cluster # 5492

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Oryza sativa
cluster # 5492 cluster # 5492 Sequences # 3 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5492#0 length = 1325 sequences # 3
consensusID : consensus_5492#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1325
fasta sequence
                              [TGGCACGATCTCTCGCTGCCTTGGACTCTTCTAGTTCTAGTTTAGTTTGCCTTCTTTCTTCTCCGTCTCCTCCTCGCGGCGGCGCGCATGGAGCGGCTGATCTCCAAGTCCGTCGCCGCCCGGATCTCTCTGCCGGGGGGCGGATCCCCATCCCGCCGCCTCGCCGTCGCGGGTCTCGGCGGCGGCGGCGGCGTCGAGCCGTGGGCGGGGAGGCTACGGGCGCAGCCGCGTCTCGGGCCGATCGCGGCGCGGCCGCACGATGGTGTGTCGGCCCCGCCGCGGGAGGCCGCTCCGGCGGCGGCGGTTGGACCTCCGTGGAAGTTGCTGTGGAGTCTGCTCCCCAAGGCTTCCAGAGCTGCTCTTTTCCTATTGGTGGCGCTTGTTACCGGCACCCTGCAATCTAGCATTCCTTATCCTGCCCATGCATCAGTGCAATCAATAACCAAAACTGGTGGACTATTTACATCAGAGATACTAAGCAGTGGTTGGGCTGGTTTCATTGCTGGATGCTTGCATACCTTGTCTGGGCCTGACCATCTCGTTGCTTTGGCACCACTGTCGATTGGAAGATCAAGACTGGAAAGTGGACTGGTCGGTGCCCTTTGGGGTTGTGGTCATGATGCAGGACAAGTTATTTTTGGCCTGCTATTCTTATTACTCAAGGATCGATTGCACATTGAGATTCTCCGGACATGGGGAACAAGAGTGGTTGGTCTGACCCTTCTAATCATAGGAGGTATGGGCATCCGAGAAGCTACAGAGGTTCAGGAATCGTCGCTCGCCCTGGAAGGCGTGGACTGCAACATAACCAGCAGTGAGCCTTTACAAACCCCTGCTGCTCCCAGGAAGAAGAAAGTTGGTTTTGCAACATTTGCCACTGGAGTTGTTCATGGTCTCCAACCAGATGCTCTACTGATGGTGTTGCCTGCATTGGCCCTTCCCTCACGCTTCGCTGGTGCAGCATTTCTTGGCATGTTTTTGATGGGGACTGTATTTTCGATGGGGAGTTACACTGCTTTTGTAGGTTCTTGTAGTGAGGCCTTGAAAGAAAAGGTCCCTAGGATAACAGAGAAACTGACCTGGGCGGCTTCACTTGTAGCAATATGCATGGGAATAGCTCTTCTAGTTGGGCAGTTCTTCGGTTTCAGCCTATACTAATGTATTCGCAATACGACATTGTTTCCTTAATATTGTTGGCAATTAGATTGGTAACAGAGGATTTTATTTGTATGACTGCAAATTGTATACTGGTAGACACAGACTTTACACCGATTTTTTTCCTCCAGAAAAAAAGGAAGTGGTTTTGTGCTGTAAAAAAAAAAAAA]

