These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_554#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTATGAACAACCTCGAGTATAATTGGCTACCCCGTTCCGGGCGCGAATCGCCACCTAGAAACAAAAAAGACATCAATACTCTCTTTTTTCTTCGGAGCTGCTTGCAAACACGCCCCAGTCTCTCGACCACGACTAGAATTTTCTTTCCTAGATATGAGGTTCGTCTGTAAGGGAGTCCCTTCCGCATCGGCACGAGGAGAAATGTGTCGAAGGCCGCCATCCAATCCGCGCTATCGGGAGCTCGTGAAACGTGCGAAGGGCAGGGTGAGCAGGAGTAGTGCGAGCAGGCGCTTAAAAGCACTTGCGGGGGACGATCGAAGGACCGCTCTCGTCGTACTCCTGCTTCGAGATCCACATCTGCTGGAAGGTCGACAGGGAAGCCAGAATGGAACCACCGATCCAGACGGAGTACTTCCGCTCGGGCGGGGCAATGATCTTGACCTTCATCGACCACGGGGCCAGGGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGTACCACCAGACATGACAATGTTGCCGTACAGGTCCTTTCGGACATCGACATCGCACTTCATGATGGAGTTGAAAGTGGTAACGTNGATACCACCGCTCTCCAGACCCAGGACAGAAGGCTGGAACAGAGCCTCGGGAGCCCGGAATCGCTCGTTGCCA] [+] EMBL CA759587 [TTTTTTTTTTTTTTTTTTTTTTTTATGAACAACCTCGAGTATAATTGGCTACCCCGTTCCGGGCGCGAATCGCCACCTAGAAACAAAAAAGACATCAATACTCTCTTTTTTCTTCGGAGCTGCTTGCAAACACGCCCCAGTCTCTCGACCACGACTAGAATTTTCTTTCCTAGATATGAGGTTCGTCTGTAAGGGAGTCCCTTCCGCATCGGCACGAGGAGAAATGTGTCGAAGGCCGCCATCCAATCCGCGCTATCGGGAGCTCGTGAAACGTGCGAAGGGCAGGGTGAGCAGGAGTAGTGCGAGCAGGCGCTTAAAAGCACTTGCGGGGGACGATCGAAGGACCGCTCTCGTCGTACTCCTGCTTCGAGATCCACATCTGCTGGAAGGTCGACAGGGAAGCCAGAATGGAACCACCGATCCAGACGGAGTACTTCCGCTCGGGCGGGGCAATGATCTTGACCTTCATCGACCACGGGGCCAGGGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGTACCACCAGACATGACAATGTTGCCGTACAGGTCCTTTCGGACATCGACATCGCACTTCATGATGGAGTTGAAAGTGGTAACGTNGATACCACCGCTCTCCAGACCCAGGACAGAAGGCTGGAACAGAGCCTCGGGAGCCCGGAATCGCTCGTTGCCA] consensusID : consensus_554#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [TTTTTTTTTCTTTTTTTTTTCTAAGCGGAAAGTAAAAAAGTATTTGTATGTCAACCTCGGCTTCTACCCCTAGGCACGCATTATACGCGAACTACAAGAAAGGGGCCATCACATCTCTTCGTAACAAGCGCAACGCCCACTCTTTTGACCATGTCAAAAACTTTTCGAAAATATGAGATTCGACCTCGACGCTGGCCAACCACCCAAGGCTTAGCGTCTGTCGCCACCTCCATGATCTTGTTGTTGCGCGAGTGGGAGGATTTAATTTGCCGATCGGGTAGCTTAAAAGCACTTGCGGTGAACAATTGAGGGACCGCTCTCGTCGTACTCCTGCTTGGAGATCCACATTTGCTGGAAGGTGGACAGGGAAGCGAGAATGGAACCACCGATCCAGACGGAGTACTTTCGCTCGGGAGGAGCAATGATCTTGACCTTCATGGAAGAAGGAGCAAGAGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGTACCACCAGACATAACAATGTTTCCCTAGAGATCCTTTCGGACATGGAGATCACACTCGATGAGGGAATTAAAGAGGCAACGGGAATACCACCGGTCTCGAGACCCCGTAACGCACGGGTGGAACAGAGCCCTAAGCAGCCCGCAATGCGCTCAGTCCCAAAGGCGCAAGACCGGACGCGGTGCACGT] [+] EMBL