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Oryza sativa
cluster # 554 cluster # 554       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_554#0 length = 692 sequences # 1  
consensus_554#1 length = 691 sequences # 1  

consensusID : consensus_554#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTATGAACAACCTCGAGTATAATTGGCTACCCCGTTCCGGGCGCGAATCGCCACCTAGAAACAAAAAAGACATCAATACTCTCTTTTTTCTTCGGAGCTGCTTGCAAACACGCCCCAGTCTCTCGACCACGACTAGAATTTTCTTTCCTAGATATGAGGTTCGTCTGTAAGGGAGTCCCTTCCGCATCGGCACGAGGAGAAATGTGTCGAAGGCCGCCATCCAATCCGCGCTATCGGGAGCTCGTGAAACGTGCGAAGGGCAGGGTGAGCAGGAGTAGTGCGAGCAGGCGCTTAAAAGCACTTGCGGGGGACGATCGAAGGACCGCTCTCGTCGTACTCCTGCTTCGAGATCCACATCTGCTGGAAGGTCGACAGGGAAGCCAGAATGGAACCACCGATCCAGACGGAGTACTTCCGCTCGGGCGGGGCAATGATCTTGACCTTCATCGACCACGGGGCCAGGGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGTACCACCAGACATGACAATGTTGCCGTACAGGTCCTTTCGGACATCGACATCGCACTTCATGATGGAGTTGAAAGTGGTAACGTNGATACCACCGCTCTCCAGACCCAGGACAGAAGGCTGGAACAGAGCCTCGGGAGCCCGGAATCGCTCGTTGCCA]

[+] EMBL CA759587             [TTTTTTTTTTTTTTTTTTTTTTTTATGAACAACCTCGAGTATAATTGGCTACCCCGTTCCGGGCGCGAATCGCCACCTAGAAACAAAAAAGACATCAATACTCTCTTTTTTCTTCGGAGCTGCTTGCAAACACGCCCCAGTCTCTCGACCACGACTAGAATTTTCTTTCCTAGATATGAGGTTCGTCTGTAAGGGAGTCCCTTCCGCATCGGCACGAGGAGAAATGTGTCGAAGGCCGCCATCCAATCCGCGCTATCGGGAGCTCGTGAAACGTGCGAAGGGCAGGGTGAGCAGGAGTAGTGCGAGCAGGCGCTTAAAAGCACTTGCGGGGGACGATCGAAGGACCGCTCTCGTCGTACTCCTGCTTCGAGATCCACATCTGCTGGAAGGTCGACAGGGAAGCCAGAATGGAACCACCGATCCAGACGGAGTACTTCCGCTCGGGCGGGGCAATGATCTTGACCTTCATCGACCACGGGGCCAGGGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGTACCACCAGACATGACAATGTTGCCGTACAGGTCCTTTCGGACATCGACATCGCACTTCATGATGGAGTTGAAAGTGGTAACGTNGATACCACCGCTCTCCAGACCCAGGACAGAAGGCTGGAACAGAGCCTCGGGAGCCCGGAATCGCTCGTTGCCA]


>consensus_554#0 TTTTTTTTTTTTTTTTTTTTTTTTATGAACAACCTCGAGTATAATTGGCTACCCCGTTCC GGGCGCGAATCGCCACCTAGAAACAAAAAAGACATCAATACTCTCTTTTTTCTTCGGAGC TGCTTGCAAACACGCCCCAGTCTCTCGACCACGACTAGAATTTTCTTTCCTAGATATGAG GTTCGTCTGTAAGGGAGTCCCTTCCGCATCGGCACGAGGAGAAATGTGTCGAAGGCCGCC ATCCAATCCGCGCTATCGGGAGCTCGTGAAACGTGCGAAGGGCAGGGTGAGCAGGAGTAG TGCGAGCAGGCGCTTAAAAGCACTTGCGGGGGACGATCGAAGGACCGCTCTCGTCGTACT CCTGCTTCGAGATCCACATCTGCTGGAAGGTCGACAGGGAAGCCAGAATGGAACCACCGA TCCAGACGGAGTACTTCCGCTCGGGCGGGGCAATGATCTTGACCTTCATCGACCACGGGG CCAGGGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGTACCAC CAGACATGACAATGTTGCCGTACAGGTCCTTTCGGACATCGACATCGCACTTCATGATGG AGTTGAAAGTGGTAACGTNGATACCACCGCTCTCCAGACCCAGGACAGAAGGCTGGAACA GAGCCTCGGGAGCCCGGAATCGCTCGTTGCCA



