cluster # 5497

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Oryza sativa
cluster # 5497 cluster # 5497 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5497#0 length = 926 sequences # 2

consensus_5497#1 length = 656 sequences # 1

consensusID : consensus_5497#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 926
fasta sequence

                              [CGATGACNGTATATCCGACCTCAACTCCTCTGTCCTCTACTACGCAACTCTCTCTCTCAGGGGAAAAAAAAAATCTCCTCTCGGCCGAGATCGTCTCCACCGCCGGCGAGCCTTCGAAACCGGAGTTAACCAGCGCCACCGCCGTCGCTCGTCATGATACATTTTGTGCTCCTCATCAGCAGACAAGGGAAGGTGAGGCTGACCAAATGGTACAATCCATATCCTCAGAAGGAAAGATCCAAGGTTATCAAAGAAGTAAGTACGCTCGTCCTGACAAGAGGTCCAAAGATGTGCAATTTTGTCGATTGGCACGGATACAGAGCTGTATACAAAAGGTATGCAAGCCTTTACTTCTGCATGTGCATTGATGCTGCTGATAATGAACTGGAGACTCTTCAAATCATCCATCATTTTGTTGAGATATTAGACCGATATTTTGGCAATGTCTGCGAGCTTGACCTGATATTCAACTTCCACAAGGCATACTTTATATTGGATGAGGTTCTGATTGCCGGTGAGCTTCAAGAATCGAACAAGAAAGCAGTACTACGCCTGATCACTACACAGGACAACTTGGTGGAAGCAGCAAAGGAAGAGGCAAGCTCATTGAGGAACATAATTGCACAGGCCACCAAGTAGAGCAGCGCATCGTGCCTGCTACAATGATGATTACTCATTCTCACCCCAGGGCATGATATTAACTATAATCAACAGAAACTTTTTTTTACATTAAACTTGCCATAAAAATATTTTTTGAATGCTCTATGGTTTCATTTCGGCAGAAATTTGTACCCTCCTTTTTCTTTTATGTGTTGTTTTCTTCTAATTTTTTCTACCCTTCTTTTTCTTTGGAGTATATACTTAATTTTGTTCTCCTCATCATAGTGAGAAGGAATAACTTATATATTATTGAAATAATTTGGCTA]

[+] EMBL CA767476             [CGATGACNGTATATCCGACCTCAACTCCTCTGTCCTCTACTACGCAACTCTCTCTCTCAGGGGAAAAAAAAAATCTCCTCTCGGCCGAGATCGTCTCCACCGCCGGCGAGCCTTCGAAACCGGAGTTAACCAGCGCCACCGCCGTCGCTCGTCATGATACATTTTGTGCTCCTCATCAGCAGACAAGGGAAGGTGAGGCTGACCAAATGGTACAATCCATATCCTCAGAAGGAAAGATCCAAGGTTATCAAAGAAGTAAGTACGCTCGTCCTGACAAGAGGTCCAAAGATGTGCAATTTTGTCGATTGGCACGGATACAGAGCTGTATACAAAAGGTATGCAAGCCTTTACTTCTGCATGTGCATTGATGCTGCTGATAATGAACTGGAGACTCTTCAAATCATCCATCATTTTGTTGAGATATTAGACCGATATTTTGGCAATGTCTGCGAGCTTGACCTGATATTCAACTTCCACAAGGCATACTTTATATTGGATGAGGTTCTGATTGCCGGTGAGCTTCAAGAATCGAACAAGAAAGCAGTACTACGCCTGATCACTACACAGGACAACTTGGTGGAAGCAGCAAAGGAAGAGGCAAGCTCATTGAGGAACATAATTGCACAGGCCACCAAGTAGAGCAGCGCATCGTGCCTGCTACAATGATGATTACTCATTCTCACCCCAGGGCATGATATTAACTATAATCAACAGAAACTTTTTTTTACATTAAACTTGCCATAAAAATATTTTTTGAATGCTCTATGGTTTCATTT                                                                                                                                                      ]
[+] EMBL AK071871             [                                              tCTCTCTCTCTCAGGGG AAAAAAAAATCTCCTCTCGGCCGAGATCGTCTCCACCGCCGGCGAGCCTTCGAAACCGGAGCTAACCAGCGCCACCGCCGTCGCTCGTCATGATACATTTTGTGCTCCTCATCAGCAGACAAGGGAAGGTGAGGCTGACCAAATGGTACAATCCATATCCTCAGAAGGAAAGATCCAAGGTTATCAAAGAAGTAAGTACGCTCGTCCTGACAAGAGGTCCAAAGATGTGCAATTTTGTCGATTGGCACGGATACAGAGTTGTATACAAAAGGTATGCAAGCCTTTACTTCTGCATGTGCATTGATGCTGCTGATAATGAACTGGAGACTCTTCAAATCATCCATCATTTTGTTGAGATATTGGACCGATATTTTGGCAATGTCTGCGAGCTTGACCTGATATTCAACTTCCACAAGGCATACTTTATATTGGATGAGGTTCTGATTGCCGGTGAGCTTCAAGAATCGAACAAGAAAGCAGTACTACGCCTGATCACTACACAGGACAACTTGGTGGAAGCAGCAAAGGAAGAGGCAAGCTCATTGAGGAACATAATTGCACAGGCCACCAAGTAGAGCAGCGCATCGTGCCTGCTACAATGATGATTACTCATTCTCACCCCAGGGCATGATATTAACTATAATCAACAGGAACTTTTTTTTACATTAAACTTGCCATAAAAATATTTTTTGAATGCTCTGTGTTTTCATTTCGGCAGAAATTTGTACCCTCCTTTTTCTTTTATGTGTTGTTTTCTTCTAATTTTTTCTACCCTTCTTTTTCTTTGGAGTATATACTTAATTTTGTTCTCCTCATCATAGTGAGAAGGAATAACTTATATATTATTGAAATAATTTGGCTA]




