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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5512#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1024 fasta sequence
[AACCAGTTCGCCCCCCAAATCCGACCGCCGCTCAAGCCCCACGCCGCGCCACCGGCCGCCACCGCCGCCGCGGACAGCCGCGATGGCGAAGAAGATGGGCGTCAACTCCAAGGCGGAGGCGGCCCGCGAGCGCCGCTCCGTCGCGGAGGCCGACCGCCGGGACCGCGTCGAGCGCGCCAAGGAGGAGGAGTACTGGCGCGAGGCCGAGGGCCCCAAGTCCCGCGCCGCGCGCCGCCGGGAGGAGGACGCCGAGAAGCGCGCCGAGGCCGCCGCCCGCAAGGCCGAGAACCGCCGCCTCGCGGAGGCCGAGGCCGCCTCCGCCTCCGCCTCCGCGCCGTCCAAGACGGCCGCCAGCAAGGCCTCCCGCGTCGGCGCCCCGGCGCCCAAGGTCACCGAGGCCGAGCTCGCGCGCCGCCGCGAGGACGAGCGGCTCCGCCTGGAGCGCGAGGCCGGGGCCGCCAAGAAGCGCGCCGCGCGCACCGCCGAGGAGGAGGAGTACGAGCGCGTCGTCTTGGTCGCCAACACCAACAGGGACGACTCCATCATCGAGGCGAGGTCGGTCGACGAGGCCATCGCGCGGATGTCGCTGGTTGACTCAGAGGGAGCCTTGCCCGCCGACAAGCACCCTGAGCGTCGCCTGAAGGCATCATTCAAGGCATTTGAAGAAGCAGAACTCCCTAAGTTGAAGGAAGAAAAGCCAGGCCTAACACTGAATCAGTACAAAGACATGATATGGAAGCTATGGAAGAAGTCTCCAGACAACCCTCTTAACCAGGCTGCAGAGTGATGATGCATTCCTGCTGAATTGTAGAATTTCCAAGACTTCCAAATGGGTCAGAACTTCATCAGATGCTCATGGACTGAATGTGTGGGAGATGATCAGCTTCTCGGCTAATAATTTACAAAGTGATGCAGTATATATCATGTGAGCTCGTTTTTGTTAGAGATTTTCTTCTGGTTCCTGTTGTGCGTAATGTGGTCGGGGGCACGTTCACTTGAATTTTAACGATTGTCAATTCGAAAT]
[+] EMBL AK068927 [AACCAGTTCGCCCCCCAAATCCGACCGCCGCTCAAGCCCCACGCCGCGCCACCGGCCGCCACCGCCGCCGCGGACAGCCGCGATGGCGAAGAAGATGGGCGTCAACTCCAAGGCGGAGGCGGCCCGCGAGCGCCGCTCCGTCGCGGAGGCCGACCGCCGGGACCGCGTCGAGCGCGCCAAGGAGGAGGAGTACTGGCGCGAGGCCGAGGGCCCCAAGTCCCGCGCCGCGCGCCGCCGGGAGGAGGACGCCGAGAAGCGCGCCGAGGCCGCCGCCCGCAAGGCCGAGAACCGCCGCCTCGCGGAGGCCGAGGCCGCCTCCGCCTCCGCCTCCGCGCCGTCCAAGACGGCCGCCAGCAAGGCCTCCCGCGTCGGCGCCCCGGCGCCCAAGGTCACCGAGGCCGAGCTCGCGCGCCGCCGCGAGGACGAGCGGCTCCGCCTGGAGCGCGAGGCCGGGGCCGCCAAGAAGCGCGCCGCGCGCACCGCCGAGGAGGAGGAGTACGAGCGCGTCGTCTTGGTCGCCAACACCAACAGGGACGACTCCATCATCGAGGCGAGGTCGGTCGACGAGGCCATCGCGCGGATGTCGCTGGTTGACTCAGAGGGAGCCTTGCCCGCCGACAAGCACCCTGAGCGTCGCCTGAAGGCATCATTCAAGGCATTTGAAGAAGCAGAACTCCCTAAGTTGAAGGAAGAAAAGCCAGGCCTAACACTGAATCAGTACAAAGACATGATATGGAAGCTATGGAAGAAGTCTCCAGACAACCCTCTTAACCAGGCTGCAGAGTGATGATGCATTCCTGCTGAATTGTAGAATTTCCAAGACTTCCAAATGGGTCAGAACTTCATCAGATGCTCATGGACTGAATGTGTGGGAGATGATCAGCTTCTCGGCTAATAATTTACAAAGTGATGCAGTATATATCATGTGAGCTCGTTTTTGTTAGAGATTTTCTTCTGGTTCCTGTTGTGCGTAATGTGGTCGGGGGCACGTTCACTTGAATTTTAACGATTGTCAATTCGAAAT]
[+] EMBL CB618564 [ AGACGGCCGCCCGCAAGGCCTCCCGCGTCGGCGCCCCGGCGCCCAAGGTCACCGAGGCCGAGCTCGCGCGCCGCCGCGAGGACGAGCGGCTCCGCCTGGAGCGCGAGGCCGAGGCCGCCAAGAAGCGCGCCGCGCGCACCGCCGAGGAGGAGGAGTACGAGCGCGTCGTCTTGGTCGCCAACACCAACAGGGACGACTCCATCATCGAGGCGAGGTCGGTCGACGAGGCCATCGCGCGGATGTCGCTGGTTGACTCAGAGGGAGCCTTGCCCGCCGACAAGCACCCTGAGCGTCGCCTGAAGGCATCATTCAAGGCATTTGAAGAAGCAGAACTCCCTAAGTTGAAGGAAGAAAAGCCAAGCCTAACACTGAATCAGTACAAAGACATGATATGGAAGCTATGGAAGAAGTCTCCAGACTACCCTCTTTACCAGGgttgc ]
