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Oryza sativa
cluster # 5493 cluster # 5493       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5493#0 length = 1206 sequences # 2  
consensus_5493#1 length = 823 sequences # 1  

consensusID : consensus_5493#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1206
fasta sequence
                              [ACACACACGGGCCACACACACCGCGGAGGAATCCAATCCAGCGGCTGAGATCGCGCCACGTATGTTCCCCCGCTTGCTCCTCGCCCACCGCCTCCTCGCCGGCGCCGCCGCTCCTCTCCCCCGCCGCCGGACGGCCGCCGCCATGTCCGCCGCGGCGCCGGGGACGCGGCTGCTGCGCGGCGTGGTGTTCGACATGGACGGGACCCTGACGGTGCCCGTCATCGACTTCCCGGCCATGTACCGCGAGGTGCTCGGCGGGGACGAGGCCTACGCGGCGGCGCGCGCGGCGGGCGGGGGCTCCGTCGACATACTCCACTGCATCGAGGGCTGGGCGCCCGACGAGCAGCGCCGCGCCTACGAGGTCATCGCGCGGTTCGAGCAGGATGGCCTCGACCGCCTCCAGATCATGCCCGGTGCCTCTGAGCTCTGCGGGTTCCTGGACGCAAAGCAGATCAGAAGAGGTTTAATCACCCGCAATGTGAAGACCGCAGTTGATTTGTTTCACCAAAGGTTTGGTATGATGTTTTCTCCAGCCTTAAGTAGAGAATTCCGCCCCTATAAGCCAGATCCAGCTCCCCTGCTTCATATTTGCTCCACTTGGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGGTGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCTGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATTTGCCGTAGTATTTGGGTGATTCAGAATCTTTTATCTGTGGCCATCTTTCATATTCATTCATTTGTT]

[+] EMBL AK058331             [ACACACACGGGCCACACACACCGCGGAGGAATCCAATCCAGCGGCTGAGATCGCGCCACGTATGTTCCCCCGCTTGCTCCTCGCCCACCGCCTCCTCGCCGGCGCCGCCGCTCCTCTCCCCCGCCGCCGGACGGCCGCCGCCATGTCCGCCGCGGCGCCGGGGACGCGGCTGCTGCGCGGCGTGGTGTTCGACATGGACGGGACCCTGACGGTGCCCGTCATCGACTTCCCGGCCATGTACCGCGAGGTGCTCGGCGGGGACGAGGCCTACGCGGCGGCGCGCGCGGCGGGCGGGGGCTCCGTCGACATACTCCACTGCATCGAGGGCTGGGCGCCCGACGAGCAGCGCCGCGCCTACGAGGTCATCGCGCGGTTCGAGCAGGATGGCCTCGACCGCCTCCAGATCATGCCCGGTGCCTCTGAGCTCTGCGGGTTCCTGGACGCAAAGCAGATCAGAAGAGGTTTAATCACCCGCAATGTGAAGACCGCAGTTGATTTGTTTCACCAAAGGTTTGGTATGATGTTTTCTCCAGCCTTAAGTAGAGAATTCCGCCCCTATAAGCCAGATCCAGCTCCCCTGCTTCATATTTGCTCCACTTGGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGGTGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCTGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATTTGCCGTAGTATTTGGGTGATTCAGAATCTTTTATCTGTGGCCATC                     ]
[+] EMBL AK060021             [                                           GCTGAGATCGCGCCACGTATGTTCCCCCGCTTGCTCCTCGCCCACCGCCTCCTCGCCGGCGCCGCCGCTCCTCTCCCCCGCCGCCGGACGGCCGCCGCCATGTCCGCCGCGGCGCCGGGGACGCGGCTGCTGCGCGGCGTGGTGTTCGACATGGACGGGACCCTGACGGTGCCCGTCATCGACTTCCCGGCCATGTACCGCGAGGTGCTCGGCGGGGACGAGGCCTACGCGGCGGCGCGCGCGGCGGGCGGGGGCTCCGTCGACATACTCCACTGCATCGAGGGCTGGGCGCCCGACGAGCAGCGCCGCGCCTACGAGGTCATCGCGCGGTTCGAGCAGGATGGCCTCGACCGCCTCCAGATCATGCCCGGTGCCTCTGAGCTCTGCGGGTTCCTGGACGCAAAGCAGATCAGAAGAGGTTTAATCACCCGCAATGTGAAGACCGCAGTTGATTTGTTTCACCAAAGGTTTGGTATGATGTTTTCTCCAGCCTTAAGTAGAGAATTCCGCCCCTATAAGCCAGATCCAGCTCCCCTGCTTCATATTTGCTCCACTTGGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGGTGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCTGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATTTGCCGTAGTATTTGGGTGATTCAGAATCTTTTATCTGTGGCCATCTTTCATATTCATTCATTTGTT]