consensusID : consensus_554#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence
                              [TTTTTTTTTCTTTTTTTTTTCTAAGCGGAAAGTAAAAAAGTATTTGTATGTCAACCTCGGCTTCTACCCCTAGGCACGCATTATACGCGAACTACAAGAAAGGGGCCATCACATCTCTTCGTAACAAGCGCAACGCCCACTCTTTTGACCATGTCAAAAACTTTTCGAAAATATGAGATTCGACCTCGACGCTGGCCAACCACCCAAGGCTTAGCGTCTGTCGCCACCTCCATGATCTTGTTGTTGCGCGAGTGGGAGGATTTAATTTGCCGATCGGGTAGCTTAAAAGCACTTGCGGTGAACAATTGAGGGACCGCTCTCGTCGTACTCCTGCTTGGAGATCCACATTTGCTGGAAGGTGGACAGGGAAGCGAGAATGGAACCACCGATCCAGACGGAGTACTTTCGCTCGGGAGGAGCAATGATCTTGACCTTCATGGAAGAAGGAGCAAGAGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGTACCACCAGACATAACAATGTTTCCCTAGAGATCCTTTCGGACATGGAGATCACACTCGATGAGGGAATTAAAGAGGCAACGGGAATACCACCGGTCTCGAGACCCCGTAACGCACGGGTGGAACAGAGCCCTAAGCAGCCCGCAATGCGCTCAGTCCCAAAGGCGCAAGACCGGACGCGGTGCACGT]

[+] EMBL CA759592             [TTTTTTTTTCTTTTTTTTTTCTAAGCGGAAAGTAAAAAAGTATTTGTATGTCAACCTCGGCTTCTACCCCTAGGCACGCATTATACGCGAACTACAAGAAAGGGGCCATCACATCTCTTCGTAACAAGCGCAACGCCCACTCTTTTGACCATGTCAAAAACTTTTCGAAAATATGAGATTCGACCTCGACGCTGGCCAACCACCCAAGGCTTAGCGTCTGTCGCCACCTCCATGATCTTGTTGTTGCGCGAGTGGGAGGATTTAATTTGCCGATCGGGTAGCTTAAAAGCACTTGCGGTGAACAATTGAGGGACCGCTCTCGTCGTACTCCTGCTTGGAGATCCACATTTGCTGGAAGGTGGACAGGGAAGCGAGAATGGAACCACCGATCCAGACGGAGTACTTTCGCTCGGGAGGAGCAATGATCTTGACCTTCATGGAAGAAGGAGCAAGAGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGTACCACCAGACATAACAATGTTTCCCTAGAGATCCTTTCGGACATGGAGATCACACTCGATGAGGGAATTAAAGAGGCAACGGGAATACCACCGGTCTCGAGACCCCGTAACGCACGGGTGGAACAGAGCCCTAAGCAGCCCGCAATGCGCTCAGTCCCAAAGGCGCAAGACCGGACGCGGTGCACGT]


>consensus_554#1 TTTTTTTTTCTTTTTTTTTTCTAAGCGGAAAGTAAAAAAGTATTTGTATGTCAACCTCGG CTTCTACCCCTAGGCACGCATTATACGCGAACTACAAGAAAGGGGCCATCACATCTCTTC GTAACAAGCGCAACGCCCACTCTTTTGACCATGTCAAAAACTTTTCGAAAATATGAGATT CGACCTCGACGCTGGCCAACCACCCAAGGCTTAGCGTCTGTCGCCACCTCCATGATCTTG TTGTTGCGCGAGTGGGAGGATTTAATTTGCCGATCGGGTAGCTTAAAAGCACTTGCGGTG AACAATTGAGGGACCGCTCTCGTCGTACTCCTGCTTGGAGATCCACATTTGCTGGAAGGT GGACAGGGAAGCGAGAATGGAACCACCGATCCAGACGGAGTACTTTCGCTCGGGAGGAGC AATGATCTTGACCTTCATGGAAGAAGGAGCAAGAGCAGTGATCTCCTTCTGCATACGGTC GGAGAGACCGGGGTACATGGTGGTACCACCAGACATAACAATGTTTCCCTAGAGATCCTT TCGGACATGGAGATCACACTCGATGAGGGAATTAAAGAGGCAACGGGAATACCACCGGTC TCGAGACCCCGTAACGCACGGGTGGAACAGAGCCCTAAGCAGCCCGCAATGCGCTCAGTC CCAAAGGCGCAAGACCGGACGCGGTGCACGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_554#0      TTTTTTTTTTTTTTTTTTTTTTTTATGAACAACCTCGAG---TATAATTGGCTACCCCG- 56
consensus_554#1      TTTTTTTTTCTTTTTTTTTTCTAAGCGGAAAGTAAAAAAGTATTTGTATGTCAACCTCGG 60
                     ********* ********** *    * * *      *    * *   ** * *** ** 