[+] EMBL AK108804             [TGGCACGATCTCTCGCTGCCTTGGACTCTTCTAGTTCTAGTTTAGTTTGCCTTCTTTCTTCTCCGTCTCCTCCTCGCGGCGGCGCGCATGGAGCGGCTGATCTCCAAGTCCGTCGCCGCCCGGATCTCTCTGCCGGGGGGCGGATCCCCATCCCGCCGCCTCGCCGTCGCGGGTCTCGGCGGCGGCGGCGGCGTCGAGCCGTGGGCGGGGAGGCTACGGGCGCAGCCGCGTCTCGGGCCGATCGCGGCGCGGCCGCACGATGGTGTGTCGGCCCCGCCGCGGGAGGCCGCTCCGGCGGCGGCGGTTGGACCTCCGTGGAAGTTGCTGTGGAGTCTGCTCCCCAAGGCTTCCAGAGCTGCTCTTTTCCTATTGGTGGCGCTTGTTACCGGCACCCTGCAATCTAGCATTCCTTATCCTGCCCATGCATCAGTGCAATCAATAACCAAAACTGGTGGACTATTTACATCAGAGATACTAAGCAGTGGTTGGGCTGGTTTCATTGCTGGATGCTTGCATACCTTGTCTGGGCCTGACCATCTCGTTGCTTTGGCACCACTGTCGATTGGAAGATCAAGACTGGAAAGTGGACTGGTCGGTGCCCTTTGGGGTTGTGGTCATGATGCAGGACAAGTTATTTTTGGCCTGCTATTCTTATTACTCAAGGATCGATTGCACATTGAGATTCTCCGGACATGGGGAACAAGAGTGGTTGGTCTGACCCTTCTAATCATAGGAGGTATGGGCATCCGAGAAGCTACAGAGGTTCAGGAATCGTCGCTCGCCCTGGAAGGCGTGGACTGCAACATAACCAGCAGTGAGCCTTTACAAACCCCTGCTGCTCCCAGGAAGAAGAAAGTTGGTTTTGCAACATTTGCCACTGGAGTTGTTCATGGTCTCCAACCAGATGCTCTACTGATGGTGTTGCCTTCATTGGCCCTTCCCTCACGCTTCGCTGGTGCAGCATTTCTTGGCATGTTTTTGATGGGGACTGTATTTTCGATGGGGAGTTACACTGCTTTTGTAGGTTCTTGTAGTGAGGCCTTGAAAGAAAAGGTCCCTAGGATAACAGAGAAACTGACCTGGGCGGCTTCACTTGTAGCAATATGCATGGGAATAGCTCTTCTAGTTGGGCAGTTCTTCGGTTTCAGCCTATACTAATGTATTCGCAATACGACATTGTTTCCTTAATATTGTTGGCAATTAGATTGGTAACAGAGGATTTTATTTGTATGACTGCAAATTGTATACTGGTAGACACAGACTTTACACCGATTTT                                                 ]
[-] EMBL CA759311             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        agaggacgaGACAAGGGGAACAAGAGTGGTTGGTCTGACCCTTCTAATCATAGGAGGTATGGGCATCCGAGAAGCTACAGAGGTTCAGGAATCGTCGCTCGCCCTGGAAGGCGTGGACTGCAACATAACCAGCAGTGAGCCTTTACAAACCCCTGCTGCTCCCAGGAAGAAGAAAGTTGGTTTTGCAACATTTGCCACTGGAGTTGTTCATGGTCTCCAACCAGATGCTCTACTGATGGTGTTGCCTGCATTGGCCCTTCCCTCACGCTTCGCTGGTGCAGCATTTCTTGGCATGTTTTTGATGGGGACTGTATTTTCGATGGGGAGTTACACTGCTTTTGTAGGTTCTTGTAGTGAGGCCTTGAAAGAAAAGGTCCCTAGGATAACAGAGAAACTGACCTGGGCGGCTTCACTTGTAGCAATATGCATGGGAATAGCTTTTCTAGTTGGGCAGTTTTTCGGTTTCAGCCTATACTAATGTATTCGCAATACGACATTGTTTCCTTAATATTGTTGGCAATTAGATTGGTAACAGAGGATTTTATTTGTATGACTGCAAATTGTATACTGGTAGACACAGACTTTACACCGATTTTTTTCCTCCAGAAAAAAAGGAAGTGGTTTTGTGCTGTAAAAAAAAAAAAA]