>consensus_5493#0 ACACACACGGGCCACACACACCGCGGAGGAATCCAATCCAGCGGCTGAGATCGCGCCACG TATGTTCCCCCGCTTGCTCCTCGCCCACCGCCTCCTCGCCGGCGCCGCCGCTCCTCTCCC CCGCCGCCGGACGGCCGCCGCCATGTCCGCCGCGGCGCCGGGGACGCGGCTGCTGCGCGG CGTGGTGTTCGACATGGACGGGACCCTGACGGTGCCCGTCATCGACTTCCCGGCCATGTA CCGCGAGGTGCTCGGCGGGGACGAGGCCTACGCGGCGGCGCGCGCGGCGGGCGGGGGCTC CGTCGACATACTCCACTGCATCGAGGGCTGGGCGCCCGACGAGCAGCGCCGCGCCTACGA GGTCATCGCGCGGTTCGAGCAGGATGGCCTCGACCGCCTCCAGATCATGCCCGGTGCCTC TGAGCTCTGCGGGTTCCTGGACGCAAAGCAGATCAGAAGAGGTTTAATCACCCGCAATGT GAAGACCGCAGTTGATTTGTTTCACCAAAGGTTTGGTATGATGTTTTCTCCAGCCTTAAG TAGAGAATTCCGCCCCTATAAGCCAGATCCAGCTCCCCTGCTTCATATTTGCTCCACTTG GAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTCGTCTG TGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCA TGATTCTTTGCCTGAAGGTGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATT CTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACA GGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATG AACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTC TCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCA TTGTCAGCCGGTTTGATGTATATCACTATGTCCTGTCCACTATACCTGTTAGTATTCTGT GGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATT TGCCGTAGTATTTGGGTGATTCAGAATCTTTTATCTGTGGCCATCTTTCATATTCATTCA TTTGTT



consensusID : consensus_5493#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 823
fasta sequence
                              [TCCACTGNGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTAAGAATTCTTTATAAATTGTTTCTAAATAGTTTGCTTTGTCCCATGGTTTTAATTTCAGTCTGCAGTTGAGCTAAATTGTTCTAGTGTTGTTTTTTTATATGCCCCTTAACTGTAATACTTGCATAAGCTAAGTTACTAGGGTATTGGACAATGCCCTTTTAGCTCACAATTCACAGTTTTCTGAACTCAGAAAGATGCTTCAGTAGCTTATGGACGCTAATATGTTGTTTCTGAAATAGTTTTCACTGAAAACATGTGCAGATCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGATGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATTTGCCGTAAGGGTGGGT]

[-] EMBL CB617775             [TCCACTGNGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTAAGAATTCTTTATAAATTGTTTCTAAATAGTTTGCTTTGTCCCATGGTTTTAATTTCAGTCTGCAGTTGAGCTAAATTGTTCTAGTGTTGTTTTTTTATATGCCCCTTAACTGTAATACTTGCATAAGCTAAGTTACTAGGGTATTGGACAATGCCCTTTTAGCTCACAATTCACAGTTTTCTGAACTCAGAAAGATGCTTCAGTAGCTTATGGACGCTAATATGTTGTTTCTGAAATAGTTTTCACTGAAAACATGTGCAGATCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGATGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATTTGCCGTAAGGGTGGGT]


>consensus_5493#1 TCCACTGNGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGAT GTAAGAATTCTTTATAAATTGTTTCTAAATAGTTTGCTTTGTCCCATGGTTTTAATTTCA GTCTGCAGTTGAGCTAAATTGTTCTAGTGTTGTTTTTTTATATGCCCCTTAACTGTAATA CTTGCATAAGCTAAGTTACTAGGGTATTGGACAATGCCCTTTTAGCTCACAATTCACAGT TTTCTGAACTCAGAAAGATGCTTCAGTAGCTTATGGACGCTAATATGTTGTTTCTGAAAT AGTTTTCACTGAAAACATGTGCAGATCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGC TTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGATGTTCGACCT GACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTG GCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAAC ATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACC AGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTT TGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTA TGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAA TCAACCCTCGCGATGACTGGCAGAATTTGCCGTAAGGGTGGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5493#0      ACACACACGGGCCACACACACCGCGGAGGAATCCAATCCAGCGGCTGAGATCGCGCCACG 60
consensus_5493#1      ------------------------------------------------------------
                                                                                  

consensus_5493#0      TATGTTCCCCCGCTTGCTCCTCGCCCACCGCCTCCTCGCCGGCGCCGCCGCTCCTCTCCC 120
consensus_5493#1      ------------------------------------------------------------
                                                                                  

