 GAGGCGACGACGGCGGCGGTGGTGAAGGATGTGGGGGGCGGGAGAGAGCGCGAGGAGGAG 472 ************************************************************ consensus_549#0 GTGGAGGATGAGCAGGAGCGCGCGCAGGCGGCGCATGTGGTGGAGAGGAGCAAGTCGGAG 539 consensus_549#1 GTGGAGGATGAGCAGGAGCGCGCGCAGGCGGCGCATGTGGTGGAGAGGAGCAAGTCGGAG 532 ************************************************************ consensus_549#0 GCGACGGCGGCGGCGGCGGACCTCCCGCGGCTGCCGGCGCGGCTGCGCAAGTCGGCCAGC 599 consensus_549#1 GCGACGGCGGCGGCGGCGGACCTCCCGCGGCTGCCGGCGCGGCTGCGCAAGTCGGCCAGC 592 ************************************************************ consensus_549#0 GACCAGTCGGCGTTCGCGCACTTCGAGGCCGAGAAGAAGGCGGCGCGGCCACGCCGCCGC 659 consensus_549#1 GACCAGTCGGCGTTCGCGCACTTCGAGGC------------------------------- 621 ***************************** consensus_549#0 CGCCGCCGCCGCGGTGGGCAGCGACTTGTGAGACGCGTGTGATTTCCAGCAATCCGAGGG 719 consensus_549#1 ---CGCCGCCGCGGTGGGCAGCGACTTGTGAGACGCGTGTGATTTCCAGCAATCCGAGGG 678 ********************************************************* consensus_549#0 GGCTAGCCGCAAAACTGCTGATAAAAAAAAGAAGAAGAGAAATACAGGGAGAGGAGGAAG 779 consensus_549#1 GGCTAGCCGCAAAACTGCTGATAAAAAAAAGAAGAAGAGAAATACAGGGAGAGGAGGAAG 738 ************************************************************ consensus_549#0 AACTCGAGAGAGAAAAAAATGGTAGTTTCTTTCTTTCTCCCCATCTCTTCTGTTTTGGTT 839 consensus_549#1 AACTCGAGAGAGAAAAAAATGGTAGTTTCTTTCTTTCTCCCCATCTCTTCTGTTTTGGTT 798 ************************************************************ consensus_549#0 TATTTTCTTTTTTTTTCTCCTTTCAAAATGCTTAGTAGTAGTATAATATTATCGTAGCAT 899 consensus_549#1 TATTTTCTTTTTTTTTCTCCTTTCAAAATGCTTAGTAGTAGTATAATATTATCGTAGCAT 858 ************************************************************ consensus_549#0 CCGACTTTTTGGATAGAATCTTGTGTAATGCAGCACCATATCATGTGAAAATTTCATCCT 959 consensus_549#1 CCGACTTTTTGGATAGAATCTTGTGTAATGCAGCACCATATCATGTGAAAATTTCATCCT 918 ************************************************************ consensus_549#0 CATAAG--------------- 965 consensus_549#1 CATAAGAGATTTGGATAAGGA 939 ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||