consensusID : consensus_5512#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 800 fasta sequence
[ACACTGAATCAGTACAAAGACATGATATGGAAGCTATGGAAGAAGTCTCCAGACAACCCTCTTAACCAGGTTTGCTCACATAAAGATATTTAATTTAGCTTGTTCCTGCTTACACATAATCCTTGCACATTCTAGGTTATTGTTGTGTATTTTAATCTGCATGCTCTACCACTAAAACATTTTATTCAAAATTATGTTCCCTTAATGTTGTGAACTCAAAAAGGGTTACGATTGTCAATTGTGGTGGTCTACTCGAATGTACGAAGAATGGATGCAATTTGGGTATCGCATTAAAGTTAAGTGGGAATCTCTAGCTAGACCTAGTCCAGTGTTAAACTTAGGTTAAAAAGATGGCCCAGTGTGAAATTTACTCTTTCTAATATTTGCTTTAACTAAGGAAATCAGAAGTACTATGATTCTTAGATACTTGTATCAATTGTCCATCATCTGACTGGTATTTATATTTAGGCTGCAGAGTGATGATGCATTCCTGCTGAATTGTAGAATTTCCAAGACTTCCAAATGGGTCAGAACTTCATCAGATGCTCATGGACTGAATGTGTGGGAGATGATCAGCTTCTCGGCTAATAATTTACAAAGTGATGCAGTATATATCATGTGAGCTCGTTTTTGTTAAGAGATTTTCTTCTGGTTCCTGTTGTGCGTAATGTGGTCGGGGGCACGTTCACTTGAATTTTAACGATTGTCAATTCGAAATTGTGGTTCATACAAGATAGCTATGGCATTGGCTCTCTACCCCAATGTAGGGGACACCTGTTTCTGTTTAAAAAAAAAAAAGA]
[-] EMBL CB618565 [ACACTGAATCAGTACAAAGACATGATATGGAAGCTATGGAAGAAGTCTCCAGACAACCCTCTTAACCAGGTTTGCTCACATAAAGATATTTAATTTAGCTTGTTCCTGCTTACACATAATCCTTGCACATTCTAGGTTATTGTTGTGTATTTTAATCTGCATGCTCTACCACTAAAACATTTTATTCAAAATTATGTTCCCTTAATGTTGTGAACTCAAAAAGGGTTACGATTGTCAATTGTGGTGGTCTACTCGAATGTACGAAGAATGGATGCAATTTGGGTATCGCATTAAAGTTAAGTGGGAATCTCTAGCTAGACCTAGTCCAGTGTTAAACTTAGGTTAAAAAGATGGCCCAGTGTGAAATTTACTCTTTCTAATATTTGCTTTAACTAAGGAAATCAGAAGTACTATGATTCTTAGATACTTGTATCAATTGTCCATCATCTGACTGGTATTTATATTTAGGCTGCAGAGTGATGATGCATTCCTGCTGAATTGTAGAATTTCCAAGACTTCCAAATGGGTCAGAACTTCATCAGATGCTCATGGACTGAATGTGTGGGAGATGATCAGCTTCTCGGCTAATAATTTACAAAGTGATGCAGTATATATCATGTGAGCTCGTTTTTGTTAAGAGATTTTCTTCTGGTTCCTGTTGTGCGTAATGTGGTCGGGGGCACGTTCACTTGAATTTTAACGATTGTCAATTCGAAATTGTGGTTCATACAAGATAGCTATGGCATTGGCTCTCTACCCCAATGTAGGGGACACCTGTTTCTGTTTAAAAAAAAAAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5512#0 AACCAGTTCGCCCCCCAAATCCGACCGCCGCTCAAGCCCCACGCCGCGCCACCGGCCGCC 60
consensus_5512#1 ------------------------------------------------------------
consensus_5512#0 ACCGCCGCCGCGGACAGCCGCGATGGCGAAGAAGATGGGCGTCAACTCCAAGGCGGAGGC 120
consensus_5512#1 ------------------------------------------------------------
consensus_5512#0 GGCCCGCGAGCGCCGCTCCGTCGCGGAGGCCGACCGCCGGGACCGCGTCGAGCGCGCCAA 180
consensus_5512#1 ------------------------------------------------------------
consensus_5512#0 GGAGGAGGAGTACTGGCGCGAGGCCGAGGGCCCCAAGTCCCGCGCCGCGCGCCGCCGGGA 240
consensus_5512#1 ------------------------------------------------------------
consensus_5512#0 GGAGGACGCCGAGAAGCGCGCCGAGGCCGCCGCCCGCAAGGCCGAGAACCGCCGCCTCGC 300
consensus_5512#1 -----------------------------ACACTGAATCAGTACAAAGACATGATATGGA 31
* * * * * * * *
consensus_5512#0 GGAGGCCGAGGCCGCCTCCGCCTCCGCCTCCGCGCCGTCCAAGACGGCCGCCAGCAAGGC 360
