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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5535 cluster # 5535       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5535#0 length = 983 sequences # 3  

consensusID : consensus_5535#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 983
fasta sequence
                              [TACACAAGCAACGCCACAAAAATCGATGGTCATGACGACGACCAACGGCGGCGGCGTAGATCCTCCACAATGGCCGGAGGAGGAGGAAGACGAAGATGCAGCCGCGGGGAGCAGCTGCCGCGTCACGGCGGCGAACGGGCACCACCACCACCACCAGCAGCTCGTCGTCTCCGGCGAGCTGGGAGGAGGAGGCGGCGGCGGTGGCGGCGGCCGCGAGAAGGAGGACGACGAGCTGAAGCGGAAGTGGGCGGCGATCGAGAGGCTGCCCACCGCCGACCGGCTGCGGTTGTCTCTCCTCTCCAGTACTCGCGGCGGCGGTAGCAGCGGCGATGTGAGCGAGGGAGGCGGAGGAGGAGCAGCGTCGTCGGAGTTGGAGGTGGTGGACGTGCGGTGGCTGGGTGCGGCGGAGCGGCGAGCGGTGGTGCAACGGCTGGTCGCCGACGTCAAACACGACCATGTCCGGATGCTCAGGAAGCAGCGGGAGAGGATGGAGAGGTACGTAACACGATCGAACACCTCTTTCTCTTAAGAAAAAAAAGATGTAAATTATATAAAAATTTTCATTAATAAATAGTAGTCAAATTTTGCATATTTTGTTTAAAAAATAGTAGTCAAAATTTCATTTTTCAACACGTAATTTATATTACACATTAAATTTCATATCTATCATTGTAAATTATATAAGTTTAATTTAATTTGCACTATGAATTCTAAATCTTATCCTATATAATCCTAACTTTTACTAGTGGGTATTCAACATTTGCACGTAGGATGCCCTGCAGCTATACTAGTGGCAGACATAGGATGGTTGCGTCATCAATAAAAATATAGAAAATTCTAAATTACAAAAAGTGATAAACTGTAGAAAAATATAGCAGCAAAATATTTATCTTTTTAGTTTGGTATCATTTTTGAACATATAATATAATATAATATAATATATGTGTTTTTTAAAGAAATATAATTTGCTTACGAAAGAAAAA]

