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Oryza sativa
cluster # 5499 cluster # 5499       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5499#0 length = 1006 sequences # 3  

consensusID : consensus_5499#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1006
fasta sequence
                              [GGTATTCAGTACGCACTACGCAGCAGCCCGTGAGTCGTCGTGACCAAACGTATAGTATACTAGCTACCAAAAGCAGTACGGTGCCTGGTTTCATTGTAAGCAGCCGCGCCGAGTCAGTAGCGTAGCGTGAGCGCGGTGAAGATGGCCGGGGAGGCATTGAAGGAGGCGGGGGCGACGCCCGCCGCAGCGAACGCGGGGGAGGAGAAGGCCGTCATCCCGGCGGCTTCGACATCGCCGGTGATCTCCAAGACCGATGATGACACGGAGCCGCCGGCCGATGACTCCAAGGCTCTCGTCGTCTTCGTCGAGAAGGTTGCTGATAAACCTCATGCTGAGAAGGCAACAGCAACAGCAACACCAACAAGGACCTCAAATGACAGAGATATTGCCCTTGCAAAGGTGGAGACAGACAAGCGAGAATCGTTGATCAAAGCATGGGAGGAGAACGAAAAGGCAAAAGCGGAGAACAGGGCCTCTAAGAAGTTATTGGATATTATTTCATGGGAGAACACAAAGAAGGCAGTAATAAAAACTCAACTGAAAAAGAAGGAAGAAGAGTTGGAAAGGAAGAAGGCAGAGTACGCTGAGAAGGCGAAGAACAAGGAAGCAATCGTCCATAAGGAAGCTGAAGAAAAGAGAGCAATGGTGATGGCCCGGCGCGGTGAAGAAGTGATCAAGGCCGAGGAGATAGCAGCTAAGTACCGTGCAACCGGAGTGACACCGAAGAAACATATCGGGTGTCTTAGGGCATAAGAAACATCGATCCGAGCCATATACTTGTTTTTCTTTCTCTTTCGAAAGTTATTTGTGTTGGGTTGTAACTTGTAAGTGTGTACT-TTTTTTTCTTTGGAAAAATTGGAACCATGCCATTATAATTTTGTAAAATTTAAGATATGCCATCCTGATCCACATGTCATTGATTTATGTAGGTCCTACATGTCATTGACTCATGATTTTTTCTTTGGGTGGTCTAAAACATTTCGAGTGCAGTTAATAATAACACGTT]