>consensus_5497#0
CGATGACNGTATATCCGACCTCAACTCCTCTGTCCTCTACTACGCAACTCTCTCTCTCAG
GGGAAAAAAAAAATCTCCTCTCGGCCGAGATCGTCTCCACCGCCGGCGAGCCTTCGAAAC
CGGAGTTAACCAGCGCCACCGCCGTCGCTCGTCATGATACATTTTGTGCTCCTCATCAGC
AGACAAGGGAAGGTGAGGCTGACCAAATGGTACAATCCATATCCTCAGAAGGAAAGATCC
AAGGTTATCAAAGAAGTAAGTACGCTCGTCCTGACAAGAGGTCCAAAGATGTGCAATTTT
GTCGATTGGCACGGATACAGAGCTGTATACAAAAGGTATGCAAGCCTTTACTTCTGCATG
TGCATTGATGCTGCTGATAATGAACTGGAGACTCTTCAAATCATCCATCATTTTGTTGAG
ATATTAGACCGATATTTTGGCAATGTCTGCGAGCTTGACCTGATATTCAACTTCCACAAG
GCATACTTTATATTGGATGAGGTTCTGATTGCCGGTGAGCTTCAAGAATCGAACAAGAAA
GCAGTACTACGCCTGATCACTACACAGGACAACTTGGTGGAAGCAGCAAAGGAAGAGGCA
AGCTCATTGAGGAACATAATTGCACAGGCCACCAAGTAGAGCAGCGCATCGTGCCTGCTA
CAATGATGATTACTCATTCTCACCCCAGGGCATGATATTAACTATAATCAACAGAAACTT
TTTTTTACATTAAACTTGCCATAAAAATATTTTTTGAATGCTCTATGGTTTCATTTCGGC
AGAAATTTGTACCCTCCTTTTTCTTTTATGTGTTGTTTTCTTCTAATTTTTTCTACCCTT
CTTTTTCTTTGGAGTATATACTTAATTTTGTTCTCCTCATCATAGTGAGAAGGAATAACT
TATATATTATTGAAATAATTTGGCTA

consensusID : consensus_5497#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [CCAAAGGCCCCGAATACGTAAACCATATGGCTGACCCCGGCCAAGTGCAGTCCCCAAACGGCATCCACCCTGCATCTCAGCACGAGGCTCATCACCGTTAGATAACGATCTGCAGCCTCTCCAAATCTTCCGTCCGTTTGCTCAAATATTGCCCCAAATGTTTTGGCAACGTCCCCGACCCTGCCCTCATATTCGAGTTGCCCAAGGCATACTTTATATTGCCTGAGGTTTTGACCCCCGGTGACCTTCAAGAATCTATCAAGAAAGCAGTTTTACGCCTGATCCCTACACAGGTCAACTTGGTGGAAGCAGCAAAGGAAGAGGCAAGCTCACTGAGGAACATAATTGCCCAGGCCCCCAAGTAGAGCAGCGCATCGTGCCTGCTACAATGATGATTACTCATTCTCCCCCCAGGGCATGATATTAACTATAATCACCAGGAACTTTTTTTTACATTAAACTTGCCATAAAAATATTTTTTGAATGCTCTATGTTTTCATTTCGGCAGAAATTTGTACCCTCCTTTTTCTTTTATGTGTTGTTTTCTTCTATTTTTTCTACCCTTCTTTTTCTTTGGAGTATATACTTAATTTTGTTCTCCTCATCATAGTGAGAAGGAATAACTTATATATTATTGAAATAAAAAAAAAAAAAAA]