[+] EMBL CA766344             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGGTTGGTCTGACCCTTCTAAT ATAGGAGGTATGGGCATCCGAGAAGCTACAGAGGTTCAGGAATCGTCGCTCGCCCTGGAAGGCGTGGACTGCAACATAACCAGCAGTGAGCCTTTACAAACCCCTGCTGCTCCCAGGAAGAAGAAAGTTGGTTTTGCAACATTTGCCACTGGAGTTGTTCATGGTCTCCAACCAGATGCTCTACTGATGGTGCTGCCTGCATTGGCCCTTCCCTCACGCTTCGCTGGTGCAGCATTTCTTGGCATGTTTTTGATGGGGACTGTATTTTCGATGGGGAGTTACACTGCTTTTGTAGGTTCTTGTAGTGAGGCCTTGAAAGAAAAGGTCCCTAGGATAACAGAGAAACTGACCTGGGCGGCTTCACTTGTAGCAATATGCATGGGAATAGCTCTTCTAGTTGGGCAGTTCTTCGGTTTCAGCCTATACTAATGTATTCGCAATACGACATTGTTTCCTTAATATTGTTGGCAATTAGATTGGTAACAGAGGATTTTATTTGTATGA                                                                                            ]




>consensus_5492#0
TGGCACGATCTCTCGCTGCCTTGGACTCTTCTAGTTCTAGTTTAGTTTGCCTTCTTTCTT
CTCCGTCTCCTCCTCGCGGCGGCGCGCATGGAGCGGCTGATCTCCAAGTCCGTCGCCGCC
CGGATCTCTCTGCCGGGGGGCGGATCCCCATCCCGCCGCCTCGCCGTCGCGGGTCTCGGC
GGCGGCGGCGGCGTCGAGCCGTGGGCGGGGAGGCTACGGGCGCAGCCGCGTCTCGGGCCG
ATCGCGGCGCGGCCGCACGATGGTGTGTCGGCCCCGCCGCGGGAGGCCGCTCCGGCGGCG
GCGGTTGGACCTCCGTGGAAGTTGCTGTGGAGTCTGCTCCCCAAGGCTTCCAGAGCTGCT
CTTTTCCTATTGGTGGCGCTTGTTACCGGCACCCTGCAATCTAGCATTCCTTATCCTGCC
CATGCATCAGTGCAATCAATAACCAAAACTGGTGGACTATTTACATCAGAGATACTAAGC
AGTGGTTGGGCTGGTTTCATTGCTGGATGCTTGCATACCTTGTCTGGGCCTGACCATCTC
GTTGCTTTGGCACCACTGTCGATTGGAAGATCAAGACTGGAAAGTGGACTGGTCGGTGCC
CTTTGGGGTTGTGGTCATGATGCAGGACAAGTTATTTTTGGCCTGCTATTCTTATTACTC
AAGGATCGATTGCACATTGAGATTCTCCGGACATGGGGAACAAGAGTGGTTGGTCTGACC
CTTCTAATCATAGGAGGTATGGGCATCCGAGAAGCTACAGAGGTTCAGGAATCGTCGCTC
GCCCTGGAAGGCGTGGACTGCAACATAACCAGCAGTGAGCCTTTACAAACCCCTGCTGCT
CCCAGGAAGAAGAAAGTTGGTTTTGCAACATTTGCCACTGGAGTTGTTCATGGTCTCCAA
CCAGATGCTCTACTGATGGTGTTGCCTGCATTGGCCCTTCCCTCACGCTTCGCTGGTGCA
GCATTTCTTGGCATGTTTTTGATGGGGACTGTATTTTCGATGGGGAGTTACACTGCTTTT
GTAGGTTCTTGTAGTGAGGCCTTGAAAGAAAAGGTCCCTAGGATAACAGAGAAACTGACC
TGGGCGGCTTCACTTGTAGCAATATGCATGGGAATAGCTCTTCTAGTTGGGCAGTTCTTC
GGTTTCAGCCTATACTAATGTATTCGCAATACGACATTGTTTCCTTAATATTGTTGGCAA
TTAGATTGGTAACAGAGGATTTTATTTGTATGACTGCAAATTGTATACTGGTAGACACAG
ACTTTACACCGATTTTTTTCCTCCAGAAAAAAAGGAAGTGGTTTTGTGCTGTAAAAAAAA
AAAAA
clustalw multiple alignements is not computed in this case