These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 926 fasta sequence [CGATGACNGTATATCCGACCTCAACTCCTCTGTCCTCTACTACGCAACTCTCTCTCTCAGGGGAAAAAAAAAATCTCCTCTCGGCCGAGATCGTCTCCACCGCCGGCGAGCCTTCGAAACCGGAGTTAACCAGCGCCACCGCCGTCGCTCGTCATGATACATTTTGTGCTCCTCATCAGCAGACAAGGGAAGGTGAGGCTGACCAAATGGTACAATCCATATCCTCAGAAGGAAAGATCCAAGGTTATCAAAGAAGTAAGTACGCTCGTCCTGACAAGAGGTCCAAAGATGTGCAATTTTGTCGATTGGCACGGATACAGAGCTGTATACAAAAGGTATGCAAGCCTTTACTTCTGCATGTGCATTGATGCTGCTGATAATGAACTGGAGACTCTTCAAATCATCCATCATTTTGTTGAGATATTAGACCGATATTTTGGCAATGTCTGCGAGCTTGACCTGATATTCAACTTCCACAAGGCATACTTTATATTGGATGAGGTTCTGATTGCCGGTGAGCTTCAAGAATCGAACAAGAAAGCAGTACTACGCCTGATCACTACACAGGACAACTTGGTGGAAGCAGCAAAGGAAGAGGCAAGCTCATTGAGGAACATAATTGCACAGGCCACCAAGTAGAGCAGCGCATCGTGCCTGCTACAATGATGATTACTCATTCTCACCCCAGGGCATGATATTAACTATAATCAACAGAAACTTTTTTTTACATTAAACTTGCCATAAAAATATTTTTTGAATGCTCTATGGTTTCATTTCGGCAGAAATTTGTACCCTCCTTTTTCTTTTATGTGTTGTTTTCTTCTAATTTTTTCTACCCTTCTTTTTCTTTGGAGTATATACTTAATTTTGTTCTCCTCATCATAGTGAGAAGGAATAACTTATATATTATTGAAATAATTTGGCTA] [+] EMBL CA767476 [CGATGACNGTATATCCGACCTCAACTCCTCTGTCCTCTACTACGCAACTCTCTCTCTCAGGGGAAAAAAAAAATCTCCTCTCGGCCGAGATCGTCTCCACCGCCGGCGAGCCTTCGAAACCGGAGTTAACCAGCGCCACCGCCGTCGCTCGTCATGATACATTTTGTGCTCCTCATCAGCAGACAAGGGAAGGTGAGGCTGACCAAATGGTACAATCCATATCCTCAGAAGGAAAGATCCAAGGTTATCAAAGAAGTAAGTACGCTCGTCCTGACAAGAGGTCCAAAGATGTGCAATTTTGTCGATTGGCACGGATACAGAGCTGTATACAAAAGGTATGCAAGCCTTTACTTCTGCATGTGCATTGATGCTGCTGATAATGAACTGGAGACTCTTCAAATCATCCATCATTTTGTTGAGATATTAGACCGATATTTTGGCAATGTCTGCGAGCTTGACCTGATATTCAACTTCCACAAGGCATACTTTATATTGGATGAGGTTCTGATTGCCGGTGAGCTTCAAGAATCGAACAAGAAAGCAGTACTACGCCTGATCACTACACAGGACAACTTGGTGGAAGCAGCAAAGGAAGAGGCAAGCTCATTGAGGAACATAATTGCACAGGCCACCAAGTAGAGCAGCGCATCGTGCCTGCTACAATGATGATTACTCATTCTCACCCCAGGGCATGATATTAACTATAATCAACAGAAACTTTTTTTTACATTAAACTTGCCATAAAAATATTTTTTGAATGCTCTATGGTTTCATTT ] [+] EMBL AK071871 [ tCTCTCTCTCTCAGGGG AAAAAAAAATCTCCTCTCGGCCGAGATCGTCTCCACCGCCGGCGAGCCTTCGAAACCGGAGCTAACCAGCGCCACCGCCGTCGCTCGTCATGATACATTTTGTGCTCCTCATCAGCAGACAAGGGAAGGTGAGGCTGACCAAATGGTACAATCCATATCCTCAGAAGGAAAGATCCAAGGTTATCAAAGAAGTAAGTACGCTCGTCCTGACAAGAGGTCCAAAGATGTGCAATTTTGTCGATTGGCACGGATACAGAGTTGTATACAAAAGGTATGCAAGCCTTTACTTCTGCATGTGCATTGATGCTGCTGATAATGAACTGGAGACTCTTCAAATCATCCATCATTTTGTTGAGATATTGGACCGATATTTTGGCAATGTCTGCGAGCTTGACCTGATATTCAACTTCCACAAGGCATACTTTATATTGGATGAGGTTCTGATTGCCGGTGAGCTTCAAGAATCGAACAAGAAAGCAGTACTACGCCTGATCACTACACAGGACAACTTGGTGGAAGCAGCAAAGGAAGAGGCAAGCTCATTGAGGAACATAATTGCACAGGCCACCAAGTAGAGCAGCGCATCGTGCCTGCTACAATGATGATTACTCATTCTCACCCCAGGGCATGATATTAACTATAATCAACAGGAACTTTTTTTTACATTAAACTTGCCATAAAAATATTTTTTGAATGCTCTGTGTTTTCATTTCGGCAGAAATTTGTACCCTCCTTTTTCTTTTATGTGTTGTTTTCTTCTAATTTTTTCTACCCTTCTTTTTCTTTGGAGTATATACTTAATTTTGTTCTCCTCATCATAGTGAGAAGGAATAACTTATATATTATTGAAATAATTTGGCTA] consensusID : consensus_5497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [CCAAAGGCCCCGAATACGTAAACCATATGGCTGACCCCGGCCAAGTGCAGTCCCCAAACGGCATCCACCCTGCATCTCAGCACGAGGCTCATCACCGTTAGATAACGATCTGCAGCCTCTCCAAATCTTCCGTCCGTTTGCTCAAATATTGCCCCAAATGTTTTGGCAACGTCCCCGACCCTGCCCTCATATTCGAGTTGCCCAAGGCATACTTTATATTGCCTGAGGTTTTGACCCCCGGTGACCTTCAAGAATCTATCAAGAAAGCAGTTTTACGCCTGATCCCTACACAGGTCAACTTGGTGGAAGCAGCAAAGGAAGAGGCAAGCTCACTGAGGAACATAATTGCCCAGGCCCCCAAGTAGAGCAGCGCATCGTGCCTGCTACAATGATGATTACTCATTCTCCCCCCAGGGCATGATATTAACTATAATCACCAGGAACTTTTTTTTACATTAAACTTGCCATAAAAATATTTTTTGAATGCTCTATGTTTTCATTTCGGCAGAAATTTGTACCCTCCTTTTTCTTTTATGTGTTGTTTTCTTCTATTTTTTCTACCCTTCTTTTTCTTTGGAGTATATACTTAATTTTGTTCTCCTCATCATAGTGAGAAGGAATAACTTATATATTATTGAAATAAAAAAAAAAAAAAA] [-] EMBL CA759241 [CCAAAGGCCCCGAATACGTAAACCATATGGCTGACCCCGGCCAAGTGCAGTCCCCAAACGGCATCCACCCTGCATCTCAGCACGAGGCTCATCACCGTTAGATAACGATCTGCAGCCTCTCCAAATCTTCCGTCCGTTTGCTCAAATATTGCCCCAAATGTTTTGGCAACGTCCCCGACCCTGCCCTCATATTCGAGTTGCCCAAGGCATACTTTATATTGCCTGAGGTTTTGACCCCCGGTGACCTTCAAGAATCTATCAAGAAAGCAGTTTTACGCCTGATCCCTACACAGGTCAACTTGGTGGAAGCAGCAAAGGAAGAGGCAAGCTCACTGAGGAACATAATTGCCCAGGCCCCCAAGTAGAGCAGCGCATCGTGCCTGCTACAATGATGATTACTCATTCTCCCCCCAGGGCATGATATTAACTATAATCACCAGGAACTTTTTTTTACATTAAACTTGCCATAAAAATATTTTTTGAATGCTCTATGTTTTCATTTCGGCAGAAATTTGTACCCTCCTTTTTCTTTTATGTGTTGTTTTCTTCTATTTTTTCTACCCTTCTTTTTCTTTGGAGTATATACTTAATTTTGTTCTCCTCATCATAGTGAGAAGGAATAACTTATATATTATTGAAATAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5497#0 CGATGACNGTATATCCGACCTCAACTCCTCTGTCCTCTACTACGCAACTCTCTCTCTCAG 60 consensus_5497#1 ------------------------------------------------------------ consensus_5497#0 GGGAAAAAAAAAATCTCCTCTCGGCCGAGATCGTCTCCACCGCCGGCGAGCCTTCGAAAC 120 consensus_5497#1 ------------------------------------------------------------ consensus_5497#0 CGGAGTTAACCAGCGCCACCGCCGTCGCTCGTCATGATACATTTTGTGCTCCTCATCAGC 180 consensus_5497#1 ------------------------------------------------------------ consensus_5497#0 AGACAAGGGAAGGTGAGGCTGACCAAATGGTACAATCCATATCCTCAGAAGGAAAGATCC 240 consensus_5497#1 ------------------------------------------------------------ consensus_5497#0 AAGGTTATCAAAGAAGTAAGTACGCTCGTCCTGACAAGAGGTCCAAAGATGTGCAATTTT 300 consensus_5497#1 ---------------------------------CCAAAGGCCCCGAATACGTA-AACCAT 