cluster # 5516

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Oryza sativa
cluster # 5516 cluster # 5516 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5516#0 length = 535 sequences # 1

consensus_5516#1 length = 469 sequences # 2

consensusID : consensus_5516#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence

                              [GAACTAGTCTCGAGTTTTTTTTTTTTTGTGTTTTTTTTTTTTTGAACAATGAAATCCTTATTTATTTGGTTTCTTTTATGCATACAAGGAAAATGATGTTATAAAATATTTTGACTTTGGTCAAAGTCAAACTACATTTATATTCAAATCTATAACTAATATAAATATTCGGATTTTTTCGGTCGTAACATCCGTCCTTCATCGCGTTTTCATCCGTCATTACGGACTAATTTTTCCTCATCCGATTCATGGCGCACCTCCCCTCCAAATCCCACATCCAATCCAACCCAAAAACAAAATCTCAATCTCAATCCCAATCCAAATACAAATTGGAATCATTACAAAATCCTTAAAAAAACACTTTTTAAAAGAATCCCAGAACCTTTTTTTTTCAACACCAATGACATCACAGAAACTTCAAAGCCCCAAAATTGCCAACCCGGAAGGGAAGGTGCCCGTCTTCTTTGTTAAGGGAACCCCGGCCCACTTTTCCTTTCTTTCCTTTGGATTCGGGGGAGGGAAGGTGCCTTTCCTT]

[+] EMBL AW155506             [GAACTAGTCTCGAGTTTTTTTTTTTTTGTGTTTTTTTTTTTTTGAACAATGAAATCCTTATTTATTTGGTTTCTTTTATGCATACAAGGAAAATGATGTTATAAAATATTTTGACTTTGGTCAAAGTCAAACTACATTTATATTCAAATCTATAACTAATATAAATATTCGGATTTTTTCGGTCGTAACATCCGTCCTTCATCGCGTTTTCATCCGTCATTACGGACTAATTTTTCCTCATCCGATTCATGGCGCACCTCCCCTCCAAATCCCACATCCAATCCAACCCAAAAACAAAATCTCAATCTCAATCCCAATCCAAATACAAATTGGAATCATTACAAAATCCTTAAAAAAACACTTTTTAAAAGAATCCCAGAACCTTTTTTTTTCAACACCAATGACATCACAGAAACTTCAAAGCCCCAAAATTGCCAACCCGGAAGGGAAGGTGCCCGTCTTCTTTGTTAAGGGAACCCCGGCCCACTTTTCCTTTCTTTCCTTTGGATTCGGGGGAGGGAAGGTGCCTTTCCTT]




>consensus_5516#0
GAACTAGTCTCGAGTTTTTTTTTTTTTGTGTTTTTTTTTTTTTGAACAATGAAATCCTTA
TTTATTTGGTTTCTTTTATGCATACAAGGAAAATGATGTTATAAAATATTTTGACTTTGG
TCAAAGTCAAACTACATTTATATTCAAATCTATAACTAATATAAATATTCGGATTTTTTC
GGTCGTAACATCCGTCCTTCATCGCGTTTTCATCCGTCATTACGGACTAATTTTTCCTCA
TCCGATTCATGGCGCACCTCCCCTCCAAATCCCACATCCAATCCAACCCAAAAACAAAAT
CTCAATCTCAATCCCAATCCAAATACAAATTGGAATCATTACAAAATCCTTAAAAAAACA
CTTTTTAAAAGAATCCCAGAACCTTTTTTTTTCAACACCAATGACATCACAGAAACTTCA
AAGCCCCAAAATTGCCAACCCGGAAGGGAAGGTGCCCGTCTTCTTTGTTAAGGGAACCCC
GGCCCACTTTTCCTTTCTTTCCTTTGGATTCGGGGGAGGGAAGGTGCCTTTCCTT

consensusID : consensus_5516#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 469
fasta sequence

                              [TTTTTGAATGTCGTCCCGTCTGAAGTAACAAACGGAACAATGAAATTATTATTTATTT-GGTTTCTTTTATGCATACAAGGAAAATGATTACTACTACACCCTCCATTTTAGGTTAT-AAAATATTTTGACTTTGGTCAAAGTCAAACTACATTTATATTCAAATCTATAACTAATATAAATATTCGGATTTTTTCGGTCGTAACATCCGTCCTTCATCGCGTTTTCATCC-GTCATTACGGACTAATTTTTCCTCATCCGATTCA-TGGCGCACCTCCCC-TCCAAA-TCCCACATCCAATCCAACCCAAAA-ACAAAATCTCAATCTCAA-TCCCAA-TCCAAATACAAATTGGAAT-CATCACAAAATCCTAGAGAAAA-CACTACTAAA-AGATCACAAGAACATATTT-CAT-CAA-CAACAACGACAACACAAGAACATCAC-AAGCACAAA-A-A--TGCCGACACCGGAAGGGGACGGGTG]