[-] EMBL CA759241             [CCAAAGGCCCCGAATACGTAAACCATATGGCTGACCCCGGCCAAGTGCAGTCCCCAAACGGCATCCACCCTGCATCTCAGCACGAGGCTCATCACCGTTAGATAACGATCTGCAGCCTCTCCAAATCTTCCGTCCGTTTGCTCAAATATTGCCCCAAATGTTTTGGCAACGTCCCCGACCCTGCCCTCATATTCGAGTTGCCCAAGGCATACTTTATATTGCCTGAGGTTTTGACCCCCGGTGACCTTCAAGAATCTATCAAGAAAGCAGTTTTACGCCTGATCCCTACACAGGTCAACTTGGTGGAAGCAGCAAAGGAAGAGGCAAGCTCACTGAGGAACATAATTGCCCAGGCCCCCAAGTAGAGCAGCGCATCGTGCCTGCTACAATGATGATTACTCATTCTCCCCCCAGGGCATGATATTAACTATAATCACCAGGAACTTTTTTTTACATTAAACTTGCCATAAAAATATTTTTTGAATGCTCTATGTTTTCATTTCGGCAGAAATTTGTACCCTCCTTTTTCTTTTATGTGTTGTTTTCTTCTATTTTTTCTACCCTTCTTTTTCTTTGGAGTATATACTTAATTTTGTTCTCCTCATCATAGTGAGAAGGAATAACTTATATATTATTGAAATAAAAAAAAAAAAAAA]




>consensus_5497#1
CCAAAGGCCCCGAATACGTAAACCATATGGCTGACCCCGGCCAAGTGCAGTCCCCAAACG
GCATCCACCCTGCATCTCAGCACGAGGCTCATCACCGTTAGATAACGATCTGCAGCCTCT
CCAAATCTTCCGTCCGTTTGCTCAAATATTGCCCCAAATGTTTTGGCAACGTCCCCGACC
CTGCCCTCATATTCGAGTTGCCCAAGGCATACTTTATATTGCCTGAGGTTTTGACCCCCG
GTGACCTTCAAGAATCTATCAAGAAAGCAGTTTTACGCCTGATCCCTACACAGGTCAACT
TGGTGGAAGCAGCAAAGGAAGAGGCAAGCTCACTGAGGAACATAATTGCCCAGGCCCCCA
AGTAGAGCAGCGCATCGTGCCTGCTACAATGATGATTACTCATTCTCCCCCCAGGGCATG
ATATTAACTATAATCACCAGGAACTTTTTTTTACATTAAACTTGCCATAAAAATATTTTT
TGAATGCTCTATGTTTTCATTTCGGCAGAAATTTGTACCCTCCTTTTTCTTTTATGTGTT
GTTTTCTTCTATTTTTTCTACCCTTCTTTTTCTTTGGAGTATATACTTAATTTTGTTCTC
CTCATCATAGTGAGAAGGAATAACTTATATATTATTGAAATAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5497#0      CGATGACNGTATATCCGACCTCAACTCCTCTGTCCTCTACTACGCAACTCTCTCTCTCAG 60
consensus_5497#1      ------------------------------------------------------------
                                                                                  

consensus_5497#0      GGGAAAAAAAAAATCTCCTCTCGGCCGAGATCGTCTCCACCGCCGGCGAGCCTTCGAAAC 120
consensus_5497#1      ------------------------------------------------------------
                                                                                  

consensus_5497#0      CGGAGTTAACCAGCGCCACCGCCGTCGCTCGTCATGATACATTTTGTGCTCCTCATCAGC 180
consensus_5497#1      ------------------------------------------------------------
                                                                                  