[+] EMBL AK061457             [TACACAAGCAACGCCACAAAAATCGATGGTCATGACGACGACCAACGGCGGCGGCGTAGATCCTCCACAATGGCCGGAGGAGGAGGAAGACGAAGATGCAGCCGCGGGGAGCAGCTGCCGCGTCACGGCGGCGAACGGGCACCACCACCACCACCAGCAGCTCGTCGTCTCCGGCGAGCTGGGAGGAGGAGGCGGCGGCGGTGGCGGCGGCCGCGAGAAGGAGGACGACGAGCTGAAGCGGAAGTGGGCGGCGATCGAGAGGCTGCCCACCGCCGACCGGCTGCGGTTGTCTCTCCTCTCCAGTACTCGCGGCGGCGGTAGCAGCGGCGATGTGAGCGAGGGAGGCGGAGGAGGAGCAGCGTCGTCGGAGTTGGAGGTGGTGGACGTGCGGTGGCTGGGTGCGGCGGAGCGGCGAGCGGTGGTGCAACGGCTGGTCGCCGACGTCAAACACGACCATGTCCGGATGCTCAGGAAGCAGCGGGAGAGGATGGAGAGGTACGTAACACGATCGAACACCTCTTTCTCTTAAGAAAAAAAAGATGTAAATTATATAAAAATTTTCATTAATAAATAGTAGTCAAATTTTGCATATTTTGTTTAAAAAATAGTAGTCAAAATTTCATTTTTCAACACGTAATTTATATTACACATTAAATTTCATATCTATCATTGTAAATTATATAAGTTTAATTTAATTTGCACTATGAATTCTAAATCTTATCCTATATAATCCTAACTTTTACTAGTGGGTATTCAACATTTGCACGTAGGATGCCCTGCAGCTATACTAGTGGCAGACATAGGATGGTTGCGTCATCAATAAAAATATAGAAAATTCTAAATTACAAAAAGTGATAAACTGTAGAAAAATATAGCAGCAAAATATTTATCTTTTTAGTTTGGTATCATTTTTGAACATATAATATAATATAATATAATATATGTGTTTTTTAAAGAAATATAA                   ]
[+] EMBL AU174745             [                                                                                                                                                                                                                                                                                                                                                                  AGCAGCGTCGTCGGAGTTGGAGGTGGTGGACGTGCGGTGGCTGGGTGCGGCGGAGCGGCGAGCGGTGGTGCAACGGCTGGTCGCCGACGTCAAACACGACCATGTCCGGATGCTCAGGAAGCAGCGGGAGAGGATGGAGAGGTACGTAACACGATCGAACACCTCTTTCTCTTAAGAAAAAAAAGATGTAAATTATATAAAAATTTTCATTAATAAATAGTAGTCAAATTTTGCATATTTTGTTTAAAAAATAGTAGTCAAAATTTCATTTTTCAACACGTAATTTATATTACACATTAAATTTCATATCTATCATTGTAAATTATATAAGTTTAATTTAATTTGCACTATGAATTCTAAATCTTATCCTATATAATCCTAACTTTTACTAGTGGGTATTCAACA                                                                                                                                                                                                                                ]
[+] EMBL AU174744             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AAGAAAAAAAAGATGTAAATTATATAAAAATTTTCATTAATAAATAGTAGTCAAATTTTGCATATTTTGTTTAAAAAATAGTAGTCAAAATTTCATTTTTCAACACGTAATTTATATTACNCATTAAATTTCATATCTATCATTGTAAATTATATAAGTTTAATTTAATTTGCNCTATGAATTCTAAATCTTATCCTATATAATCCTAACTTTTACTAGTGGGTATTCAACATTTGCACGTAGGATGCCCTGCAGCTATACTAGTGGCAGACATAGGATGGTTGCGTCATCAATAAAAATATAGAAAATTNTNAATTACAAAAAGTGATAAACTGTAGAAAAATATAGCAGCAAAATATTTATCTTTTTAGTTTGGTATCATTTTTGAACATATAATATAATATAATATAATATATGTGTTTTTTAAAGAAATATAATTTGCTTACGAAAGAAAAA]


>consensus_5535#0 TACACAAGCAACGCCACAAAAATCGATGGTCATGACGACGACCAACGGCGGCGGCGTAGA TCCTCCACAATGGCCGGAGGAGGAGGAAGACGAAGATGCAGCCGCGGGGAGCAGCTGCCG CGTCACGGCGGCGAACGGGCACCACCACCACCACCAGCAGCTCGTCGTCTCCGGCGAGCT GGGAGGAGGAGGCGGCGGCGGTGGCGGCGGCCGCGAGAAGGAGGACGACGAGCTGAAGCG GAAGTGGGCGGCGATCGAGAGGCTGCCCACCGCCGACCGGCTGCGGTTGTCTCTCCTCTC CAGTACTCGCGGCGGCGGTAGCAGCGGCGATGTGAGCGAGGGAGGCGGAGGAGGAGCAGC GTCGTCGGAGTTGGAGGTGGTGGACGTGCGGTGGCTGGGTGCGGCGGAGCGGCGAGCGGT GGTGCAACGGCTGGTCGCCGACGTCAAACACGACCATGTCCGGATGCTCAGGAAGCAGCG GGAGAGGATGGAGAGGTACGTAACACGATCGAACACCTCTTTCTCTTAAGAAAAAAAAGA TGTAAATTATATAAAAATTTTCATTAATAAATAGTAGTCAAATTTTGCATATTTTGTTTA AAAAATAGTAGTCAAAATTTCATTTTTCAACACGTAATTTATATTACACATTAAATTTCA TATCTATCATTGTAAATTATATAAGTTTAATTTAATTTGCACTATGAATTCTAAATCTTA TCCTATATAATCCTAACTTTTACTAGTGGGTATTCAACATTTGCACGTAGGATGCCCTGC AGCTATACTAGTGGCAGACATAGGATGGTTGCGTCATCAATAAAAATATAGAAAATTCTA AATTACAAAAAGTGATAAACTGTAGAAAAATATAGCAGCAAAATATTTATCTTTTTAGTT TGGTATCATTTTTGAACATATAATATAATATAATATAATATATGTGTTTTTTAAAGAAAT ATAATTTGCTTACGAAAGAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)