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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 785 fasta sequence
[TACAAGTATATTAGCGGGTCTTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCTGATCATTAGTGCTTAAGGTGCAAAGCTAATTACCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGCTGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAGGCGATATACATGGCATTTAGCAGACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGAAGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAAAAGTTGCCCATCCTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATTCTGTCTGCTGCTTCAACTTGAATGTCCATGGTTTTTCGACCTCCCATGAGTGGCTGAATGTAGGTCTTTGATATTCCTTAGCAAAGTATATTTTATCTTGCTTCATGAATGTATTGTTCATAGTCACAATGTAGAACTTGTTTGAAGGAGGAACTGTCCAATAATGTCGGTGTAGTTCTTGATGTCAGGTGTCACTTTTGTATCCTTCAGCAAAAGCAGACATTGTTGAATTTGCGTGTGCTATTGCCGGCCTGAGTGCTCTCAAGCAGGTCGATCCAGCCGAAGGCGAACGACGTCGAACGCTGAGATCGATGCCTGAGTCAGGCGTGATTCTCAGGGCAGTAACCAAACACACTCTAAATCCAGACTGCGCGTGACTGATTAAAGAGTTAAGCTGGATAGTATTAACCACC]
[+] EMBL CB631211 [TACAAGTATATTAGCGGGTCTTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCTGATCATTAGTGCTTAAGGTGCAAAGCTAATTACCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGCTGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAGGCGATATACATGGCATTTAGCAGACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGAAGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAAAAGTTGCCCATCCTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATTCTGTCTGCTGCTTCAACTTGAATGTCCATGGTTTTTCGACCTCCCATGAGTGGCTGAATGTAGGTCTTTGATATTCCTTAGCAAAGTATATTTTATCTTGCTTCATGAATGTATTGTTCATAGTCACAATGTAGAACTTGTTTGAAGGAGGAACTGTCCAATAATGTCGGTGTAGTTCTTGATGTCAGGTGTCACTTTTGTATCCTTCAGCAAAAGCAGACATTGTTGAATTTGCGTGTGCTATTGCCGGCCTGAGTGCTCTCAAGCAGGTCGATCCAGCCGAAGGCGAACGACGTCGAACGCTGAGATCGATGCCTGAGTCAGGCGTGATTCTCAGGGCAGTAACCAAACACACTCTAAATCCAGACTGCGCGTGACTGATTAAAGAGTTAAGCTGGATAGTA ]
[-] EMBL CF196913 [ AATGTAGGNCTTTGATANNNNNNAGCAAAGTATATTTTATCTTGCTTCATGAATGTATNNNNCATAGTCACAATGTAGAACTTGTTTGAAGGAGGAACTGTCCAATAATGTCGGTGTAGTTCTTGATGTCAGGTGTCACTTTTGTATCCTTCAGCAAAAGCAGACATTGTTGAATTTGCGTGTGCTATTGCCGGCCTGAGTGCTCTCAAGCAGGTCGATCCAGCCGAAGGCGAACGACGTCGAACGCTGAGATCGATGCCTGAGTCAGGCGTGATTCTCAGGGCAGTAACCAAACACACTCTAAATCCAGACTGCGCGTGACTGATTAGAGAGTTAAGCTGGATAGTATTAACCACC]
consensusID : consensus_5523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[TTTTTTTTTTTTAAGGGAAAGGAAGCAGGCATTGATAAATAGATCATATACAAGTATATTAGCGGGTAGTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCCGATCATTAGTGCTTAAGGTGCAAAGCTAATTAGCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGCTGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAGGCGATATACATGGCACTTAGCAAACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGAAGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAGAAGTTGCCCATCCTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATTCTGCCTGCTGCTTCAACTTGAATGCCCATGGTTTTTCTACCTCCCATGAGCGGCTGATGTAGGTCTTTGATATTCCTTAGCAAAGGATATTTTATCTTGCTTTAAGAATGTATTGCTGATAGTTACAACGTACAGCTTGCTTGGAGGAGGACCTGTTCAATAATGGCGGTGCCGCTCCTGATGCCAGGGGCAACTTTCGTATCGCTAAGGCAAAGAACACATTGATGAATTGCGGTGTGCTATGGACGGGCCTGGGAGAGG]