[-] EMBL BM419809             [TTTTTGAATGTCGTCCCGTCTGAAGTAACAAACGGAACAATGAAATTATTATTTATTT GGTTTCTTTTATGCATACAAGGAAAATGATTACTACTACACCCTCCATTTTAGGTTAT AAAATATTTTGACTTTGGTCAAAGTCAAACTACATTTATATTCAAATCTATAACTAATATAAATATTCGGATTTTTTCGGTCGTAACATCCGTCCTTCATCGCGTTTTCATCC GTCATTACGGACTAATTTTTCCTCATCCGATTCA TGGCGCACCTCCCC TCCAAA TCCCACATCCAATCCAACCCAAAA ACAAAATCTCAATCTCAA TCCCAA TCCAAATACAAATTGGAAT CATCACAAAATCCTAGAGAAAA CACTACTAAA AGATCACAAGAACATATTT CAT CAA CAACAACGACAACACAAGAACATCAC AAGCACAAA A A  TGCCGACACCGGAAGGG        ]
[-] EMBL BM419059             [ TTTTGAATGTCGTCCCGTCTGAAGTAACAAACGGAACAATGAAATTATTATTTATTTGGGTTTCTTTTATGCATACAAGGAAAATGATTACTACTACACCCTCCATTTTAGGTTATCAAAATA TTTGACTTGGGTCAAAGTCAAACTACATTTATATTCAAATCTATAACTAATATAAATATTCGGA TTTTTCGGTCGTAACATCCGTCCTTCATCGCGTTTTCATCCGGTCATTACGGACTAATTTTTCCTCATCCGATTCAGTGGCGCACCTCCCCGTCCAAAGTCCCACATCCAATCCAACCCAAAAGACAAAATCTCAATCTCAAGTCCCAAGTCCAAATACAAATGGGAATCCATCACAAAATCCTAGAGAAAACCACTACTAAACAGATCACAAGAACATATTTCCATCCAACCAACAACGACAACACAAGAACATCACAAAGCACAAACACANGTGCCGACACCGGAACGGGACGGGTG]




>consensus_5516#1
TTTTTGAATGTCGTCCCGTCTGAAGTAACAAACGGAACAATGAAATTATTATTTATTTGG
TTTCTTTTATGCATACAAGGAAAATGATTACTACTACACCCTCCATTTTAGGTTATAAAA
TATTTTGACTTTGGTCAAAGTCAAACTACATTTATATTCAAATCTATAACTAATATAAAT
ATTCGGATTTTTTCGGTCGTAACATCCGTCCTTCATCGCGTTTTCATCCGTCATTACGGA
CTAATTTTTCCTCATCCGATTCATGGCGCACCTCCCCTCCAAATCCCACATCCAATCCAA
CCCAAAAACAAAATCTCAATCTCAATCCCAATCCAAATACAAATTGGAATCATCACAAAA
TCCTAGAGAAAACACTACTAAAAGATCACAAGAACATATTTCATCAACAACAACGACAAC
ACAAGAACATCACAAGCACAAAAATGCCGACACCGGAAGGGGACGGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5516#0      GAACTAGTCTCGAGTTTTTTTTTTTTTGTGTTTTTTTTTTTTTGAACAATGAAATCCTTA 60
consensus_5516#1      ------TTTTTGAATGTCGTCCCGTCTGAAGTAACAAA---CGGAACAATGAAATTATTA 51
                             * * ** * *  *    * **   *           ************  ***

consensus_5516#0      TTTATTTGGTTTCTTTTATGCATACAAGGAAAATGAT----------------------- 97
consensus_5516#1      TTTATTTGGTTTCTTTTATGCATACAAGGAAAATGATTACTACTACACCCTCCATTTTAG 111
                      *************************************                       

consensus_5516#0      GTTATAAAATATTTTGACTTTGGTCAAAGTCAAACTACATTTATATTCAAATCTATAACT 157
consensus_5516#1      GTTATAAAATATTTTGACTTTGGTCAAAGTCAAACTACATTTATATTCAAATCTATAACT 171
                      ************************************************************

consensus_5516#0      AATATAAATATTCGGATTTTTTCGGTCGTAACATCCGTCCTTCATCGCGTTTTCATCCGT 217
consensus_5516#1      AATATAAATATTCGGATTTTTTCGGTCGTAACATCCGTCCTTCATCGCGTTTTCATCCGT 231
                      ************************************************************

consensus_5516#0      CATTACGGACTAATTTTTCCTCATCCGATTCATGGCGCACCTCCCCTCCAAATCCCACAT 277
consensus_5516#1      CATTACGGACTAATTTTTCCTCATCCGATTCATGGCGCACCTCCCCTCCAAATCCCACAT 291
                      ************************************************************

consensus_5516#0      CCAATCCAACCCAAAAACAAAATCTCAATCTCAATCCCAATCCAAATACAAATTGGAATC 337
consensus_5516#1      CCAATCCAACCCAAAAACAAAATCTCAATCTCAATCCCAATCCAAATACAAATTGGAATC 351
                      ************************************************************

consensus_5516#0      ATTACAAAATCCTTAAAAAAACACTTTTTAAAAGAATCCCAGAACCTTTTTTTTTCAACA 397
consensus_5516#1      ATCACAAAATCCTAGAGAAAACACTACT--AAAAGATCACAAGAACATATTTCATCAACA 409
                      ** **********  * ********  *  ***  *** **  * * * ***  ******

consensus_5516#0      CCAATGACATCACAGAAACTTCAAAGCCCCAAAATTGCCAAC-CCGGAAGGGAAGGTGCC 456
consensus_5516#1      ACAACGACAACACAAGAACATCACAAGCACAAAAATGCCGACACCGGAAGGGGACGGGTG 469
                       *** **** ****  *** *** *  * ***** **** ** ********* * * *  

consensus_5516#0      CGTCTTCTTTGTTAAGGGAACCCCGGCCCACTTTTCCTTTCTTTCCTTTGGATTCGGGGG 516
consensus_5516#1      ------------------------------------------------------------
                                                                                  

consensus_5516#0      AGGGAAGGTGCCTTTCCTT 535
consensus_5516#1      -------------------