[+] EMBL AK105194             [GGTATTCAGTACGCACTACGCAGCAGCCCGTGAGTCGTCGTGACCAAACGTATAGTATACTAGCTACCAAAAGCAGTACGGTGCCTGGTTTCATTGTAAGCAGCCGCGCCGAGTCAGTAGCGTAGCGTGAGCGCGGTGAAGATGGCCGGGGAGGCATTGAAGGAGGCGGGGGCGACGCCCGCCGCAGCGAACGCGGGGGAGGAGAAGGCCGTCATCCCGGCGGCTTCGACATCGCCGGTGATCTCCAAGACCGATGATGACACGGAGCCGCCGGCCGATGACTCCAAGGCTCTCGTCGTCTTCGTCGAGAAGGTTGCTGATAAACCTCATGCTGAGAAGGCAACAGCAACAGCAACACCAACAAGGACCTCAAATGACAGAGATATTGCCCTTGCAAAGGTGGAGACAGACAAGCGAGAATCGTTGATCAAAGCATGGGAGGAGAACGAAAAGGCAAAAGCGGAGAACAGGGCCTCTAAGAAGTTATTGGATATTATTTCATGGGAGAACACAAAGAAGGCAGTAATAAAAACTCAACTGAAAAAGAAGGAAGAAGAGTTGGAAAGGAAGAAGGCAGAGTACGCTGAGAAGGCGAAGAACAAGGAAGCAATCGTCCATAAGGAAGCTGAAGAAAAGAGAGCAATGGTGATGGCCCGGCGCGGTGAAGAAGTGATCAAGGCCGAGGAGATAGCAGCTAAGTACCGTGCAACCGGAGTGACACCGAAGAAACATATCGGGTGTTTTGGGGCATAAGAAACATCGATCCGAGCCATATACTTGTTTTTCTTTCTCTTTCGAAAGTTATTTGTGTTGGGTTGTAACTTGTAAGTGTGTACT TTTTTTTCTTTGGAAAAATTGGAACCATGCCATTATAATTTTGTAAAATTT                                                                                                                      ]
[+] EMBL CB618309             [                     AGCAGCCCGTGAGTCGTCGTGACCAAACGTATAGTATACTAGCTACCAAAAGCAGTACGGTGCCTGGTTTCATTGTAAGCAGCCGCGCCGAGTCAGTAGCGTAGCGTGAGCGCGGTGAAGATGGCCGGGGAGGCATTGAAGGAGGCGGGGGCGACGCCCGCCGCAGCGAACGCGGGGGAGGAGAAGGCCGTCATCCCGGCGGCTTCGACATCGCCGGTGATCTCCAAGACCGATGATGACACGGAGCCGCCGGCCGATGACTCCAAGGCTCTCGTCGTCTTCGTCGAGAAGGTTGCTGATAAACCTCATGCTGAGAAGGCAACAGCAACAGCAACACCAACAAGGACCTCAAATGACAGAGATATTGCCCTTGCAAAGGTGGAGACAGACAAGCGAGAATCGTTGATCAAAGCATGGGAGGAGAACGAAAAGGCAAAAGCGGAGAACAGGGCCTCTAAGAAGTTATTGGATATTATTTCATGGGAGAACACAAAGAAGGCAGTAATAAAAACTCAACTGAAAAAGAAGGAAGAAGAGTTGGAAAGGAAGAAGGCAGAGTACGCTGAGAAGGCGAAGAACAAGGAAGCAATCGTCCATAAGGAAGCTGAAGAAAAGAGAGCAATGGTGATGGCCCGGCGCGGTGAAGAAGTGATCAAGGCCGAGGAGATAGCAGCTAAGTACCGTGCAACCGGAGTGACACCGAAGAAACATATCGGGTGTCTTAGGGCATA                                                                                                                                                                                                                                                               ]
[-] EMBL CB618310             [                                                                                                                                                                                                                                                                                                                                                          CAACAGCAACACCAACAAGGACCTCAAATGACAGAGATATTGCCCTTGCAAAGGTGGAGACAGACAAGCGAGAATCGTTGATCAAAGCATGGGAGGAGAACGAAAAGGCAAAAGCGGAGAACAGGGCCTTTAAGAAGTTATTGGATATTATTTCATGGGAGAACACAAAGAAGGCAGTAATAAAAACTCAACTGAAAAAGAAGGAAGAAGAGTTGGAAAGGAAGAAGGCAGAGTACGCTGAGAAGGCGAAGAACAAGGAAGCAATCGTCCATAAGGAAGCTGAAGAAAAGAGAGCAATGGTGATGGCCCGGCGCGGTGAAGAAGTGATCAAGGCCGAGGAGATAGCAGTTAAGTACCGTGCAACCGGAGTGACACCGAAGAAACATATCGGGTGTCTTAGGGCATAAGAAACATCGATCCGAGCCATATACTTGTTTTTCTTTTTCTTTGGAAAGTTATTTGTGTTGGGTTGTAACTTGTAAGTGTGTACTGTTTTTTTCTTTCGAAAAATTGGAACCATGTCATTATAATTTTGTAAAATTTAAGATATGCCATCCTGATCCACATGTCATTGATTTATGTAGGTCCTACATGTCATTGACTCATGATTTTTTCTTTGGGTGGTCTAAAACATTTCGAGTGCAGTTAATAATAACACGTT]


>consensus_5499#0 GGTATTCAGTACGCACTACGCAGCAGCCCGTGAGTCGTCGTGACCAAACGTATAGTATAC TAGCTACCAAAAGCAGTACGGTGCCTGGTTTCATTGTAAGCAGCCGCGCCGAGTCAGTAG CGTAGCGTGAGCGCGGTGAAGATGGCCGGGGAGGCATTGAAGGAGGCGGGGGCGACGCCC GCCGCAGCGAACGCGGGGGAGGAGAAGGCCGTCATCCCGGCGGCTTCGACATCGCCGGTG ATCTCCAAGACCGATGATGACACGGAGCCGCCGGCCGATGACTCCAAGGCTCTCGTCGTC TTCGTCGAGAAGGTTGCTGATAAACCTCATGCTGAGAAGGCAACAGCAACAGCAACACCA ACAAGGACCTCAAATGACAGAGATATTGCCCTTGCAAAGGTGGAGACAGACAAGCGAGAA TCGTTGATCAAAGCATGGGAGGAGAACGAAAAGGCAAAAGCGGAGAACAGGGCCTCTAAG AAGTTATTGGATATTATTTCATGGGAGAACACAAAGAAGGCAGTAATAAAAACTCAACTG AAAAAGAAGGAAGAAGAGTTGGAAAGGAAGAAGGCAGAGTACGCTGAGAAGGCGAAGAAC AAGGAAGCAATCGTCCATAAGGAAGCTGAAGAAAAGAGAGCAATGGTGATGGCCCGGCGC GGTGAAGAAGTGATCAAGGCCGAGGAGATAGCAGCTAAGTACCGTGCAACCGGAGTGACA CCGAAGAAACATATCGGGTGTCTTAGGGCATAAGAAACATCGATCCGAGCCATATACTTG TTTTTCTTTCTCTTTCGAAAGTTATTTGTGTTGGGTTGTAACTTGTAAGTGTGTACTTTT TTTTCTTTGGAAAAATTGGAACCATGCCATTATAATTTTGTAAAATTTAAGATATGCCAT CCTGATCCACATGTCATTGATTTATGTAGGTCCTACATGTCATTGACTCATGATTTTTTC TTTGGGTGGTCTAAAACATTTCGAGTGCAGTTAATAATAACACGTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)