|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5514#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 968 fasta sequence
[CCTTAGCAGCATCGCCGCTTACACTCTCTTTACACACCTTTTCTTCTTCTTTTTTTTCTTTCTCACCAAGCTGAGCTTGCACTTTCCCTTCTTCTTAGCCTCTTCTTTTCACCAATTTCCAACCATAACAATGAAGTCCTTTGCTACGCTCGGCCTCGCGACCGCCTTCGCGAGCGTTATCAACGCACACAGTGTTTTCACCACCTTGTTGATCGACAATGTCGATCANGGCGACGGAACTTGCGTCCGCATGCCTAATGATCCTGGCACCGCAACTGACCCCATCGCGGGCATCACCAGTAACGATATGGCCTGCGGCAAGGATGGAGAGACCGCGGTTGCATTTACATGCCCGGCATCTGCTGGTAGCAAGATGACCTTTGAATGCGTCTTAACCCCGACTACTCNGCNNTCTGTAGCATCGACAAGTCTCACAANGGACCCTGTGCCGTNTACCTGAAGCANGTGACAGATATTAAGTCGAGCCCCGCCGTTGCCCCCGTTGGTTCAGATCTNGGACAATGGTACGATGAAAGGCAAGCCAGTGTGCACGAGAACTCATTTGCACACNGCTTAATGTNGTCACTTCTACTGCCTCCCNGNGTTACTACTNNTNCGCCCGACTGTGGCCNTGACAAGCCGATAGGCGANCTANTCATACTCGTGGCTAAATTTATCGAGGACCTTGGGACCCTACGTCCGGCGAGACTGTCTCATCCTTGCGNTCAGTGCCAAAGTGTAGTCTACTTGCAAACGGTGACTTATACCTTTCTGTACAGGTAACCCATGCCAACGCCCGCANGGTGTTAAAAAGGAGGGGCGGGAAGAGTATAAATAAAAGGAGGGGGGCGGNNNNTGTTNTTTNTNTAAAAAAAAAAAAATTTANAATACATACGCTGGGGGCGCCTGTATAAGAAAGAAAANNANNNANGCAAAACAATAGTAGTGTTGCGTTTTCCGAAGACAGA]
[+] EMBL AW155463 [CCTTAGCAGCATCGCCGCTTACACTCTCTTTACACACCTTTTCTTCTTCTTTTTTTTCTTTCTCACCAAGCTGAGCTTGCACTTTCCCTTCTTCTTAGCCTCTTCTTTTCACCAATTTCCAACCATAACAATGAAGTCCTTTGCTACGCTCGGCCTCGCGACCGCCTTCGCGAGCGTTATCAACGCACACAGTGTTTTCACCACCTTGTTGATCGACAATGTCGATCANGGCGACGGAACTTGCGTCCGCATGCCTAATGATCCTGGCACCGCAACTGACCCCATCGCGGGCATCACCAGTAACGATATGGCCTGCGGCAAGGATGGAGAGACCGCGGTTGCATTTACATGCCCGGCATCTGCTGGTAGCAAGATGACCTTTGAATGCGTCTTAACCCCGACTACTCNGCNNTCTGTAGCATCGACAAGTCTCACAANGGACCCTGTGCCGTNTACCTGAAGCANGTGACAGATATTAAGTCGAGCCCCGCCGTTGCCCCCGTTGGTTCAGATCTNGGACAATGGTACGATGAAAGGCAAGCCAGTGTGCACGAGAACTCATTTGCACACNGCTTAATGTNGTCACTTCTACTGCCTCCCNGNGTTACTACTNNTNCGCCCGACTGTGGCCNTGACAAGCCGATAGGCGANCTANTCATACTCGTGGCTAAATTTATCGAGGACCTTGGGACCCTACGTCCGGCGAGACTGTCTCATCCTTGCGNTCAGTGCCAAAGTGTAGTCTACTTGCAAACGGTGACTTATACCTTTCTGTACAGGTAACCCATGCCAACGCCCGCANGGTGTTAAAAAGGAGGGGCGGGAAGAGTATAAATAAAAGGAGGGGGGCGGNNNNTGTTNTTTNTNTAAAAAAAAAAAAATTTANAATACATACGCTGGGGGCGCCTGTATAAGAAAGAAAANNANNNANGCAAAACAATAGTAGTGTTGCGTTTTCCGAAGACAGA]
consensusID : consensus_5514#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 928 fasta sequence