consensus_5493#0      CCGCCGCCGGACGGCCGCCGCCATGTCCGCCGCGGCGCCGGGGACGCGGCTGCTGCGCGG 180
consensus_5493#1      ------------------------------------------------------------
                                                                                  

consensus_5493#0      CGTGGTGTTCGACATGGACGGGACCCTGACGGTGCCCGTCATCGACTTCCCGGCCATGTA 240
consensus_5493#1      ------------------------------------------------------------
                                                                                  

consensus_5493#0      CCGCGAGGTGCTCGGCGGGGACGAGGCCTACGCGGCGGCGCGCGCGGCGGGCGGGGGCTC 300
consensus_5493#1      ----------------------------------------------------------TC 2
                                                                                **

consensus_5493#0      CGTCGACA-TACTCCACTGCATCGAGGGCTGGGCGCCCGACGAGCAGCGCCGCGCCTACG 359
consensus_5493#1      CACTGNGAATATTCCACCAAAT---GAGGTGGTC-----ATGGTTGGTGATA-GCCTCAA 53
                      *   *  * ** *****   **   * * *** *     * *    * *    ****   

consensus_5493#0      AGGTCATCGCGCGGTTCGAGCAGGATGGCCTCGACCGCCTCCAGATCATGCCCGGTGCCT 419
consensus_5493#1      GGATGATGTAAGAATTCTTTATAAATTGTTTCTAAATAGTTTG--CTTTGTCCCATGGTT 111
                       * * **       ***       ** *  ** *     *        ** **  **  *

consensus_5493#0      CTGAGCTCTGCGGGTTCCTGGACGCAAAGCAGATCAGAAGAGGTTTAATCACCCGCAATG 479
consensus_5493#1      TTAATTTCAGTCTGCAGTTGA--GCTAAATTGTTCTAGTGTTGTTTTTTTATATGCCCCT 169
                       * *  ** *   *    **   ** **   * **    *  ****  * *   **    

consensus_5493#0      TGAAGACCGCAGTTG-ATTTGTTTCACCA--AAGGTTTGGTATGATGTTTTCTCCAGCCT 536
consensus_5493#1      TAACTGTAATACTTGCATAAGCTAAGTTACTAGGGTATTGGACAATGCCCTTTTAGCTCA 229
                      * *       * *** **  * *     *  * *** * * *  ***   * *     * 

consensus_5493#0      TAAGT-AGAGAATTCCGCCCCTATAAGCCAGATCCAGCTCCCCTGCTTCATATTTGCTCC 595
consensus_5493#1      CAATTCACAGTTTTCTGAACTCAGAA---AGAT---GCTTCAGTAGCTTATGGACGCT-- 281
                       ** * * **  *** *  *  * **   ****   *** *  *   * **    ***  

consensus_5493#0      ACTTGGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTC 655
consensus_5493#1      ------AATATGTTGTTTC-TGAAATAGTTTTCACTGAAAACATGTGCAGA-------TC 327
                            *****         ***  * **  *   **   * *    **         **

consensus_5493#0      GTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGT 715
consensus_5493#1      GTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGT 387
                      ************************************************************

consensus_5493#0      CCCCATGATTCTTTGCCTGAAGGTGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAA 775
consensus_5493#1      CCCCATGATTCTTTGCCTGAAGATGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAA 447
                      ********************** *************************************

consensus_5493#0      GTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATC 835
consensus_5493#1      GTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATC 507
                      ************************************************************

consensus_5493#0      TGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATA 895
consensus_5493#1      TGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATA 567
                      ************************************************************

consensus_5493#0      CTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTA 955
consensus_5493#1      CTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTA 627
                      ************************************************************

consensus_5493#0      TGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATC 1015
consensus_5493#1      TGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATC 687
                      ************************************************************

consensus_5493#0      GTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCTGTCCACTATACCTGTTAGTAT 1075
consensus_5493#1      GTTCATTGTCAGCCGGTTTGATGTATATCACTATG-----TCCACTATACCTGTTAGTAT 742
                      ***********************************     ********************

consensus_5493#0      TCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCA 1135
consensus_5493#1      TCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCA 802
                      ************************************************************

consensus_5493#0      GAATTTGCCGTAGTATTTGGGTGATTCAGAATCTTTTATCTGTGGCCATCTTTCATATTC 1195
consensus_5493#1      GAATTTGCCGTAA-GGGTGGGT-------------------------------------- 823
                      ************     *****                                      

consensus_5493#0      ATTCATTTGTT 1206
consensus_5493#1      -----------
                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)