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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1685 fasta sequence
[TTTTGTTGATGTTGAGAGACCAGAAGACCCACTTTTCACAGGTTCTCCAGTACAATGGCAAAATGGAGCCAACGCTAAAGTTGCAATATTTGAAAATGGGAGTCAAATCACACAGGGTGGTCTTTCTAAACTACAAATCGAGATTTTACCAGTCCATGATGATTTCTTCACTGAGCGAGGACCAGCAAATTTCACCAAAGAGGAATTCAACAAGCAGATATACATGTGCAAAGGGAAAGAGTCAGTATTGAAAACTGTCAATTTAACAAATGGTGAGGCCAATCTTGGTTCCTTCTTCTTTACAGAGAGTTCCCATGGGAAAAGGTTAAGATTGGCAGCAAGAGTAAAATATCAGGATCTTGCAGTCAGGGTTCAGGAAGCAACCAGCTATTCTTTTGTTGTCAAAGACCGTCGTAGTAAATTAAATAAAAAGAGCAATTCTCCATCTAAGGAAGAAGGGATTCATTGTTTGAAGAAAATTTCCCTAAAAGGAAAACGTTGCAATGACCTTGCGGGCAAATATATTACTAAGGTGAAGCATTTGATGCGCTGTTACCACAG-AGATCCAGCTGGTCTCCAAAAGCTTACTGGCATGAAGAATGAAGATTGGAATACCATGATTAGTCATGCAACCACGTCTGATCCTGGGGATGAGATCCATTCTTACAGAGTTGAGAAAAATACTATAATCTTCTTCAATGATTTCTTTGCTCTAGTCGGTATGTCGGTTGATGGCTCCTATGCTCCTTACCACGCCAA-CAATCTTAATCAGCTACAGCAGCGTAAAATGAACAAGTGGAAGGAGTCTGCGTATCAGAAATTTGAGGAACTGGAGAAGTTGGGGTGTCTTATTCCTGATCATGTCATGATCAATGGCCAACCTGTTCCCGTGTCTCCAAAAAATGATGCCAGTCATTCCATACAAGCCAACCCAACATGCTTTAATCACCAGATTGCACTTGAAGGTCAGGGACATCGATTTCAACAGCAGAATGGATTTTCAGCAGTACACGTATTTACTCCATACAATGTTGCTGGAACTTCCACACAACTAAAAGAGCCGTTGCAACAGTATCCTTATGAACAAAAATCTGGTCGGGAGGGTCCTTCTATGCAGCATAATGGAACTTCTTACTCTCTGACTGAGGAAAACATCTTGAACGGTCTAGGCTCTGGCTTAGTACAATCAACTATCCTATCTCAAAATACTGCAGTAGTCCCAGGTGCAGATCCACGGCACAGTGGATATGCCAGCACCTCTACAGCTGACGCTGCTGGTACTTCTTGTCCTGTAACAGATGGAGTTGGTCCATGGGACTATCCGATTTTCAGTGATCTGTATCCAAATGTAGAACCGTCAGGACTAATCTATGGGCATGTGGTGGAGGCAGACCAGGCCTTTCTCCCAGATAGCCACGAACTGGCAAATGCCGACAACCAATTTACTGGAGGTAATGATGATAGTGCTCCATTTGACTGAAATCACCGCAACAAGTTATTGTCTACTCTCAACCATACTAAAGTGTTCAGTACTTCCAGTGTGATTATAAGTGTGTAGTAGTTCGTAAATATAGTAGGGACATATTATGTCAGCTATTCTTTAATTTGTTCCGCTCACGTTAAATTTGCTGCCTGCACATTTGGCATAGTTTGTTTGTACTACTGAATACTGAGATCAAATATTG]
[+] EMBL AK110772 [TTTTGTTGATGTTGAGAGACCAGAAGACCCACTTTTCACAGGTTCTCCAGTACAATGGCAAAATGGAGCCAACGCTAAAGTTGCAATATTTGAAAATGGGAGTCAAATCACACAGGGTGGTCTTTCTAAACTACAAATCGAGATTTTACCAGTCCATGATGATTTCTTCACTGAGCGAGGACCAGCAAATTTCACCAAAGAGGAATTCAACAAGCAGATATACATGTGCAAAGGGAAAGAGTCAGTATTGAAAACTGTCAATTTAACAAATGGTGAGGCCAATCTTGGTTCCTTCTTCTTTACAGAGAGTTCCCATGGGAAAAGGTTAAGATTGGCAGCAAGAGTAAAATATCAGGATCTTGCAGTCAGGGTTCAGGAAGCAACCAGCTATTCTTTTGTTGTCAAAGACCGTCGTAGTAAATTAAATAAAAAGAGCAATTCTCCATCTAAGGAAGAAGGGATTCATTGTTTGAAGAAAATTTCCCTAAAAGGAAAACGTTGCAATGACCTTGCGGGCAAATATATTACTAAGGTGAAGCATTTGATGCGCTGTTACCACAG AGATCCAGCTGGTCTCCAAAAGCTTACTGGCATGAAGAATGAAGATTGGAATACCATGATTAGTCATGCAACCACGTCTGATCCTGGGGATGAGATCCATTCTTACAGAGTTGAGAAAAATACTATAATCTTCTTCAATGATTTCTTTGCTCTAGTCGGTATGTCGGTTGATGGCTCCTATGCTCCTTACCACGCCAA