These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 529 fasta sequence [CGCCGCCACCAGCATCCACTCCGCCGTCACCACCGTCCCCTTCCTCCTCCTCCCACCCGCCGCTGCGGGCGCCGCTGCTCATCACCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGCCGCCGCCCACCACGCCGTCGTCCTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCATGGCCTTGGGTGGCGTGTCCATGGCCATCATCGCCATGGCCTTGGGCGGCGGCGGCGGCGGCGGAGGCGGGAGCGTGAAGGGGAGGGACATGGCGGGGAGCGGATGGGCGGCCGACGCCTGCTGCACGGCGGCGACCTCCTCGACGCGGCGCTCGAGGCGGCCAATGCGCGCATCGGCCTCGTCGCGGAGGCGGCGCACGCCGTCGAGCACGTGGTAGGGTCGTGGCGGGACAGCCACCGCGCGATGGCGGTGTCGGCGGCCTCCATACGGCGGGCCAGCTGGGCGGTGCGTTACATGTTCCACCGCCGGCGCCAACAGCCGAGCGGCTAGCAGATCAAGTGGCGATGGA] [+] EMBL CB619276 [CGCCGCCACCAGCATCCACTCCGCCGTCACCACCGTCCCCTTCCTCCTCCTCCCACCCGCCGCTGCGGGCGCCGCTGCTCATCACCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGCCGCCGCCCACCACGCCGTCGTCCTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCATGGCCTTGGGTGGCGTGTCCATGGCCATCATCGCCATGGCCTTGGGCGGCGGCGGCGGCGGCGGAGGCGGGAGCGTGAAGGGGAGGGACATGGCGGGGAGCGGATGGGCGGCCGACGCCTGCTGCACGGCGGCGACCTCCTCGACGCGGCGCTCGAGGCGGCCAATGCGCGCATCGGCCTCGTCGCGGAGGCGGCGCACGCCGTCGAGCACGTGGTAGGGTCGTGGCGGGACAGCCACCGCGCGATGGCGGTGTCGGCGGCCTCCATACGGCGGGCCAGCTGGGCGGTGCGTTACATGTTCCACCGCCGGCGCCAACAGCCGAGCGGCTAGCAGATCAAGTGGCGATGGA] [+] EMBL CB636659 [ AGCATCCACTCCGCCGTCACCACCGTCCCCTTCCTCCTCCTCCCACCCGCCGCTGCGGGCGCCGCTGCTCATCACCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGCCGCCGCCCACCACGCCGTCGTCCTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCATGGCCTTGGGTGGCGTGTCCATGGCCATCATCGCCATGGCCTTGGGCGGCGGCGGCGGCGGCGGAGGCGGGAGCGTGAAGGGGAGGGACATGGCGGGGAGCGGATGGGCGGCCGACGCCTGCTGCACGGCGGCGACCTCCTCGACGCGGCGCTCGAGGCGGCCAATGCGCGCATCGGCCTCGTCGCGGAGGCGGCGCACGCCGTCGAGCACGTGGTAGGGTCGTGGCGGGACAGCCACCGCGCGATGGCGGTGTCGGCGGCCTCCATACGGCGGGCCAGCTGGGCGGTGCGTTACATGTTCCACCGCCGGCGCCAACAGC ] consensusID : consensus_5507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence [NAGANGACCCACCCAGGTGCTCAAGGAGCTNGAGGANGCNNNGAAGGCGTCGCNGCACATCNNCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGCCGCCGCCCACCACGCCGTCGTCCTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCATGGCCTTGGGTGGCGTGTCCATGGCCATCATCNCCATGGCCTTGGGCGGNGGNGGAAGACGCCGANGCNGGATCCTTNANGGGAAGNACNTCN] [+] EMBL AA754589 [NAGANGACCCACCCAGGTGCTCAAGGAGCTNGAGGANGCNNNGAAGGCGTCGCNGCACATCNNCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGCCGCCGCCCACCACGCCGTCGTCCTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCATGGCCTTGGGTGGCGTGTCCATGGCCATCATCNCCATGGCCTTGGGCGGNGGNGGAAGACGCCGANGCNGGATCCTTNANGGGAAGNACNTCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5507#0 CGCCGCCACCAGCATCCACTCCGCCGTCACCACCGTCCCCTTCCTCCTCCTCCCACCCGC 60 consensus_5507#1 --------------------NAGANGAC-CCACCCAGGTGCTCAAGGAGCTNGAGGANGC 39 * * * ***** ** ** ** consensus_5507#0 CGCTGCGGGCGCCGCTGCTCATCACCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGC 120 consensus_5507#1 NNN-GAAGGCGTCGCNGCACATCNNCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGC 98 * **** *** ** **** *********************************** consensus_5507#0 CGCCGCCCACCACGCCGTCGTCCTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCAT 180 consensus_5507#1 CGCCGCCCACCACGCCGTCGTCCTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCAT 158 ************************************************************ consensus_5507#0 GGCCTTGGGTGGCGTGTCCATGGCCATCATCGCCATGGCCTTGGGCGGCGGCGGCGGCGG 240 consensus_5507#1 GGCCTTGGGTGGCGTGTCCATGGCCATCATCNCCATGGCCTTGGGCGGNGGNGGAAGACG 218 ******************************* **************** ** ** * * consensus_5507#0 CGGAGGCGGGAGCGTGAAGGGGAGGGACATGGCGGGGAGCGGATGGGCGGCCGACGCCTG 300 consensus_5507#1 CCGANGCNGGATCCTTNANGGGAAGNACNTCN---------------------------- 250 * ** ** *** * * * **** * ** * consensus_5507#0 CTGCACGGCGGCGACCTCCTCGACGCGGCGCTCGAGGCGGCCAATGCGCGCATCGGCCTC 360 consensus_5507#1 ------------------------------------------------------------ consensus_5507#0 GTCGCGGAGGCGGCGCACGCCGTCGAGCACGTGGTAGGGTCGTGGCGGGACAGCCACCGC 420 consensus_5507#1 ------------------------------------------------------------ consensus_5507#0 GCGATGGCGGTGTCGGCGGCCTCCATACGGCGGGCCAGCTGGGCGGTGCGTTACATGTTC 480 consensus_5507#1 ------------------------------------------------------------ consensus_5507#0 CACCGCCGGCGCCAACAGCCGAGCGGCTAGCAGATCAAGTGGCGATGGA 529 consensus_5507#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||