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Oryza sativa
cluster # 5523 cluster # 5523       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5523#0 length = 785 sequences # 2  
consensus_5523#1 length = 681 sequences # 1  

consensusID : consensus_5523#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 785
fasta sequence
                              [TACAAGTATATTAGCGGGTCTTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCTGATCATTAGTGCTTAAGGTGCAAAGCTAATTACCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGCTGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAGGCGATATACATGGCATTTAGCAGACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGAAGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAAAAGTTGCCCATCCTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATTCTGTCTGCTGCTTCAACTTGAATGTCCATGGTTTTTCGACCTCCCATGAGTGGCTGAATGTAGGTCTTTGATATTCCTTAGCAAAGTATATTTTATCTTGCTTCATGAATGTATTGTTCATAGTCACAATGTAGAACTTGTTTGAAGGAGGAACTGTCCAATAATGTCGGTGTAGTTCTTGATGTCAGGTGTCACTTTTGTATCCTTCAGCAAAAGCAGACATTGTTGAATTTGCGTGTGCTATTGCCGGCCTGAGTGCTCTCAAGCAGGTCGATCCAGCCGAAGGCGAACGACGTCGAACGCTGAGATCGATGCCTGAGTCAGGCGTGATTCTCAGGGCAGTAACCAAACACACTCTAAATCCAGACTGCGCGTGACTGATTAAAGAGTTAAGCTGGATAGTATTAACCACC]

[+] EMBL CB631211             [TACAAGTATATTAGCGGGTCTTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCTGATCATTAGTGCTTAAGGTGCAAAGCTAATTACCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGCTGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAGGCGATATACATGGCATTTAGCAGACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGAAGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAAAAGTTGCCCATCCTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATTCTGTCTGCTGCTTCAACTTGAATGTCCATGGTTTTTCGACCTCCCATGAGTGGCTGAATGTAGGTCTTTGATATTCCTTAGCAAAGTATATTTTATCTTGCTTCATGAATGTATTGTTCATAGTCACAATGTAGAACTTGTTTGAAGGAGGAACTGTCCAATAATGTCGGTGTAGTTCTTGATGTCAGGTGTCACTTTTGTATCCTTCAGCAAAAGCAGACATTGTTGAATTTGCGTGTGCTATTGCCGGCCTGAGTGCTCTCAAGCAGGTCGATCCAGCCGAAGGCGAACGACGTCGAACGCTGAGATCGATGCCTGAGTCAGGCGTGATTCTCAGGGCAGTAACCAAACACACTCTAAATCCAGACTGCGCGTGACTGATTAAAGAGTTAAGCTGGATAGTA         ]
[-] EMBL CF196913             [                                                                                                                                                                                                                                                                                                                                                                                                                                            AATGTAGGNCTTTGATANNNNNNAGCAAAGTATATTTTATCTTGCTTCATGAATGTATNNNNCATAGTCACAATGTAGAACTTGTTTGAAGGAGGAACTGTCCAATAATGTCGGTGTAGTTCTTGATGTCAGGTGTCACTTTTGTATCCTTCAGCAAAAGCAGACATTGTTGAATTTGCGTGTGCTATTGCCGGCCTGAGTGCTCTCAAGCAGGTCGATCCAGCCGAAGGCGAACGACGTCGAACGCTGAGATCGATGCCTGAGTCAGGCGTGATTCTCAGGGCAGTAACCAAACACACTCTAAATCCAGACTGCGCGTGACTGATTAGAGAGTTAAGCTGGATAGTATTAACCACC]