consensus_5497#0      AGACAAGGGAAGGTGAGGCTGACCAAATGGTACAATCCATATCCTCAGAAGGAAAGATCC 240
consensus_5497#1      ------------------------------------------------------------
                                                                                  

consensus_5497#0      AAGGTTATCAAAGAAGTAAGTACGCTCGTCCTGACAAGAGGTCCAAAGATGTGCAATTTT 300
consensus_5497#1      ---------------------------------CCAAAGGCCCCGAATACGTA-AACCAT 26
                                                        ***  *  ** ** * **  **   *

consensus_5497#0      GTCGATTGGCACGGATACAGAGCTGTATACAAAAGGTATGCAAGCCTTTACTTCTGCATG 360
consensus_5497#1      AT-GGCTGACCCCGGCCAAGTGCAGTCCCCAAACGGCATCCAC-CCTGCATCTCAGCACG 84
                       * *  ** * * *    ** ** **   **** ** ** **  ***  *  ** *** *

consensus_5497#0      TGCATTGATGCTGCT-GATAATGAACTGGAGACTCTTCAAATCATCCATCATTTTGTTGA 419
consensus_5497#1      AGGCTCATCACCGTTAGATAACGATCTGCAGCCTCTCCAAATCTTCCGTCCGTTTGCTCA 144
                       *  *     * * * ***** ** *** ** **** ****** *** **  **** * *

consensus_5497#0      GATATTAGACCGA-TATTTTGGCAATGTCTGCGAGCTTGACCTGATATTCAACTTCCACA 478
consensus_5497#1      AATATTGCCCCAAATGTTTTGGCAACGTCCCCGACCCTGCCCTCATATTCGAGTTGCCCA 204
                       *****   ** * * ********* ***  *** * ** *** ****** * ** * **

consensus_5497#0      AGGCATACTTTATATTGGATGAGGTTCTGATTGCCGGTGAGCTTCAAGAATCGAACAAGA 538
consensus_5497#1      AGGCATACTTTATATTGCCTGAGGTTTTGACCCCCGGTGACCTTCAAGAATCTATCAAGA 264
                      *****************  ******* ***   ******* *********** * *****

consensus_5497#0      AAGCAGTACTACGCCTGATCACTACACAGGACAACTTGGTGGAAGCAGCAAAGGAAGAGG 598
consensus_5497#1      AAGCAGTTTTACGCCTGATCCCTACACAGGTCAACTTGGTGGAAGCAGCAAAGGAAGAGG 324
                      *******  *********** ********* *****************************

consensus_5497#0      CAAGCTCATTGAGGAACATAATTGCACAGGCCACCAAGTAGAGCAGCGCATCGTGCCTGC 658
consensus_5497#1      CAAGCTCACTGAGGAACATAATTGCCCAGGCCCCCAAGTAGAGCAGCGCATCGTGCCTGC 384
                      ******** **************** ****** ***************************

consensus_5497#0      TACAATGATGATTACTCATTCTCACCCCAGGGCATGATATTAACTATAATCAACAGAAAC 718
consensus_5497#1      TACAATGATGATTACTCATTCTCCCCCCAGGGCATGATATTAACTATAATCACCAGGAAC 444
                      *********************** **************************** *** ***

consensus_5497#0      TTTTTTTTACATTAAACTTGCCATAAAAATATTTTTTGAATGCTCTATGGTTTCATTTCG 778
consensus_5497#1      TTTTTTTTACATTAAACTTGCCATAAAAATATTTTTTGAATGCTCTATGTTTTCATTTCG 504
                      ************************************************* **********

consensus_5497#0      GCAGAAATTTGTACCCTCCTTTTTCTTTTATGTGTTGTTTTCTTCTAATTTTTTCTACCC 838
consensus_5497#1      GCAGAAATTTGTACCCTCCTTTTTCTTTTATGTGTTGTTTTCTTCTA-TTTTTTCTACCC 563
                      *********************************************** ************

consensus_5497#0      TTCTTTTTCTTTGGAGTATATACTTAATTTTGTTCTCCTCATCATAGTGAGAAGGAATAA 898
consensus_5497#1      TTCTTTTTCTTTGGAGTATATACTTAATTTTGTTCTCCTCATCATAGTGAGAAGGAATAA 623
                      ************************************************************

consensus_5497#0      CTTATATATTATTGAAATAATTTGGCTA----- 926
consensus_5497#1      CTTATATATTATTGAAATAAAAAAAAAAAAAAA 656
                      ********************       *