CAATCTTAATCAGCTACAGCAGCGTAAAATGAACAAGTGGAAGGAGTCTGCGTATCAGAAATTTGAGGAACTGGAGAAGTTGGGGTGTCTTATTCCTGATCATGTCATGATCAATGGCCAACCTGTTCCCGTGTCTCCAAAAAATGATGCCAGTCATTCCATACAAGCCAACCCAACATGCTTTAATCACCAGATTGCACTTGAAGGTCAGGGACATCGATTTCAACAGCAGAATGGATTTTCAGCAGTACACGTATTTACTCCATACAATGTTGCTGGAACTTCCACACAACTAAAAGAGCCGTTGCAACAGTATCCTTATGAACAAAAATCTGGTCGGGAGGGTCCTTCTATGCAGCATAATGGAACTTCTTACTCTCTGACTGAGGAAAACATCTTGAACGGTCTAGGCTCTGGCTTAGTACAATCAACTATCCTATCTCAAAATACTGCAGTAGTCCCAGGTGCAGATCCACGGCACAGTGGATATGCCAGCACCTCTACAGCTGACGCTGCTGGTACTTCTTGTCCTGTAACAGATGGAGTTGGTCCATGGGACTATCCGATTTTCAGTGATCTGTATCCAAATGTAGAACCGTCAGGACTAATCTATGGGCATGTGGTGGAGGCAGACCAGGCCTTTCTCCCAGATAGCCACGAACTGGCAAATGCCGACAACCAATTTACTGGAGGTAATGATGATAGTGCTCCATTTGACTGAAATCACCGCAACAAGTTATTGTCTACTCTCAACCATACTAAAGTGTTCAGTACTTCCAGTGTGATTATAAGTGTGTAGTAGTTCGTAAATATAGTAGGGACATATTATGTCAGCTATTCTTTAATTTGTTCCGCTCACGTTAAATTTGCTGCCTGCACATTTGGCATAGTTTGTTTGTACTACTGAATACTGAGATCAAATATTG]
[+] EMBL CA764851 [ CAAGCAGATATACATGTGCAAAGGGAAAGAGTCCGTATTGAAAACTGTCAATTTAACAAATGGTGAGGCCAATCTTGGTTCCTTCTTCTTTACAGAGAGTTCCCATGGGAAAAGGTTAAGATTGGCAGCAAGAGTAAAATATCAGGATCTTGCAGTCAGGGTTCAGGAAGCAACCAGTTATTCTTTTGTTGTCAAAGACCGTCGTAGTAAATTAAATAAAAAGAGCAATTCTCCATCTAAGGAAGAAGGGATTCATTGTTTGAAGAAAATTTCCCTAAAAGGAAAACGTTGCAATGACCTTGCGGGCAAATATATTACTAAGGTGAAGCATTTGATGCGCTGTTACCACAGNAGATCCAGCTGGTCTCCAAAAGCTTACTGGCATGAAGAATGAAGATTGGAATACCATGATTAGTCATGCAACCACGTCTGATCCTGGGGATGAGATCCATTCTTACAGAGTTGAGANAAATACTATAATCTTCTTCAATGATTTCTTTGCTCTAGTCGGTATGTCGGTTGATGGCTCCTATGCTCCTTACCACGCCAACCAATCTTAATCAGCTACAGCAGCGTAAAATGAACAAGTGGAAGGAGTCTGCGTATCAAAAATTTtga ]
consensusID : consensus_5531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[GCGAGTTCGCGGGTCTTTTTCGGGAGTTGAGATGGCGGGGCGCCCCGGTAGCGGTATCCGCGAAATTCTGGTCGGTAGGGGCCTTCTATCCACGCTAATGGAACGTCTGGCTCTTCGAGTAGGGAAGCGATCGTGAACGGTTTAGGCTCTGGGTTAGTGCAATCACCTATCCTATCTCAAAATACTCCAGTAGTCCCAGGTGCAGATCCACGGCACAGTGGATATGCCAGCACCTCTACAACTGGCTGTGCTGGTACTTCTTGTCCTGTAACAGATGGAGTTGGTCCATGGGACTATCCGATTTTCAGTGATCTGTATCCAAATGTAGAACCGTCAGGACTAATCTATGGGCATGTGGTGGAGGCAGACCAGGCCTTTCTCCCAGATAGCCACGAACTGGCAAATGCCGACAACCAATTTACTGGAGGTAATGATGATAGTGCTCCATTTGACTGAAATCACCGCAACAAGTTATTGTCTACTCTCAACCATACTAAAGTGTTCAGTACTTCCGGTGTGATTATAAGTGTGTAGTAGTTCGTAAATATAGTAGGGACATATTATGTCAGCTATTCTTTAATTTGTTCCGCTCACGTTAAATTTTCTGCCTGCACATTTGGCATAGTTTGTTTGTACTACTGAATACTGAGATCAAATATTGATATTGATGCACTAAAAAAAA]