26 *** * ** ** * ** ** * consensus_5497#0 GTCGATTGGCACGGATACAGAGCTGTATACAAAAGGTATGCAAGCCTTTACTTCTGCATG 360 consensus_5497#1 AT-GGCTGACCCCGGCCAAGTGCAGTCCCCAAACGGCATCCAC-CCTGCATCTCAGCACG 84 * * ** * * * ** ** ** **** ** ** ** *** * ** *** * consensus_5497#0 TGCATTGATGCTGCT-GATAATGAACTGGAGACTCTTCAAATCATCCATCATTTTGTTGA 419 consensus_5497#1 AGGCTCATCACCGTTAGATAACGATCTGCAGCCTCTCCAAATCTTCCGTCCGTTTGCTCA 144 * * * * * ***** ** *** ** **** ****** *** ** **** * * consensus_5497#0 GATATTAGACCGA-TATTTTGGCAATGTCTGCGAGCTTGACCTGATATTCAACTTCCACA 478 consensus_5497#1 AATATTGCCCCAAATGTTTTGGCAACGTCCCCGACCCTGCCCTCATATTCGAGTTGCCCA 204 ***** ** * * ********* *** *** * ** *** ****** * ** * ** consensus_5497#0 AGGCATACTTTATATTGGATGAGGTTCTGATTGCCGGTGAGCTTCAAGAATCGAACAAGA 538 consensus_5497#1 AGGCATACTTTATATTGCCTGAGGTTTTGACCCCCGGTGACCTTCAAGAATCTATCAAGA 264 ***************** ******* *** ******* *********** * ***** consensus_5497#0 AAGCAGTACTACGCCTGATCACTACACAGGACAACTTGGTGGAAGCAGCAAAGGAAGAGG 598 consensus_5497#1 AAGCAGTTTTACGCCTGATCCCTACACAGGTCAACTTGGTGGAAGCAGCAAAGGAAGAGG 324 ******* *********** ********* ***************************** consensus_5497#0 CAAGCTCATTGAGGAACATAATTGCACAGGCCACCAAGTAGAGCAGCGCATCGTGCCTGC 658 consensus_5497#1 CAAGCTCACTGAGGAACATAATTGCCCAGGCCCCCAAGTAGAGCAGCGCATCGTGCCTGC 384 ******** **************** ****** *************************** consensus_5497#0 TACAATGATGATTACTCATTCTCACCCCAGGGCATGATATTAACTATAATCAACAGAAAC 718 consensus_5497#1 TACAATGATGATTACTCATTCTCCCCCCAGGGCATGATATTAACTATAATCACCAGGAAC 444 *********************** **************************** *** *** consensus_5497#0 TTTTTTTTACATTAAACTTGCCATAAAAATATTTTTTGAATGCTCTATGGTTTCATTTCG 778 consensus_5497#1 TTTTTTTTACATTAAACTTGCCATAAAAATATTTTTTGAATGCTCTATGTTTTCATTTCG 504 ************************************************* ********** consensus_5497#0 GCAGAAATTTGTACCCTCCTTTTTCTTTTATGTGTTGTTTTCTTCTAATTTTTTCTACCC 838 consensus_5497#1 GCAGAAATTTGTACCCTCCTTTTTCTTTTATGTGTTGTTTTCTTCTA-TTTTTTCTACCC 563 *********************************************** ************ consensus_5497#0 TTCTTTTTCTTTGGAGTATATACTTAATTTTGTTCTCCTCATCATAGTGAGAAGGAATAA 898 consensus_5497#1 TTCTTTTTCTTTGGAGTATATACTTAATTTTGTTCTCCTCATCATAGTGAGAAGGAATAA 623 ************************************************************ consensus_5497#0 CTTATATATTATTGAAATAATTTGGCTA----- 926 consensus_5497#1 CTTATATATTATTGAAATAAAAAAAAAAAAAAA 656 ******************** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||