These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 933 fasta sequence [GTGGAAGACGACGAAGCGGGCGGCACCGCACCGCACCGAGGAGGAGGAGGAAGCGCGGCGAAGCTTTCGGTGGGATAGCTGCGTCGCGTCGCCATCGAGGAGCAGCTATGGTGGTGGCGAGCTAGCTCAAGGTACGCACGCGCGGTGGAGGAGGAGGAGGAGGAGGAGGAAGGAGAAGAGGGGAGGAGGAGGAGGAGGAGGCAGTGATGGTCCTGTGCTCCATGCGCAAATCGTTCAAGGACTCGCTCAAGGTGCTCGAGGCTGACATCCAGCATGCCAACACCCTGTGAGTGTGTGCTCTCTGTTTTTTTGTTTTTTTTTCATCGTATTCTGTTCAACTTTCCCCAAATTTTCGTTCTCGCAGTGTTCGCCGTTTGGTTTTCGTTCTAGACTCGTACCGTGCGTGCTGATAGATCCGATGTGCGCGATGATGATGATGAAGAAGTAGGAGACAGTTAGTTAGGAATTCATGCTTTGTGTATGAATGGTGGTTAGTAGTAGCAGTAATCCGGTGGGGGTGAGTTGATGCACACCATTCACAGTGAAAGTGGTTGGATTCGACAGGGCCTCGGATTTCTCGAGGGATTATGACGGGGCTTGCCTCCAGATGCGGATGTCGTACAGCCCCGCCGCGCAGTTCTTCCTCTTCCTGGTGCAGTGGACGGATTGTAGCCTTGCCGGTGCTCTTGGCCTCCTCAGGATTCTCATTTATAAGGTTGCGTGTATGCGTGCGTGGTGCGAGTTCAGAATTCAAGTTTGCATATTGTCAGTGACTTTTTTTTAATCTAACGATTTTTTTGTTCGGCTTCGTTTGTTCATCAGGTTTATGTAGATGGAACGACCACCTTGTCAACTCATGAAAGGAAAGCGAGCATTAGGGAATTCTATGCTGTTATATTTCCCTCACTCATGCAACTCCACAAGGGTATCAGC] [+] EMBL AK099987 [GTGGAAGACGACGAAGCGGGCGGCACCGCACCGCACCGAGGAGGAGGAGGAAGCGCGGCGAAGCTTTCGGTGGGATAGCTGCGTCGCGTCGCCATCGAGGAGCAGCTATGGTGGTGGCGAGCTAGCTCAAGGTACGCACGCGCGGTGGAGGAGGAGGAGGAGGAGGAGGAAGGAGAAGAGGGGAGGAGGAGGAGGAGGAGGCAGTGATGGTCCTGTGCTCCATGCGCAAATCGTTCAAGGACTCGCTCAAGGTGCTCGAGGCTGACATCCAGCATGCCAACACCCTGTGAGTGTGTGCTCTCTGTTTTTTTGTTTTTTTTTCATCGTATTCTGTTCAACTTTCCCCAAATTTTCGTTCTCGCAGTGTTCGCCGTTTGGTTTTCGTTCTAGACTCGTACCGTGCGTGCTGATAGATCCGATGTGCGCGATGATGATGATGAAGAAGTAGGAGACAGTTAGTTAGGAATTCATGCTTTGTGTATGAATGGTGGTTAGTAGTAGCAGTAATCCGGTGGGGGTGAGTTGATGCACACCATTCACAGTGAAAGTGGTTGGATTCGACAGGGCCTCGGATTTCTCGAGGGATTATGACGGGGCTTGCCTCCAGATGCGGATGTCGTACAGCCCCGCCGCGCAGTTCTTCCTCTTCCTGGTGCAGTGGACGGATTGTAGCCTTGCCGGTGCTCTTGGCCTCCTCAGGATTCTCATTTATAAGGTTGCGTGTATGCGTGCGTGGTGCGAGTTCAGAATTCAAGTTTGCATATTGTCAGTGACTTTTTTTTAATCTAACGATTTTTTTGTTCGGCTTCGTTTGTTCATCAGGTTTATGTAGATGGAACGACCACCTTGTCAACTCATGAAAGGAAAGCGAGCATTAGGGAATTCTATGCTGTTATATTTCCCTCACTCATGCAACTCCACAAGGGTATCAGC] consensusID : consensus_5515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 451 fasta sequence [GNANCGTGNGGNCNGGNACGTTNGGCNAACGAAGCGGGCGGCACCG-ACCGCACCGAGGAGGAGNAGGAAGCNCGGCGAANTTTCGGTGGGATANCTGCTTCGCGTCGCCATCNAGGAGCAGCTATGGTGGTGGCNAGCTAGCTCAAGGTACGCACGCCCGGTGGAGGAGGAGGAGGAGGAGGAGGAAGNAGAAGAGGGGAGGAGGAGGAGGAGGAGGCAGTNATGGTCCTNTNCTTCATGCGCAAATCGTTCAAGGACTCGCTCAAGGTGCTCGAGGCTTGACATCCAGCATGCCAACACCCTGGCCTCGGATTTCTCGAGGGATTATGACGGGGCTTTCCTNCAGATGCGGATGTCGTACAGCCCCGCCGCGCAGTTCTTTCCTCTTCCTTGTNCAGTTGACGGATTTTAGCTTTCCGGTTCTCTTTGCCTCTAAGATCTATTATAAGTT] [+] EMBL OSS1749A [GNANCGTGNGGNCNGGNACGTTNGGCNAACGAAGCGGGCGGCACCG ACCGCACCGAGGAGGAGNAGGAAGCNCGGCGAANTTTCGGTGGGATANCTGCTTCGCGTCGCCATCNAGGAGCAGCTATGGTGGTGGCNAGCTAGCTCAAGGTACGCACGCCCGGTGGAGGAGGAGGAGGAGGAGGAGGAAGNAGAAGAGGGGAGGAGGAGGAGGAGGAGGCAGTNATGGTCCTNTNCTTCATGCGCAAATCGTTCAAGGACT ] [+] EMBL OSS1859A [ GCGGGCGGCACCGCACCGCACCGAGGAGGAGGAGGAAGCGCGGCGAAGTTTCGGTGGGATAGCTGCGTCGCGTCGCCATCGAGGAGCAGCTATGGTGGTGGCGAGCTAGCTCAAGGTACGCACGCGCGGTGGAGGAGGAGGAGGAGGAGGAGGAAGGAGAAGAGGGGAGGAGGAGGAGGAGGAGGCAGTTATGGTCCTGTGCTCCATGCGCAAATCGTTCAAGGACTCGCTCAAGGTGCTCGAGGCTTGACATCCAGCATGCCAACACCCTGGCCTCGGATTTCTCGAGGGATTATGACGGGGCTTTCCTNCAGATGCGGATGTCGTACAGCCCCGCCGCGCAGTTCTTTCCTCTTCCTTGTNCAGTTGACGGATTTTAGCTTTCCGGTTCTCTTTGCCTCTAAGATCTATTATAAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5515#0 -----------------GTGGAAGACGA-CGAAGCGGGCGGCACCGCACCGCACCGAGGA 42 consensus_5515#1 GNANCGTGNGGNCNGGNACGTTNGGCNAACGAAGCGGGCGGCACCG-ACCGCACCGAGGA 59 * * * * ***************** ************* consensus_5515#0 GGAGGAGGAAGCGCGGCGAAGCTTTCGGTGGGATAGCTGCGTCGCGTCGCCATCGAGGAG 102 consensus_5515#1 GGAGNAGGAAGCNCGGCGAAN-TTTCGGTGGGATANCTGCTTCGCGTCGCCATCNAGGAG 118 **** ******* ******* ************* **** ************* ***** consensus_5515#0 CAGCTATGGTGGTGGCGAGCTAGCTCAAGGTACGCACGCGCGGTGGAGGAGGAGGAGGAG 162 consensus_5515#1 CAGCTATGGTGGTGGCNAGCTAGCTCAAGGTACGCACGCCCGGTGGAGGAGGAGGAGGAG 178 **************** ********************** ******************** consensus_5515#0 GAGGAGGAAGGAGAAGAGGGGAGGAGGAGGAGGAGGAGGCAGTGATGGTCCTGTGCTCCA 222 consensus_5515#1 GAGGAGGAAGNAGAAGAGGGGAGGAGGAGGAGGAGGAGGCAGTNATGGTCCTNTNCTTCA 238 ********** ******************************** ******** * ** ** consensus_5515#0 