[-] EMBL CA759187 [GCGAGTTCGCGGGTCTTTTTCGGGAGTTGAGATGGCGGGGCGCCCCGGTAGCGGTATCCGCGAAATTCTGGTCGGTAGGGGCCTTCTATCCACGCTAATGGAACGTCTGGCTCTTCGAGTAGGGAAGCGATCGTGAACGGTTTAGGCTCTGGGTTAGTGCAATCACCTATCCTATCTCAAAATACTCCAGTAGTCCCAGGTGCAGATCCACGGCACAGTGGATATGCCAGCACCTCTACAACTGGCTGTGCTGGTACTTCTTGTCCTGTAACAGATGGAGTTGGTCCATGGGACTATCCGATTTTCAGTGATCTGTATCCAAATGTAGAACCGTCAGGACTAATCTATGGGCATGTGGTGGAGGCAGACCAGGCCTTTCTCCCAGATAGCCACGAACTGGCAAATGCCGACAACCAATTTACTGGAGGTAATGATGATAGTGCTCCATTTGACTGAAATCACCGCAACAAGTTATTGTCTACTCTCAACCATACTAAAGTGTTCAGTACTTCCGGTGTGATTATAAGTGTGTAGTAGTTCGTAAATATAGTAGGGACATATTATGTCAGCTATTCTTTAATTTGTTCCGCTCACGTTAAATTTTCTGCCTGCACATTTGGCATAGTTTGTTTGTACTACTGAATACTGAGATCAAATATTGATATTGATGCACTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5531#0 TTTTGTTGATGTTGAGAGACCAGAAGACCCACTTTTCACAGGTTCTCCAGTACAATGGCA 60
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 AAATGGAGCCAACGCTAAAGTTGCAATATTTGAAAATGGGAGTCAAATCACACAGGGTGG 120
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 TCTTTCTAAACTACAAATCGAGATTTTACCAGTCCATGATGATTTCTTCACTGAGCGAGG 180
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 ACCAGCAAATTTCACCAAAGAGGAATTCAACAAGCAGATATACATGTGCAAAGGGAAAGA 240
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 GTCAGTATTGAAAACTGTCAATTTAACAAATGGTGAGGCCAATCTTGGTTCCTTCTTCTT 300
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 TACAGAGAGTTCCCATGGGAAAAGGTTAAGATTGGCAGCAAGAGTAAAATATCAGGATCT 360
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 TGCAGTCAGGGTTCAGGAAGCAACCAGCTATTCTTTTGTTGTCAAAGACCGTCGTAGTAA 420
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 ATTAAATAAAAAGAGCAATTCTCCATCTAAGGAAGAAGGGATTCATTGTTTGAAGAAAAT 480
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 TTCCCTAAAAGGAAAACGTTGCAATGACCTTGCGGGCAAATATATTACTAAGGTGAAGCA 540
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 TTTGATGCGCTGTTACCACAGAGATCCAGCTGGTCTCCAAAAGCTTACTGGCATGAAGAA 600
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 TGAAGATTGGAATACCATGATTAGTCATGCAACCACGTCTGATCCTGGGGATGAGATCCA 660
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 TTCTTACAGAGTTGAGAAAAATACTATAATCTTCTTCAATGATTTCTTTGCTCTAGTCGG 720
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 TATGTCGGTTGATGGCTCCTATGCTCCTTACCACGCCAACAATCTTAATCAGCTACAGCA 780
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 GCGTAAAATGAACAAGTGGAAGGAGTCTGCGTATCAGAAATTTGAGGAACTGGAGAAGTT 840
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 GGGGTGTCTTATTCCTGATCATGTCATGATCAATGGCCAACCTGTTCCCGTGTCTCCAAA 900
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 AAATGATGCCAGTCATTCCATACAAGCCAACCCAACATGCTTTAATCACCAGATTGCACT 960
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 TGAAGGTCAGGGACATCGATTTCAACAGCAGAATGGATTTTCAGCAGTACACGTATTTAC 1020
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 TCCATACAATGTTGCTGGAACTTCCACACAACTAAAAGAGCCGT-TGCAACAGTATCCTT 1079