[TTAGCAGCATCGCCGCTTACACTCTCTTTACACACCTTTTCTTCTTCTTTTTTTTCTTTCTCACCAAGCTGAGCTTGCACTTTCCCTTCTTCTTAGCCTCTTCTTTTCACCAATTTCCAACCATAACAATGAAGTCCTTTGCTACGCTCGGCCTCGCGACCGCCTTCGCGAGCGTTATCAACGCACACAGTGTTTTCACCACCTTGTTGATCGACAATGTCGATCAAGGCGACGGAACTTGCGTCCGCATGCCTAATGATCCTGGCACCGCAACTGACCCCATCGCGGGCATTACCAGTAACGATATGGCCTGCGGCAAGGATGGAGAGAACCGGGTTGCATTTACATGCCCGGCATCTTGTGGTAACAAGATGACCCTTTGAATGGCGCTTAACCCCGACTACTCGGCTTCTGGAGCATCGACAGTCTACAAAAGAACCTGTGCCGTTACCTGAAACAGTGACAATAATTAATCAACCCCGCGTTGGCCCCGGTGGTTCAGATCTGGANAATGTACATGAAAAGGANGCCATGGTCNCGAAAACTATTGCAAAACGGGTAAATGGGGTAAATTCTACTGCCTCCCCGGGGTATACCTTTCCCCCGAACTGTGCCTTCCAAGGCCAAAAGGGAATACTATTCTCCCCGTGGCCAAAATTTTATGGGACATGGGGCCCCTACCCCGGAGAAGATTTTCTTCTTGGTGCCAAAGGGGGAAAATGGTATTAGGTGAAACCGTGGCTTCATTCTTTGGGAGAGTAGTAACAGCCACGCGCCCCGGGTCACAAAAAGAAGGCGCGCGAGCGCTAAAAATAATAGGGGGGTTTAAAAAAAAATTTTTTNTTNAAANNNNNNNNTNNNNNNNNNNNNNNANNNNNNTANNTTTNNNNTTTTTTNGGGAAGGAGAGACCGGCTGCAGGGCCCCCCC]
[+] EMBL AW155431 [TTAGCAGCATCGCCGCTTACACTCTCTTTACACACCTTTTCTTCTTCTTTTTTTTCTTTCTCACCAAGCTGAGCTTGCACTTTCCCTTCTTCTTAGCCTCTTCTTTTCACCAATTTCCAACCATAACAATGAAGTCCTTTGCTACGCTCGGCCTCGCGACCGCCTTCGCGAGCGTTATCAACGCACACAGTGTTTTCACCACCTTGTTGATCGACAATGTCGATCAAGGCGACGGAACTTGCGTCCGCATGCCTAATGATCCTGGCACCGCAACTGACCCCATCGCGGGCATTACCAGTAACGATATGGCCTGCGGCAAGGATGGAGAGAACCGGGTTGCATTTACATGCCCGGCATCTTGTGGTAACAAGATGACCCTTTGAATGGCGCTTAACCCCGACTACTCGGCTTCTGGAGCATCGACAGTCTACAAAAGAACCTGTGCCGTTACCTGAAACAGTGACAATAATTAATCAACCCCGCGTTGGCCCCGGTGGTTCAGATCTGGANAATGTACATGAAAAGGANGCCATGGTCNCGAAAACTATTGCAAAACGGGTAAATGGGGTAAATTCTACTGCCTCCCCGGGGTATACCTTTCCCCCGAACTGTGCCTTCCAAGGCCAAAAGGGAATACTATTCTCCCCGTGGCCAAAATTTTATGGGACATGGGGCCCCTACCCCGGAGAAGATTTTCTTCTTGGTGCCAAAGGGGGAAAATGGTATTAGGTGAAACCGTGGCTTCATTCTTTGGGAGAGTAGTAACAGCCACGCGCCCCGGGTCACAAAAAGAAGGCGCGCGAGCGCTAAAAATAATAGGGGGGTTTAAAAAAAAATTTTTTNTTNAAANNNNNNNNTNNNNNNNNNNNNNNANNNNNNTANNTTTNNNNTTTTTTNGGGAAGGAGAGACCGGCTGCAGGGCCCCCCC]
consensusID : consensus_5514#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 920 fasta sequence