TGCGCAAATCGTTCAAGGACTCGCTCAAGGTGCTCGAGGCT-GACATCCAGCATGCCAAC 281 consensus_5515#1 TGCGCAAATCGTTCAAGGACTCGCTCAAGGTGCTCGAGGCTTGACATCCAGCATGCCAAC 298 ***************************************** ****************** consensus_5515#0 ACCCTGTGAGTGTGTGCTCTCTGTTTTTTTGTTTTTTTTTCATCGTATTCTGTTCAACTT 341 consensus_5515#1 ACCCTGG----------CCTCGGATTTCTCGAGGGATTATGACGGGGCTTTCCTNCAGAT 348 ****** *** * *** * * ** * * * * * * * * consensus_5515#0 TCCCCAAATTTTCGTTCTCGCAGTGTTCGCCGTTTGGTTTTCGTTCTAGACTCGTACCGT 401 consensus_5515#1 GCGGATGTCGTACAGCCCCGCCGCGCA-GTTCTTTCCTCTTCCTTGTNCAGTTGACGGAT 407 * * * * *** * * * *** * *** ** * * * * * consensus_5515#0 GCGTGCTGATAGATCCGATGTGCGCGATGATGATGATGAAGAAGTAGGAGACAGTTAGTT 461 consensus_5515#1 TTTAGCTTTCCGGTTCTCTTTGC-CTCTAAGATCTATTATAAGTT--------------- 451 *** * * * * *** * * * ** * * * consensus_5515#0 AGGAATTCATGCTTTGTGTATGAATGGTGGTTAGTAGTAGCAGTAATCCGGTGGGGGTGA 521 consensus_5515#1 ------------------------------------------------------------ consensus_5515#0 GTTGATGCACACCATTCACAGTGAAAGTGGTTGGATTCGACAGGGCCTCGGATTTCTCGA 581 consensus_5515#1 ------------------------------------------------------------ consensus_5515#0 GGGATTATGACGGGGCTTGCCTCCAGATGCGGATGTCGTACAGCCCCGCCGCGCAGTTCT 641 consensus_5515#1 ------------------------------------------------------------ consensus_5515#0 TCCTCTTCCTGGTGCAGTGGACGGATTGTAGCCTTGCCGGTGCTCTTGGCCTCCTCAGGA 701 consensus_5515#1 ------------------------------------------------------------ consensus_5515#0 TTCTCATTTATAAGGTTGCGTGTATGCGTGCGTGGTGCGAGTTCAGAATTCAAGTTTGCA 761 consensus_5515#1 ------------------------------------------------------------ consensus_5515#0 TATTGTCAGTGACTTTTTTTTAATCTAACGATTTTTTTGTTCGGCTTCGTTTGTTCATCA 821 consensus_5515#1 ------------------------------------------------------------ consensus_5515#0 GGTTTATGTAGATGGAACGACCACCTTGTCAACTCATGAAAGGAAAGCGAGCATTAGGGA 881 consensus_5515#1 ------------------------------------------------------------ consensus_5515#0 ATTCTATGCTGTTATATTTCCCTCACTCATGCAACTCCACAAGGGTATCAGC 933 consensus_5515#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||