These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 785 fasta sequence [TACAAGTATATTAGCGGGTCTTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCTGATCATTAGTGCTTAAGGTGCAAAGCTAATTACCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGCTGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAGGCGATATACATGGCATTTAGCAGACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGAAGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAAAAGTTGCCCATCCTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATTCTGTCTGCTGCTTCAACTTGAATGTCCATGGTTTTTCGACCTCCCATGAGTGGCTGAATGTAGGTCTTTGATATTCCTTAGCAAAGTATATTTTATCTTGCTTCATGAATGTATTGTTCATAGTCACAATGTAGAACTTGTTTGAAGGAGGAACTGTCCAATAATGTCGGTGTAGTTCTTGATGTCAGGTGTCACTTTTGTATCCTTCAGCAAAAGCAGACATTGTTGAATTTGCGTGTGCTATTGCCGGCCTGAGTGCTCTCAAGCAGGTCGATCCAGCCGAAGGCGAACGACGTCGAACGCTGAGATCGATGCCTGAGTCAGGCGTGATTCTCAGGGCAGTAACCAAACACACTCTAAATCCAGACTGCGCGTGACTGATTAAAGAGTTAAGCTGGATAGTATTAACCACC] [+] EMBL CB631211 [TACAAGTATATTAGCGGGTCTTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCTGATCATTAGTGCTTAAGGTGCAAAGCTAATTACCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGCTGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAGGCGATATACATGGCATTTAGCAGACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGAAGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAAAAGTTGCCCATCCTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATTCTGTCTGCTGCTTCAACTTGAATGTCCATGGTTTTTCGACCTCCCATGAGTGGCTGAATGTAGGTCTTTGATATTCCTTAGCAAAGTATATTTTATCTTGCTTCATGAATGTATTGTTCATAGTCACAATGTAGAACTTGTTTGAAGGAGGAACTGTCCAATAATGTCGGTGTAGTTCTTGATGTCAGGTGTCACTTTTGTATCCTTCAGCAAAAGCAGACATTGTTGAATTTGCGTGTGCTATTGCCGGCCTGAGTGCTCTCAAGCAGGTCGATCCAGCCGAAGGCGAACGACGTCGAACGCTGAGATCGATGCCTGAGTCAGGCGTGATTCTCAGGGCAGTAACCAAACACACTCTAAATCCAGACTGCGCGTGACTGATTAAAGAGTTAAGCTGGATAGTA ] [-] EMBL CF196913 [ AATGTAGGNCTTTGATANNNNNNAGCAAAGTATATTTTATCTTGCTTCATGAATGTATNNNNCATAGTCACAATGTAGAACTTGTTTGAAGGAGGAACTGTCCAATAATGTCGGTGTAGTTCTTGATGTCAGGTGTCACTTTTGTATCCTTCAGCAAAAGCAGACATTGTTGAATTTGCGTGTGCTATTGCCGGCCTGAGTGCTCTCAAGCAGGTCGATCCAGCCGAAGGCGAACGACGTCGAACGCTGAGATCGATGCCTGAGTCAGGCGTGATTCTCAGGGCAGTAACCAAACACACTCTAAATCCAGACTGCGCGTGACTGATTAGAGAGTTAAGCTGGATAGTATTAACCACC] consensusID : consensus_5523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [TTTTTTTTTTTTAAGGGAAAGGAAGCAGGCATTGATAAATAGATCATATACAAGTATATTAGCGGGTAGTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCCGATCATTAGTGCTTAAGGTGCAAAGCTAATTAGCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGCTGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAGGCGATATACATGGCACTTAGCAAACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGAAGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAGAAGTTGCCCATCCTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATTCTGCCTGCTGCTTCAACTTGAATGCCCATGGTTTTTCTACCTCCCATGAGCGGCTGATGTAGGTCTTTGATATTCCTTAGCAAAGGATATTTTATCTTGCTTTAAGAATGTATTGCTGATAGTTACAACGTACAGCTTGCTTGGAGGAGGACCTGTTCAATAATGGCGGTGCCGCTCCTGATGCCAGGGGCAACTTTCGTATCGCTAAGGCAAAGAACACATTGATGAATTGCGGTGTGCTATGGACGGGCCTGGGAGAGG] [+] EMBL CA759197 [TTTTTTTTTTTTAAGGGAAAGGAAGCAGGCATTGATAAATAGATCATATACAAGTATATTAGCGGGTAGTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCCGATCATTAGTGCTTAAGGTGCAAAGCTAATTAGCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGCTGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAGGCGATATACATGGCACTTAGCAAACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGAAGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAGAAGTTGCCCATCCTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATTCTGCCTGCTGCTTCAACTTGAATGCCCATGGTTTTTCTACCTCCCATGAGCGGCTGATGTAGGTCTTTGATATTCCTTAGCAAAGGATATTTTATCTTGCTTTAAGAATGTATTGCTGATAGTTACAACGTACAGCTTGCTTGGAGGAGGACCTGTTCAATAATGGCGGTGCCGCTCCTGATGCCAGGGGCAACTTTCGTATCGCTAAGGCAAAGAACACATTGATGAATTGCGGTGTGCTATGGACGGGCCTGGGAGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5523#0 ------------------------------------------------TACAAGTATATT 12 consensus_5523#1 TTTTTTTTTTTTAAGGGAAAGGAAGCAGGCATTGATAAATAGATCATATACAAGTATATT 60 ************ consensus_5523#0 AGCGGGTCTTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCTGATCATTAGTG 72 consensus_5523#1 AGCGGGTAGTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCCGATCATTAGTG 120 ******* *************************************** *********** consensus_5523#0 CTTAAGGTGCAAAGCTAATTACCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGC 132 consensus_5523#1 CTTAAGGTGCAAAGCTAATTAGCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGC 180 ********************* ************************************** consensus_5523#0 TGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAG 192 consensus_5523#1 TGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAG 240 ************************************************************ consensus_5523#0 GCGATATACATGGCATTTAGCAGACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGA 252 consensus_5523#1 GCGATATACATGGCACTTAGCAAACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGA 300 *************** ****** ************************************* consensus_5523#0 AGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAAAAGTTGCCCATC 312 consensus_5523#1 AGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAGAAGTTGCCCATC 360 *********************************************** ************ consensus_5523#0 CTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATT 372 consensus_5523#1 CTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATT 420 ************************************************************ consensus_5523#0 CTGTCTGCTGCTTCAACTTGAATGTCCATGGTTTTTCGACCTCCCATGAGTGGCTGAATG 432 consensus_5523#1 CTGCCTGCTGCTTCAACTTGAATGCCCATGGTTTTTCTACCTCCCATGAGCGGCTGA-TG 479 *** ******************** ************ ************ ****** ** consensus_5523#0 TAGGTCTTTGATATTCCTTAGCAAAGTATATTTTATCTTGCTTCATGAATGTATTGTTCA 492 consensus_5523#1 TAGGTCTTTGATATTCCTTAGCAAAGGATATTTTATCTTGCTTTAAGAATGTATTGCTGA 539 ************************** **************** * ********** * * consensus_5523#0 TAGTCACAATGTAGAACTTGTTTGAAGGAGGAACTGTCCAATAATGTCGGTGTAGTTCTT 552 consensus_5523#1 TAGTTACAACGTACAGCTTGCTTGGAGGAGGACCTGTTCAATAATGGCGGTGCCGCTCCT 599 **** **** *** * **** *** ******* **** ******** ***** * ** * consensus_5523#0 GATGTCAGGTGTCACTTTTGTATCCTTCAGCAAAAGCAGACATTGTTGAATTTGCGTGTG 612 consensus_5523#1 GATGCCAGGGGCAACTTTCGTATCGCTAAGGCAAAGAACACATTGATGAATTGCGGTGTG 659 **** **** * ***** ***** * ** **** * ****** ****** ***** consensus_5523#0 CTATTGCCGG-CCTGAGTGCTCTCAAGCAGGTCGATCCAGCCGAAGGCGAACGACGTCGA 671 consensus_5523#1 CTATGGACGGGCCTGGGAGAGG-------------------------------------- 681 **** * *** **** * * consensus_5523#0 ACGCTGAGATCGATGCCTGAGTCAGGCGTGATTCTCAGGGCAGTAACCAAACACACTCTA 731 consensus_5523#1 ------------------------------------------------------------ consensus_5523#0 AATCCAGACTGCGCGTGACTGATTAAAGAGTTAAGCTGGATAGTATTAACCACC 785 consensus_5523#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||