[CCTTAGCAGCATCGCCGCTTACACTCTCTATACACACCTTTTCTTCTTCTTTCTTTTCTTTCTCACCAAGCTGAGCTTGCACTTTCCCTTCTTCTTAGCCTCTTCTTTTCACCAATTTCCAACCATAACAATGAAGTCCTTTGCTACGCTCGGCCTCGCGACCGCCTTCGCGAGCGTTATCAACGCACACAGTGTTTTCACCACCTTGTTGATCGACAATGTCGATCAGGGCGACAGAACTTGCGTCCGCATGCCTAATGATCCTGGCACCGCAACTGACCCCATCGCGGGCATCACCAGTAACGATATGGCCTGCGGCAAGGATGGAGAGACCGCGGTTGCATATACATGCCCGGCATCTGCTGGTAGCAAGATGACCTTTGAATGGCGTCTTAACCCCGACTACTCGGCCTCTGGTAGCATCGACAAGTCTCACANAGGACCCTGTGCCGTTTACCTGAAGCANGTGACAGATATTAAGTCGAGCCCCGCCGCTGGCCCCGGTGGTTCAGATCTTGGACGATGGGTCGATGAAANGCANGCCATGGTGCACNGAGAAGCTAATTGCAACAACGGGCTTAATGCGGTTAAGCTTCTACTTGCCTCCNCGCGGCTACTACCTCTCCGCCCGACTGTTGCCCTCACGAGGCCGTAAGGCAATCTAATTATACTCGTGCCTCAAATTATCATGACAATGGAANATACGTCCGCCGAGATCGTCTCTCCTTGCCTCAATGCCAAATGTATTACGTTGAACCCTGATTTTACTTATTGACAGGTAACCGGCCAAGCCGCAGGTGTTAAAGAGGGCGCGGAGCAAAATATAAGGGGGGTGGGNTAGGNTTNNANAAAAAANNNTTTNNTNTTATAAATGTGTGGGGCTGGGAGTACCGCCCCCTTTATATTTCTTTTTCAAAAGG]
[+] EMBL AW155459 [CCTTAGCAGCATCGCCGCTTACACTCTCTATACACACCTTTTCTTCTTCTTTCTTTTCTTTCTCACCAAGCTGAGCTTGCACTTTCCCTTCTTCTTAGCCTCTTCTTTTCACCAATTTCCAACCATAACAATGAAGTCCTTTGCTACGCTCGGCCTCGCGACCGCCTTCGCGAGCGTTATCAACGCACACAGTGTTTTCACCACCTTGTTGATCGACAATGTCGATCAGGGCGACAGAACTTGCGTCCGCATGCCTAATGATCCTGGCACCGCAACTGACCCCATCGCGGGCATCACCAGTAACGATATGGCCTGCGGCAAGGATGGAGAGACCGCGGTTGCATATACATGCCCGGCATCTGCTGGTAGCAAGATGACCTTTGAATGGCGTCTTAACCCCGACTACTCGGCCTCTGGTAGCATCGACAAGTCTCACANAGGACCCTGTGCCGTTTACCTGAAGCANGTGACAGATATTAAGTCGAGCCCCGCCGCTGGCCCCGGTGGTTCAGATCTTGGACGATGGGTCGATGAAANGCANGCCATGGTGCACNGAGAAGCTAATTGCAACAACGGGCTTAATGCGGTTAAGCTTCTACTTGCCTCCNCGCGGCTACTACCTCTCCGCCCGACTGTTGCCCTCACGAGGCCGTAAGGCAATCTAATTATACTCGTGCCTCAAATTATCATGACAATGGAANATACGTCCGCCGAGATCGTCTCTCCTTGCCTCAATGCCAAATGTATTACGTTGAACCCTGATTTTACTTATTGACAGGTAACCGGCCAAGCCGCAGGTGTTAAAGAGGGCGCGGAGCAAAATATAAGGGGGGTGGGNTAGGNTTNNANAAAAAANNNTTTNNTNTTATAAATGTGTGGGGCTGGGAGTACCGCCCCCTTTATATTTCTTTTTCAAAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5514#0 CCTTAGCAGCATCGCCGCTTACACTCTCTTTACACACCTTTTCTTCTTCTTTTTTTTCTT 60
consensus_5514#2 CCTTAGCAGCATCGCCGCTTACACTCTCTATACACACCTTTTCTTCTTCTTTCTTTTCTT 60
consensus_5514#1 --TTAGCAGCATCGCCGCTTACACTCTCTTTACACACCTTTTCTTCTTCTTTTTTTTCTT 58
*************************** ********************** *******
consensus_5514#0 TCTCACCAAGCTGAGCTTGCACTTTCCCTTCTTCTTAGCCTCTTCTTTTCACCAATTTCC 120
consensus_5514#2 TCTCACCAAGCTGAGCTTGCACTTTCCCTTCTTCTTAGCCTCTTCTTTTCACCAATTTCC 120