>consensus_5523#0 TACAAGTATATTAGCGGGTCTTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGC TGATCATTAGTGCTTAAGGTGCAAAGCTAATTACCATAGCATAACGGTGGTAGAGGAGGC TTGCAGTTTTGCTGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTC ACTATAGCATAGGCGATATACATGGCATTTAGCAGACATCTATTGTCGTTTGGAGTTGAG GTGCCTTGTGGAAGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAA AAGTTGCCCATCCTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGG GTGACTGAAATTCTGTCTGCTGCTTCAACTTGAATGTCCATGGTTTTTCGACCTCCCATG AGTGGCTGAATGTAGGTCTTTGATATTCCTTAGCAAAGTATATTTTATCTTGCTTCATGA ATGTATTGTTCATAGTCACAATGTAGAACTTGTTTGAAGGAGGAACTGTCCAATAATGTC GGTGTAGTTCTTGATGTCAGGTGTCACTTTTGTATCCTTCAGCAAAAGCAGACATTGTTG AATTTGCGTGTGCTATTGCCGGCCTGAGTGCTCTCAAGCAGGTCGATCCAGCCGAAGGCG AACGACGTCGAACGCTGAGATCGATGCCTGAGTCAGGCGTGATTCTCAGGGCAGTAACCA AACACACTCTAAATCCAGACTGCGCGTGACTGATTAAAGAGTTAAGCTGGATAGTATTAA CCACC



consensusID : consensus_5523#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence
                              [TTTTTTTTTTTTAAGGGAAAGGAAGCAGGCATTGATAAATAGATCATATACAAGTATATTAGCGGGTAGTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCCGATCATTAGTGCTTAAGGTGCAAAGCTAATTAGCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGCTGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAGGCGATATACATGGCACTTAGCAAACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGAAGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAGAAGTTGCCCATCCTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATTCTGCCTGCTGCTTCAACTTGAATGCCCATGGTTTTTCTACCTCCCATGAGCGGCTGATGTAGGTCTTTGATATTCCTTAGCAAAGGATATTTTATCTTGCTTTAAGAATGTATTGCTGATAGTTACAACGTACAGCTTGCTTGGAGGAGGACCTGTTCAATAATGGCGGTGCCGCTCCTGATGCCAGGGGCAACTTTCGTATCGCTAAGGCAAAGAACACATTGATGAATTGCGGTGTGCTATGGACGGGCCTGGGAGAGG]

[+] EMBL CA759197             [TTTTTTTTTTTTAAGGGAAAGGAAGCAGGCATTGATAAATAGATCATATACAAGTATATTAGCGGGTAGTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCCGATCATTAGTGCTTAAGGTGCAAAGCTAATTAGCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGCTGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAGGCGATATACATGGCACTTAGCAAACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGAAGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAGAAGTTGCCCATCCTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATTCTGCCTGCTGCTTCAACTTGAATGCCCATGGTTTTTCTACCTCCCATGAGCGGCTGATGTAGGTCTTTGATATTCCTTAGCAAAGGATATTTTATCTTGCTTTAAGAATGTATTGCTGATAGTTACAACGTACAGCTTGCTTGGAGGAGGACCTGTTCAATAATGGCGGTGCCGCTCCTGATGCCAGGGGCAACTTTCGTATCGCTAAGGCAAAGAACACATTGATGAATTGCGGTGTGCTATGGACGGGCCTGGGAGAGG]


>consensus_5523#1 TTTTTTTTTTTTAAGGGAAAGGAAGCAGGCATTGATAAATAGATCATATACAAGTATATT AGCGGGTAGTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCCGATCATTAGTG CTTAAGGTGCAAAGCTAATTAGCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGC TGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAG GCGATATACATGGCACTTAGCAAACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGA AGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAGAAGTTGCCCATC CTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATT CTGCCTGCTGCTTCAACTTGAATGCCCATGGTTTTTCTACCTCCCATGAGCGGCTGATGT AGGTCTTTGATATTCCTTAGCAAAGGATATTTTATCTTGCTTTAAGAATGTATTGCTGAT AGTTACAACGTACAGCTTGCTTGGAGGAGGACCTGTTCAATAATGGCGGTGCCGCTCCTG ATGCCAGGGGCAACTTTCGTATCGCTAAGGCAAAGAACACATTGATGAATTGCGGTGTGC TATGGACGGGCCTGGGAGAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5523#0      ------------------------------------------------TACAAGTATATT 12
consensus_5523#1      TTTTTTTTTTTTAAGGGAAAGGAAGCAGGCATTGATAAATAGATCATATACAAGTATATT 60
                                                                      ************

