These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5504#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [TTTTTTTTTTTTTAAAACCAAAAACCAAACTTTGGTCTGAACCAAGCCCACCCAAAGCCAAACCCATATCCAGCGGACTACGCCCTAACCCTATTGTTTTACCACATACAACTCGGGTTTAGTACTCCCTTGGACAATAACTGCCACAATCCCAAAGGGTAACTAACTGTGGGAGAATGACCTACACCCGAATACTAAGACCTGTCCCGATCCCTTAATATTAAGATGGCTCATCCACCTAAAAGCCATATACTTTTGCGGCGCACGAAAGATTTCGGAAGGGATACCCAATACCGGGGCCTAATGTGGAGTTACGAGCTAACTACGGGGGGAATACGGAGTTGGACCATACATACCCCCTCCTATCCGAAACTTAGCACTGTATCAAAACTGAGGGAAAGTATACTACTGCACAAAATCTGGTTAGCCCCGAGGCCGTAATCGTTCGACCAGCAACCATTCCAGGTTCGGTATATTAGGACTGGGAGGAAACAGTCAACCTGTATGTGTAGCCAAAACAGATCTAGACACTGGGTGGCCAACTAACAGCCACGAATCCCGCTTGGAACATTTGGAATCGACCACAGATTACTATGAAGTTTTGCACATTCACTGGCCAATAGTCTCGGGGACACCAAGACTGTGACTCTATAACAAACACCATTCGAGGTAAACGCGGTGAC] [+] EMBL CA761830 [TTTTTTTTTTTTTAAAACCAAAAACCAAACTTTGGTCTGAACCAAGCCCACCCAAAGCCAAACCCATATCCAGCGGACTACGCCCTAACCCTATTGTTTTACCACATACAACTCGGGTTTAGTACTCCCTTGGACAATAACTGCCACAATCCCAAAGGGTAACTAACTGTGGGAGAATGACCTACACCCGAATACTAAGACCTGTCCCGATCCCTTAATATTAAGATGGCTCATCCACCTAAAAGCCATATACTTTTGCGGCGCACGAAAGATTTCGGAAGGGATACCCAATACCGGGGCCTAATGTGGAGTTACGAGCTAACTACGGGGGGAATACGGAGTTGGACCATACATACCCCCTCCTATCCGAAACTTAGCACTGTATCAAAACTGAGGGAAAGTATACTACTGCACAAAATCTGGTTAGCCCCGAGGCCGTAATCGTTCGACCAGCAACCATTCCAGGTTCGGTATATTAGGACTGGGAGGAAACAGTCAACCTGTATGTGTAGCCAAAACAGATCTAGACACTGGGTGGCCAACTAACAGCCACGAATCCCGCTTGGAACATTTGGAATCGACCACAGATTACTATGAAGTTTTGCACATTCACTGGCCAATAGTCTCGGGGACACCAAGACTGTGACTCTATAACAAACACCATTCGAGGTAAACGCGGTGAC] consensusID : consensus_5504#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 676 fasta sequence [TTTTTTTTTTTTTAAAACCAAAATCCAAACTTTGTTCTGATCCAAACCCACCCGAAACCAAACACATATAAAACTGACAACGCCCTAACCCTATTGTTCTACCACAAACTACTCCGGTTTAGTTCTCCCTTGGACAATAACTCCCACCATCCCAAAGGGTAACAAACTTTGGGACGAATGAAATACACCCGAATACTAATTCTGATCCCATCCATAATATTAAGATGGCTCATCCACCTAAAAGCCATATACTTTGTCAACGCACGAAATATTTCGCAAGGGATACCCAAACCACGGCCTAATGTAGTGTTACCAGCTAACTACGGGGGGGATACTGACTTGGTCCAACATACCCCCTCCATCACGAAACTTACCACTGTATCAAAACTGACGGAAAGCATACTAGTCCAAAAAATCTGGCTAGCCCCTAGGCCATAATCGTTGATCCAAATAACCATTCCAAGTTTGGTATATTTTGACTCGGAGGAAATAGTTAACCTGTATATGTAGCCAAAACACCACTCCACACTGGGTGGCCAACTAGCAGTCCACGAATCCCGTATGAAACATTTGGAATCGACCACAGATTACTTTGAAATTTTGCACATTCACTGGCCAATGTCCTCGGGGAAACCAAGACTGTAAATCTATAACACAACAAGATTCGAAGTAAACG] [+] EMBL CA761818 [TTTTTTTTTTTTTAAAACCAAAATCCAAACTTTGTTCTGATCCAAACCCACCCGAAACCAAACACATATAAAACTGACAACGCCCTAACCCTATTGTTCTACCACAAACTACTCCGGTTTAGTTCTCCCTTGGACAATAACTCCCACCATCCCAAAGGGTAACAAACTTTGGGACGAATGAAATACACCCGAATACTAATTCTGATCCCATCCATAATATTAAGATGGCTCATCCACCTAAAAGCCATATACTTTGTCAACGCACGAAATATTTCGCAAGGGATACCCAAACCACGGCCTAATGTAGTGTTACCAGCTAACTACGGGGGGGATACTGACTTGGTCCAACATACCCCCTCCATCACGAAACTTACCACTGTATCAAAACTGACGGAAAGCATACTAGTCCAAAAAATCTGGCTAGCCCCTAGGCCATAATCGTTGATCCAAATAACCATTCCAAGTTTGGTATATTTTGACTCGGAGGAAATAGTTAACCTGTATATGTAGCCAAAACACCACTCCACACTGGGTGGCCAACTAGCAGTCCACGAATCCCGTATGAAACATTTGGAATCGACCACAGATTACTTTGAAATTTTGCACATTCACTGGCCAATGTCCTCGGGGAAACCAAGACTGTAAATCTATAACACAACAAGATTCGAAGTAAACG] [+] EMBL CA761817 [TTTTTTTTTTTTTAAAACCAAAATCCAAACTTTGTTCTGATCCAAACCCACCCGAAACCAAACACATATAAAACTGACAACGCCCTAACCCTATTGTTCTACCACAAACTACTCCGGTTTAGTTCTCCCTTGGACAATAACTCCCACCATCCCAAAGGGTAACAAACTTTGGGACGAATGAAATACACCCGAATACTAATTCTGATCCCATCCATAATATTAAGATGGCTCATCCACCTAAAAGCCATATACTTTGTCAACGCACGAAATATTTCGCAAGGGATACCCAAACCACGGCCTAATGTAGTGTTACCAGCTAACTACGGGGGGGATACTGACTTGGTCCAACATACCCCCTCCATCACGAAACTTACCACTGTATCAAAACTGACGGAAAGCATACTAGTCCAAAAAATCTGGCTAGCCCCTAGGCCATAATCGTTGATCCAAATAACCATTCCAAGTTTGGTATATTTTGACTCGGAGGAAATAGTTAACCTGTATATGTAGCCAAAACACCACTCCACACTGGGTGGCCAACTAGCAGTCCACGAATCCCGTATGAAACATTTGGAATCGACCACAGATTACTTTGAAATTTTGCACATTCACTGGCCAATGTCCTCGGGGAAACCAAGACTGTAAATCTATAACACAACAAGATTCGAAGTAAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5504#0 TTTTTTTTTTTTTAAAACCAAAAACCAAACTTTGGTCTGAACCAAGCCCACCCAAAGCCA 60 consensus_5504#1 TTTTTTTTTTTTTAAAACCAAAATCCAAACTTTGTTCTGATCCAAACCCACCCGAAACCA 60 *********************** ********** ***** **** ******* ** *** consensus_5504#0 AACCCATATCCAGCGGACTACGCCCTAACCCTATTGTTTTACCACATACAACTCGGGTTT 120 consensus_5504#1 AACACATATAAAACTGACAACGCCCTAACCCTATTGTTCTACCACAAACTACTCCGGTTT 120 *** ***** * * *** ******************* ******* ** **** ***** consensus_5504#0 AGTACTCCCTTGGACAATAACTGCCACAATCCCAAAGGGTAACTAACTGTGGGA-GAATG 179 consensus_5504#1 AGTTCTCCCTTGGACAATAACTCCCACCATCCCAAAGGGTAACAAACTTTGGGACGAATG 180 *** ****************** **** *************** **** ***** ***** consensus_5504#0 ACCTACACCCGAATACTAAGACCTGTCCCGATCCCTTAATATTAAGATGGCTCATCCACC 239 consensus_5504#1 AAATACACCCGAATACTAATTCTGATCCCA--TCCATAATATTAAGATGGCTCATCCACC 238 * **************** * **** ** ************************ consensus_5504#0 TAAAAGCCATATACTTTTGCGGCGCACGAAAGATTTCGGAAGGGATACCCAATACCGGGG 299 consensus_5504#1 TAAAAGCCATATACTTTGTCAACGCACGAAATATTTCGCAAGGGATACCCAA-ACCACGG 297 ***************** * ********* ****** ************* *** ** consensus_5504#0 CCTAATGTGGAGTTACGAGCTAACTACGGGGGGAATACGGAGTTGGACCATACATACCCC 359 consensus_5504#1 CCTAATGTAGTGTTACCAGCTAACTACGGGGGGGATACTGACTTGGTCCA-ACATACCCC 356 ******** * ***** **************** **** ** **** *** ********* consensus_5504#0 CTCCTATCCGAAACTTAGCACTGTATCAAAACTGAGGGAAAGTATACTACTGCACAAAAT 419 consensus_5504#1 CTCCATCACGAAACTTACCACTGTATCAAAACTGACGGAAAGCATACTAGTCCAAAAAAT 416 **** ********* ***************** ****** ****** * ** ***** consensus_5504#0 CTGGTTAGCCCCGAGGCCGTAATCGTTCGACCAG-CAACCATTCCAGGTTCGGTATATTA 478 consensus_5504#1 CTGGCTAGCCCCTAGGCCATAATCGTTGATCCAAATAACCATTCCAAGTTTGGTATATTT 476 **** ******* ***** ******** *** ********** *** ******** consensus_5504#0 GGACTGGGAGGAAACAGTCAACCTGTATGTGTAGCCAAAACAGATCTAGACACTGGGTGG 538 consensus_5504#1 TGACTCGGAGGAAATAGTTAACCTGTATATGTAGCCAAAACACCACTCCACACTGGGTGG 536 **** ******** *** ********* ************* ** *********** consensus_5504#0 CCAACTAACAG-CCACGAATCCCGCTTGGAACATTTGGAATCGACCACAGATTACTATGA 597 consensus_5504#1 CCAACTAGCAGTCCACGAATCCCGTATGAAACATTTGGAATCGACCACAGATTACTTTGA 596 ******* *** ************ ** *************************** *** consensus_5504#0 AGTTTTGCACATTCACTGGCCAATAGTCTCGGGGACACCAAGACTGTGACTCTATAACA- 656 consensus_5504#1 AATTTTGCACATTCACTGGCCAATGTCCTCGGGGAAACCAAGACTGTAAATCTATAACAC 656 * ********************** ******** *********** * ********* consensus_5504#0 AACACCATTCGAGGTAAACGCGGTGAC 683 consensus_5504#1 AACAAGATTCGAAGTAAACG------- 676 **** ****** ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||