consensus_5512#1 AGCTATGGAAGAAGTCTCCAGACAACCCTCT----TAACCAGGTTTGCTCACATAAAGAT 87
* ** * * **** **** *** * ** ** ***
consensus_5512#0 CTCCCGCGTCGGC-GCCCCGGCGCCCAAGGTCACCGAGGCCGAGCTCGCGCGCCGCCGCG 419
consensus_5512#1 ATTTAATTTAGCTTGTTCCTGCTTACACATAATCCTTGCACATTCTAGGTTATTGTTGTG 147
* * * * ** ** ** ** * * ** * * * *
consensus_5512#0 AGGACGAGCGGCTCCGCCTGGAGCGCGAGGCCGGGGCCGCCAAGAAGCGCGCCGCGCGCA 479
consensus_5512#1 TATTTTAATCTGCATGCTCT-ACCACTAAAACATTTTATTCAAAA--------TTATGTT 198
* ** * * * * * *** * *
consensus_5512#0 CCGCCGAGGAGGAGGAGTACGAGCGCGTCGTCTTGGTCGCCAACACCAACAGGGACGACT 539
consensus_5512#1 CCCTTAATGTTGTGAACTCAAAAAGGGTTA---CGATTGTCAATTGTGGT--GGTCTACT 253
** * * * * * * * * ** * * * *** ** * ***
consensus_5512#0 CCATCAT-CGAGGCGAGGTCGGTCGACGAGGCCATCGCGCGGATGTCGC-TGGTTGACTC 597
consensus_5512#1 CGAATGTACGAAGAATGGATG--CAATTTGGGTATCGCATTAAAGTTAAGTGGGAATCTC 311
* * * *** * ** * * * ** ***** * ** *** ***
consensus_5512#0 AGAGGGAGCCTTGCCCGCCGACAAGCACCCTGAGCGTCGCCTGAAGGCATCATTCAAGGC 657
consensus_5512#1 TAGCTAGACCTAGTCCAGTGTTAAAC----TTAGGTTAAAAAGATGGCCCAGTGTGAAAT 367
*** * ** * ** * * ** * ** *** * *
consensus_5512#0 ATTTGAAGAAGCAGAACTCCCTAAGTTGAAGGAAGAAAAGCCAGGCCTAACACTGAATCA 717
consensus_5512#1 TTACTCTTTCTAATATTTGCTTTAACTAAGGAAATCAGA---------AGTACTA---TG 415
* * * * * * * * * * ** * * * ***
consensus_5512#0 GTACAAAGACATGATATGGAAGCTATGGAAGAAGTCTCCAGACAACCCTCTTAACCAGGC 777
consensus_5512#1 ATTCTTAGATACT-TGTATCAATTGTCCATCA----TCTGACTGGTATTTATATTTAGGC 470
* * *** * * * * * * * * ** * ** ****
consensus_5512#0 TGCAGAGTGATGATGCATTCCTGCTGAATTGTAGAATTTCCAAGACTTCCAAATGGGTCA 837
consensus_5512#1 TGCAGAGTGATGATGCATTCCTGCTGAATTGTAGAATTTCCAAGACTTCCAAATGGGTCA 530
************************************************************
consensus_5512#0 GAACTTCATCAGATGCTCATGGACTGAATGTGTGGGAGATGATCAGCTTCTCGGCTAATA 897
consensus_5512#1 GAACTTCATCAGATGCTCATGGACTGAATGTGTGGGAGATGATCAGCTTCTCGGCTAATA 590
************************************************************
consensus_5512#0 ATTTACAAAGTGATGCAGTATATATCATGTGAGCTCGTTTTTGTTA-GAGATTTTCTTCT 956
consensus_5512#1 ATTTACAAAGTGATGCAGTATATATCATGTGAGCTCGTTTTTGTTAAGAGATTTTCTTCT 650
********************************************** *************
consensus_5512#0 GGTTCCTGTTGTGCGTAATGTGGTCGGGGGCACGTTCACTTGAATTTTAACGATTGTCAA 1016
consensus_5512#1 GGTTCCTGTTGTGCGTAATGTGGTCGGGGGCACGTTCACTTGAATTTTAACGATTGTCAA 710
************************************************************
consensus_5512#0 TTCGAAAT---------------------------------------------------- 1024
consensus_5512#1 TTCGAAATTGTGGTTCATACAAGATAGCTATGGCATTGGCTCTCTACCCCAATGTAGGGG 770
********
consensus_5512#0 ------------------------------
consensus_5512#1 ACACCTGTTTCTGTTTAAAAAAAAAAAAGA 800
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||