consensus_5523#0      AGCGGGTCTTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCTGATCATTAGTG 72
consensus_5523#1      AGCGGGTAGTAGTAGGTGGCATTGCATATTTACAATAGAGTTGAGTGCCGATCATTAGTG 120
                      *******  *************************************** ***********

consensus_5523#0      CTTAAGGTGCAAAGCTAATTACCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGC 132
consensus_5523#1      CTTAAGGTGCAAAGCTAATTAGCATAGCATAACGGTGGTAGAGGAGGCTTGCAGTTTTGC 180
                      ********************* **************************************

consensus_5523#0      TGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAG 192
consensus_5523#1      TGCACTAAAATGAATGGGATAATTTAGTGCTAACAAAAGGACGATTTCACTATAGCATAG 240
                      ************************************************************

consensus_5523#0      GCGATATACATGGCATTTAGCAGACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGA 252
consensus_5523#1      GCGATATACATGGCACTTAGCAAACATCTATTGTCGTTTGGAGTTGAGGTGCCTTGTGGA 300
                      *************** ****** *************************************

consensus_5523#0      AGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAAAAGTTGCCCATC 312
consensus_5523#1      AGTGAAAGATGTAAACGGACCGAAGATGTATGCCATTGTTCGCTGCAGAAGTTGCCCATC 360
                      *********************************************** ************

consensus_5523#0      CTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATT 372
consensus_5523#1      CTTTTTTTTAAGTTGCAACGACCATGTGTTGAAACATGTAGAGTCAGGGTGACTGAAATT 420
                      ************************************************************

consensus_5523#0      CTGTCTGCTGCTTCAACTTGAATGTCCATGGTTTTTCGACCTCCCATGAGTGGCTGAATG 432
consensus_5523#1      CTGCCTGCTGCTTCAACTTGAATGCCCATGGTTTTTCTACCTCCCATGAGCGGCTGA-TG 479
                      *** ******************** ************ ************ ****** **

consensus_5523#0      TAGGTCTTTGATATTCCTTAGCAAAGTATATTTTATCTTGCTTCATGAATGTATTGTTCA 492
consensus_5523#1      TAGGTCTTTGATATTCCTTAGCAAAGGATATTTTATCTTGCTTTAAGAATGTATTGCTGA 539
                      ************************** **************** * ********** * *

consensus_5523#0      TAGTCACAATGTAGAACTTGTTTGAAGGAGGAACTGTCCAATAATGTCGGTGTAGTTCTT 552
consensus_5523#1      TAGTTACAACGTACAGCTTGCTTGGAGGAGGACCTGTTCAATAATGGCGGTGCCGCTCCT 599
                      **** **** *** * **** *** ******* **** ******** *****  * ** *

consensus_5523#0      GATGTCAGGTGTCACTTTTGTATCCTTCAGCAAAAGCAGACATTGTTGAATTTGCGTGTG 612
consensus_5523#1      GATGCCAGGGGCAACTTTCGTATCGCTAAGGCAAAGAACACATTGATGAATTGCGGTGTG 659
                      **** **** *  ***** *****  * **  **** * ****** ******   *****

consensus_5523#0      CTATTGCCGG-CCTGAGTGCTCTCAAGCAGGTCGATCCAGCCGAAGGCGAACGACGTCGA 671
consensus_5523#1      CTATGGACGGGCCTGGGAGAGG-------------------------------------- 681
                      **** * *** **** * *                                         

consensus_5523#0      ACGCTGAGATCGATGCCTGAGTCAGGCGTGATTCTCAGGGCAGTAACCAAACACACTCTA 731
consensus_5523#1      ------------------------------------------------------------
                                                                                  

consensus_5523#0      AATCCAGACTGCGCGTGACTGATTAAAGAGTTAAGCTGGATAGTATTAACCACC 785
consensus_5523#1      ------------------------------------------------------
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)