consensus_554#0      TTCCGGGCGCGAATCGCCACCTAGAAACAAAAAA-GACATCAATACTCTCTTTTTTCTTC 115
consensus_554#1      CTTCTACCCCTAGGCACGCATTATACGCGAACTACAAGAAAGGGGCCATCACATCTCTTC 120
                      * *   * * *  * *    ** *  * **  *  * *      *  **   * *****

consensus_554#0      GGAGCTGCTTGCAAACACGCCCCAGTCTCTCGACCACGACTAGAATTTTCTTTCCTAGAT 175
consensus_554#1      GTAACAAGC-GCAA---CGCCC-ACTCTTTTGACCATGTCAAAAACTTT---TCGAAAAT 172
                     * * *     ****   ***** * *** * ***** * * * ** ***   **  * **

consensus_554#0      ATGAGGTTCGTCTGTAAGGGAGTCCCTTCCGCATCGGCACGAGGAGAAATGTGTCGAAGG 235
consensus_554#1      ATGAGATTCGACCTCGACGCTGGCC-------AACCACCCAAGGCTTAGCGTCT-----G 220
                     ***** **** *    * *  * **       * *  * * ***   *  ** *     *

consensus_554#0      CCGCCATCCAATCCGCGCTATCGGGAGCTCGTGAAACGTGCGAAGGGCAGGGTGAGCAGG 295
consensus_554#1      TCGCCACC---TCCATGATCTTG-----TTGT----TGCGCGAGTGGGAGGATTTA-ATT 267
                      ***** *   ***  * * * *     * **     * ****  ** *** *    *  

consensus_554#0      AGTAGTGCGAGCAGGCGCTTAAAAGCACTTGCGGGGGACGATCGAAGGACCGCTCTCGTC 355
consensus_554#1      TGCCGATCGGGTAG---CTTAAAAGCACTTGCGGTGAACAATTGAGGGACCGCTCTCGTC 324
                      *  *  ** * **   ***************** * ** ** ** **************

consensus_554#0      GTACTCCTGCTTCGAGATCCACATCTGCTGGAAGGTCGACAGGGAAGCCAGAATGGAACC 415
consensus_554#1      GTACTCCTGCTTGGAGATCCACATTTGCTGGAAGGTGGACAGGGAAGCGAGAATGGAACC 384
                     ************ *********** *********** *********** ***********

consensus_554#0      ACCGATCCAGACGGAGTACTTCCGCTCGGGCGGGGCAATGATCTTGACCTTCATCGACCA 475
consensus_554#1      ACCGATCCAGACGGAGTACTTTCGCTCGGGAGGAGCAATGATCTTGACCTTCATGGAAGA 444
                     ********************* ******** ** ******************** **  *

consensus_554#0      CGGGGCCAGGGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGT 535
consensus_554#1      AGGAGCAAGAGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGT 504
                      ** ** ** **************************************************

consensus_554#0      ACCACCAGACATGACAATGTTGCCGTACAGGTCCTTTCGGACATCGACATCGCACTTCAT 595
consensus_554#1      ACCACCAGACATAACAATGTTTCCCTAGAGATCCTTTCGGACATGGAGATCACACTCGAT 564
                     ************ ******** ** ** ** ************* ** *** ****  **

consensus_554#0      GATGGAGTTGAAAGTGGTAACGTNGATACCACCGCTCTCCAGACCCAG-GACAGAAGGCT 654
consensus_554#1      GAGGGAATT-AAAGAGGCAACGGGAATACCACCGGTCTCGAGACCCCGTAACGCACGGGT 623
                     ** *** ** **** ** ****   ********* **** ****** *  **  * ** *

consensus_554#0      GGAACAGAGCCTCGGG-AGCCCGGAAT-CGCTCGTTGCCA-------------------- 692
consensus_554#1      GGAACAGAGCCCTAAGCAGCCCGCAATGCGCTCAGTCCCAAAGGCGCAAGACCGGACGCG 683
                     ***********    * ****** *** *****  * ***                    

consensus_554#0      --------
consensus_554#1      GTGCACGT 691
                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)