These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 274 fasta sequence [NGNCGTAGCTGCCCGCCGGCGCCGCGAGGTTCGATCAGTACTCCTTCTTCCACAACAAGTGCCTCTGCGGACCGCCGCTCCCTACTCCCTGCAATTAAGCTCCCATTACTTAATTACTAGCTATGTGGTGAAATTATACATCAGCAATGCAAGCAAAATAAATAAATATATATATATATATATATATTTGTATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAATGATTAATAAAGCTGTGTTCAATTGTTTCTGGGACA] [+] EMBL AU066093 [NGNCGTAGCTGCCCGCCGGCGCCGCGAGGTTCGATCAGTACTCCTTCTTCCACAACAAGTGCCTCTGCGGACCGCCGCTCCCTACTCCCTGCAATTAAGCTCCCATTACTTAATTACTAGCTATGTGGTGAAATTATACATCAGCAATGCAAGCAAAATAAATAAATATATATATATATATATATATTTGTATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAATGATTAATAAAGCTGTGTTCAATTGTTTCTGGGACA] [+] EMBL AU223072 [ GCCCGCCGGCGCCGCGAGGTTCGATCAGTACTCCTTCTTCCACAACAAGTGCCTCTGCGGACCGCCGCTCCCTACTCCCTGCAATTAAGCTCCCATTACTTAATTACTAGCTATGTGGTGAAATTATACATCAGCAATGCAAGCAAAATAAATAAATATATATATATATATATATATTTGTATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAATGATTAATAAAGCTGTGTTCAATTGTTTCTGGGACA] consensusID : consensus_5506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 133 fasta sequence [ATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTGTATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAATGATTAATAAAGCTGTGTTCAATTGT] [-] EMBL D42972 [ATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTGTATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAATGATTAATAAAGCTGTGTTCAATTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5506#0 NGNCGTAGCTGCCCGCCGGCGCCGCGAGGTTCGATCAGTACTCCTTCTTCCACAACAAGT 60 consensus_5506#1 ------------------------------------------------------------ consensus_5506#0 GCCTCTGCGGACCGCCGCTCCCTACTCCCTGCAATTAAGCTCCCATTACTTAATTACTAG 120 consensus_5506#1 ------------------------------------------------------------ consensus_5506#0 CTATGTGGTGAAATTATACATCAGCA-ATGCAAGCAAA-ATAAATAAATATATATATATA 178 consensus_5506#1 -------------ATATATATATATATATATATATATATATATATATATATATATATATA 47 **** ** * ** * * * *** *** ************* consensus_5506#0 TATATATATTTGTATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAA 238 consensus_5506#1 TATATATATTTGTATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAA 107 ************************************************************ consensus_5506#0 TGATTAATAAAGCTGTGTTCAATTGTTTCTGGGACA 274 consensus_5506#1 TGATTAATAAAGCTGTGTTCAATTGT---------- 133 ************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||