consensus_5531#1 -----GCGAGTTCGCGGGTCTTTTTCGGGAGTTGAGATGGCGGGGCGCCCCGGTAGCGGT 55
* * * ** ** ** * * * * ** * ** * *** * *
consensus_5531#0 ATGAACAAAAATCTGGTCGGGAGGGTCCTTCTATGCAGCATAATGGAACTTCTTACTCTC 1139
consensus_5531#1 ATCCGCGAAATTCTGGTCGGTAGGGGCCTTCTATCCACGCTAATGGAACGTCTGGCTCTT 115
** * *** ********* **** ******** ** ********* *** ****
consensus_5531#0 TGACTGAGGAAAACATCTTGAACGGTCTAGGCTCTGGCTTAGTACAATCAACTATCCTAT 1199
consensus_5531#1 CGAGTAGGGAAGCGATCGTGAACGGTTTAGGCTCTGGGTTAGTGCAATCACCTATCCTAT 175
** * **** *** ******** ********** ***** ****** *********
consensus_5531#0 CTCAAAATACTGCAGTAGTCCCAGGTGCAGATCCACGGCACAGTGGATATGCCAGCACCT 1259
consensus_5531#1 CTCAAAATACTCCAGTAGTCCCAGGTGCAGATCCACGGCACAGTGGATATGCCAGCACCT 235
*********** ************************************************
consensus_5531#0 CTACAGCTGACGCTGCTGGTACTTCTTGTCCTGTAACAGATGGAGTTGGTCCATGGGACT 1319
consensus_5531#1 CTACAACTGGCTGTGCTGGTACTTCTTGTCCTGTAACAGATGGAGTTGGTCCATGGGACT 295
***** *** * ***********************************************
consensus_5531#0 ATCCGATTTTCAGTGATCTGTATCCAAATGTAGAACCGTCAGGACTAATCTATGGGCATG 1379
consensus_5531#1 ATCCGATTTTCAGTGATCTGTATCCAAATGTAGAACCGTCAGGACTAATCTATGGGCATG 355
************************************************************
consensus_5531#0 TGGTGGAGGCAGACCAGGCCTTTCTCCCAGATAGCCACGAACTGGCAAATGCCGACAACC 1439
consensus_5531#1 TGGTGGAGGCAGACCAGGCCTTTCTCCCAGATAGCCACGAACTGGCAAATGCCGACAACC 415
************************************************************
consensus_5531#0 AATTTACTGGAGGTAATGATGATAGTGCTCCATTTGACTGAAATCACCGCAACAAGTTAT 1499
consensus_5531#1 AATTTACTGGAGGTAATGATGATAGTGCTCCATTTGACTGAAATCACCGCAACAAGTTAT 475
************************************************************
consensus_5531#0 TGTCTACTCTCAACCATACTAAAGTGTTCAGTACTTCCAGTGTGATTATAAGTGTGTAGT 1559
consensus_5531#1 TGTCTACTCTCAACCATACTAAAGTGTTCAGTACTTCCGGTGTGATTATAAGTGTGTAGT 535
************************************** *********************
consensus_5531#0 AGTTCGTAAATATAGTAGGGACATATTATGTCAGCTATTCTTTAATTTGTTCCGCTCACG 1619
consensus_5531#1 AGTTCGTAAATATAGTAGGGACATATTATGTCAGCTATTCTTTAATTTGTTCCGCTCACG 595
************************************************************
consensus_5531#0 TTAAATTTGCTGCCTGCACATTTGGCATAGTTTGTTTGTACTACTGAATACTGAGATCAA 1679
consensus_5531#1 TTAAATTTTCTGCCTGCACATTTGGCATAGTTTGTTTGTACTACTGAATACTGAGATCAA 655
******** ***************************************************
consensus_5531#0 ATATTG--------------------- 1685
consensus_5531#1 ATATTGATATTGATGCACTAAAAAAAA 682
******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||