consensus_5514#1 TCTCACCAAGCTGAGCTTGCACTTTCCCTTCTTCTTAGCCTCTTCTTTTCACCAATTTCC 118
************************************************************
consensus_5514#0 AACCATAACAATGAAGTCCTTTGCTACGCTCGGCCTCGCGACCGCCTTCGCGAGCGTTAT 180
consensus_5514#2 AACCATAACAATGAAGTCCTTTGCTACGCTCGGCCTCGCGACCGCCTTCGCGAGCGTTAT 180
consensus_5514#1 AACCATAACAATGAAGTCCTTTGCTACGCTCGGCCTCGCGACCGCCTTCGCGAGCGTTAT 178
************************************************************
consensus_5514#0 CAACGCACACAGTGTTTTCACCACCTTGTTGATCGACAATGTCGATCANGGCGACGGAAC 240
consensus_5514#2 CAACGCACACAGTGTTTTCACCACCTTGTTGATCGACAATGTCGATCAGGGCGACAGAAC 240
consensus_5514#1 CAACGCACACAGTGTTTTCACCACCTTGTTGATCGACAATGTCGATCAAGGCGACGGAAC 238
************************************************ ****** ****
consensus_5514#0 TTGCGTCCGCATGCCTAATGATCCTGGCACCGCAACTGACCCCATCGCGGGCATCACCAG 300
consensus_5514#2 TTGCGTCCGCATGCCTAATGATCCTGGCACCGCAACTGACCCCATCGCGGGCATCACCAG 300
consensus_5514#1 TTGCGTCCGCATGCCTAATGATCCTGGCACCGCAACTGACCCCATCGCGGGCATTACCAG 298
****************************************************** *****
consensus_5514#0 TAACGATATGGCCTGCGGCAAGGATGGAGAGACCGCGGTTGCATTTACATGCCCGGCATC 360
consensus_5514#2 TAACGATATGGCCTGCGGCAAGGATGGAGAGACCGCGGTTGCATATACATGCCCGGCATC 360
consensus_5514#1 TAACGATATGGCCTGCGGCAAGGATGGAGAGAACCGGGTTGCATTTACATGCCCGGCATC 358
******************************** * ******** ***************
consensus_5514#0 TGCTGGTAGCAAGATGACC-TTTGAATG-CGTCTTAACCCCGACTACTCNGCNNTCTGTA 418
consensus_5514#2 TGCTGGTAGCAAGATGACC-TTTGAATGGCGTCTTAACCCCGACTACTCGGCCTCTGGTA 419
consensus_5514#1 TTGTGGTAACAAGATGACCCTTTGAATGGCG-CTTAACCCCGACTACTCGGCTTCTGG-A 416
* ***** ********** ******** ** ***************** ** * *
consensus_5514#0 GCATCGACAAGTCTCACAANGGACCCTGTGCCGTNTACCTGAAGCANGTGACAGATATTA 478
consensus_5514#2 GCATCGACAAGTCTCACANAGGACCCTGTGCCGTTTACCTGAAGCANGTGACAGATATTA 479
consensus_5514#1 GCATCGACA-GTCT-ACAAAAGAACCTGTGCCGTT-ACCTGAAACAG-TGACAATAATTA 472
********* **** *** ** ********** ******* ** ***** ****
consensus_5514#0 AGTCGAGCCCCGCCGTTGCCCCCGTTGGTTCAGATCTNGGACAATGGTACGATGAAAGGC 538
consensus_5514#2 AGTCGAGCCCCGCCGCTGGCCCCGGTGGTTCAGATCTTGGACGATGGGTCGATGAAANGC 539
consensus_5514#1 ATC--AACCCCGC-GTTGGCCCCGGTGGTTCAGATCT-GGANAATGTAC--ATGAAAAGG 526