[+] EMBL CA759197 [TTTTTTTTTTTTAAGGGAAAGGAAGCAGGCATTGATAAATAGATCATATACAAGTATATTAGCGGGTAGTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCCGATCATTAGTGCTTAAGGTGCAAAGCTAATTAGCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGCTGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAGGCGATATACATGGCACTTAGCAAACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGAAGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAGAAGTTGCCCATCCTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATTCTGCCTGCTGCTTCAACTTGAATGCCCATGGTTTTTCTACCTCCCATGAGCGGCTGATGTAGGTCTTTGATATTCCTTAGCAAAGGATATTTTATCTTGCTTTAAGAATGTATTGCTGATAGTTACAACGTACAGCTTGCTTGGAGGAGGACCTGTTCAATAATGGCGGTGCCGCTCCTGATGCCAGGGGCAACTTTCGTATCGCTAAGGCAAAGAACACATTGATGAATTGCGGTGTGCTATGGACGGGCCTGGGAGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5523#0 ------------------------------------------------TACAAGTATATT 12
consensus_5523#1 TTTTTTTTTTTTAAGGGAAAGGAAGCAGGCATTGATAAATAGATCATATACAAGTATATT 60
************
consensus_5523#0 AGCGGGTCTTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCTGATCATTAGTG 72
consensus_5523#1 AGCGGGTAGTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCCGATCATTAGTG 120
******* *************************************** ***********
consensus_5523#0 CTTAAGGTGCAAAGCTAATTACCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGC 132
consensus_5523#1 CTTAAGGTGCAAAGCTAATTAGCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGC 180
********************* **************************************
consensus_5523#0 TGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAG 192
consensus_5523#1 TGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAG 240
************************************************************
consensus_5523#0 GCGATATACATGGCATTTAGCAGACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGA 252
consensus_5523#1 GCGATATACATGGCACTTAGCAAACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGA 300
*************** ****** *************************************
consensus_5523#0 AGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAAAAGTTGCCCATC 312
consensus_5523#1 AGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAGAAGTTGCCCATC 360
*********************************************** ************
consensus_5523#0 CTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATT 372
consensus_5523#1 CTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATT 420
************************************************************
consensus_5523#0 CTGTCTGCTGCTTCAACTTGAATGTCCATGGTTTTTCGACCTCCCATGAGTGGCTGAATG 432
consensus_5523#1 CTGCCTGCTGCTTCAACTTGAATGCCCATGGTTTTTCTACCTCCCATGAGCGGCTGA-TG 479
*** ******************** ************ ************ ****** **
consensus_5523#0 TAGGTCTTTGATATTCCTTAGCAAAGTATATTTTATCTTGCTTCATGAATGTATTGTTCA 492
consensus_5523#1 TAGGTCTTTGATATTCCTTAGCAAAGGATATTTTATCTTGCTTTAAGAATGTATTGCTGA 539
************************** **************** * ********** * *
consensus_5523#0 TAGTCACAATGTAGAACTTGTTTGAAGGAGGAACTGTCCAATAATGTCGGTGTAGTTCTT 552
consensus_5523#1 TAGTTACAACGTACAGCTTGCTTGGAGGAGGACCTGTTCAATAATGGCGGTGCCGCTCCT 599
**** **** *** * **** *** ******* **** ******** ***** * ** *
consensus_5523#0 GATGTCAGGTGTCACTTTTGTATCCTTCAGCAAAAGCAGACATTGTTGAATTTGCGTGTG 612
consensus_5523#1 GATGCCAGGGGCAACTTTCGTATCGCTAAGGCAAAGAACACATTGATGAATTGCGGTGTG 659
**** **** * ***** ***** * ** **** * ****** ****** *****
consensus_5523#0 CTATTGCCGG-CCTGAGTGCTCTCAAGCAGGTCGATCCAGCCGAAGGCGAACGACGTCGA 671
consensus_5523#1 CTATGGACGGGCCTGGGAGAGG-------------------------------------- 681
**** * *** **** * *
consensus_5523#0 ACGCTGAGATCGATGCCTGAGTCAGGCGTGATTCTCAGGGCAGTAACCAAACACACTCTA 731
consensus_5523#1 ------------------------------------------------------------
consensus_5523#0 AATCCAGACTGCGCGTGACTGATTAAAGAGTTAAGCTGGATAGTATTAACCACC 785
consensus_5523#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||