* * ****** * ** ***** ************ *** *** ****** *
consensus_5514#0 AAGCCAGTGTGCACG-AGAACTCATTTGCA-CACNG--CTTAATGTNGTCA--CTTCTAC 592
consensus_5514#2 ANGCCATGGTGCACNGAGAAGCTAATTGCAACAACGGGCTTAATGCGGTTAAGCTTCTAC 599
consensus_5514#1 ANGCCATGGT-CNCG-AAAACT--ATTGCAAAACGGG--TAAATGGGGTAAA--TTCTAC 578
* **** ** * * * ** ***** * * * **** ** * ******
consensus_5514#0 T-GCCTCCCNGNG-TTACTACTNNTNCGCCCGACTGTGGCCNTGACAAG-CCGATAGGCG 649
consensus_5514#2 TTGCCTCCNCGCGGCTACTACCTCTCCGCCCGACTGTTGCCCTCACGAGGCCGTAAGGCA 659
consensus_5514#1 T-GCCTCCCCGGGGT--ATACCTTTCCCCCGAACTGTG--CCTTCCAAGGCCAAAAGGGA 633
* ****** * * *** * * ** ***** * * * ** ** ***
consensus_5514#0 ANCTANTCATACTCGTGGCTAAATTTATCGAGGACCTTGGGACCCTACGTCCGGCGAGAC 709
consensus_5514#2 ATCTAATTATACTCGTGCCTCAAATTATC-ATGACAATGGAANA-TACGTCCGCCGAGAT 717
consensus_5514#1 ATACTATTCTCCCCGTGGCCAAAATTTTATGGGACATGGGGCCCCTACCCCGGAGAAGAT 693
* * * * **** * ** ** * *** ** *** * * ***
consensus_5514#0 TGTCTCATCCTTGCGNTCAGTGCCAAAGTGTAGTCTACTTGCAAACGGTGACTTATACCT 769
consensus_5514#2 CGTCTC-TCCTTGC-CTCAATGCCAAA-TGTATTACGTT---GAACCCTGATTT-TAC-- 768
consensus_5514#1 TTTCTTCTTGGTGCCAAAGGGGGAAAATGGTATTAGGTG---AAACCGTGGCTT-CAT-T 748
*** * *** * *** *** * *** ** ** *
consensus_5514#0 TTCTGTACAGGTAACCCATGCCAACGCCCGCANGGTGTTAAAAAGGAGGGGCGGGAAGAG 829
consensus_5514#2 TTATTGACAGGTAACCG--GCCAA--GCCGCAGG-TGTTAAAGAGGGCGCG-GAGCAAAA 822
consensus_5514#1 CTTTGGGAGAGTAGTAACAGCCACGCGCCCCGGG-TCACAAAAAGAAGGCGCGCGAGCGC 807
* * *** **** ** * * * *** ** * * * *
consensus_5514#0 TATAAATAAAAGGAGGGGGGCGGNNNNTGTTNTTTNTNTAAAAAAAAAAAAATTTANAAT 889
consensus_5514#2 TATAA---------GGGGGGTGGGNTAGGNTTNNANAAAAAANNNTTTNNTNTTATAAAT 873
consensus_5514#1 TAAAAATAATAGG-GGGGTTTAAAAAAAAATTTTTTNTTNAAANNNNNNNNTNNNNNNNN 866
** ** **** * **
consensus_5514#0 ACATACG-CTGGGGGCGCCTGTATAAGAAAGAAAANNANNNANGCAAAACAATAGTAGTG 948
consensus_5514#2 GTGTGGGGCTGGGAGTACCGCCCCCTTTAT----ATTTCTTTTTCAAAAGG--------- 920
consensus_5514#1 NNNNNNA--NNNNNNTANNTTTNNNNTTT------TTTNGGGAAGGAGAGACCGGCTGCA 918
* *
consensus_5514#0 TTGCGTTTTCCGAAGACAGA 968
consensus_5514#2 --------------------
consensus_5514#1 GGGCCCCCCC---------- 928
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||