CA759592 [TTTTTTTTTCTTTTTTTTTTCTAAGCGGAAAGTAAAAAAGTATTTGTATGTCAACCTCGGCTTCTACCCCTAGGCACGCATTATACGCGAACTACAAGAAAGGGGCCATCACATCTCTTCGTAACAAGCGCAACGCCCACTCTTTTGACCATGTCAAAAACTTTTCGAAAATATGAGATTCGACCTCGACGCTGGCCAACCACCCAAGGCTTAGCGTCTGTCGCCACCTCCATGATCTTGTTGTTGCGCGAGTGGGAGGATTTAATTTGCCGATCGGGTAGCTTAAAAGCACTTGCGGTGAACAATTGAGGGACCGCTCTCGTCGTACTCCTGCTTGGAGATCCACATTTGCTGGAAGGTGGACAGGGAAGCGAGAATGGAACCACCGATCCAGACGGAGTACTTTCGCTCGGGAGGAGCAATGATCTTGACCTTCATGGAAGAAGGAGCAAGAGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGTACCACCAGACATAACAATGTTTCCCTAGAGATCCTTTCGGACATGGAGATCACACTCGATGAGGGAATTAAAGAGGCAACGGGAATACCACCGGTCTCGAGACCCCGTAACGCACGGGTGGAACAGAGCCCTAAGCAGCCCGCAATGCGCTCAGTCCCAAAGGCGCAAGACCGGACGCGGTGCACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_554#0 TTTTTTTTTTTTTTTTTTTTTTTTATGAACAACCTCGAG---TATAATTGGCTACCCCG- 56 consensus_554#1 TTTTTTTTTCTTTTTTTTTTCTAAGCGGAAAGTAAAAAAGTATTTGTATGTCAACCTCGG 60 ********* ********** * * * * * * * ** * *** ** consensus_554#0 TTCCGGGCGCGAATCGCCACCTAGAAACAAAAAA-GACATCAATACTCTCTTTTTTCTTC 115 consensus_554#1 CTTCTACCCCTAGGCACGCATTATACGCGAACTACAAGAAAGGGGCCATCACATCTCTTC 120 * * * * * * * ** * * ** * * * * ** * ***** consensus_554#0 GGAGCTGCTTGCAAACACGCCCCAGTCTCTCGACCACGACTAGAATTTTCTTTCCTAGAT 175 consensus_554#1 GTAACAAGC-GCAA---CGCCC-ACTCTTTTGACCATGTCAAAAACTTT---TCGAAAAT 172 * * * **** ***** * *** * ***** * * * ** *** ** * ** consensus_554#0 ATGAGGTTCGTCTGTAAGGGAGTCCCTTCCGCATCGGCACGAGGAGAAATGTGTCGAAGG 235 consensus_554#1 ATGAGATTCGACCTCGACGCTGGCC-------AACCACCCAAGGCTTAGCGTCT-----G 220 ***** **** * * * * ** * * * * *** * ** * * consensus_554#0 CCGCCATCCAATCCGCGCTATCGGGAGCTCGTGAAACGTGCGAAGGGCAGGGTGAGCAGG 295 consensus_554#1 TCGCCACC---TCCATGATCTTG-----TTGT----TGCGCGAGTGGGAGGATTTA-ATT 267 ***** * *** * * * * * ** * **** ** *** * * consensus_554#0 AGTAGTGCGAGCAGGCGCTTAAAAGCACTTGCGGGGGACGATCGAAGGACCGCTCTCGTC 355 consensus_554#1 TGCCGATCGGGTAG---CTTAAAAGCACTTGCGGTGAACAATTGAGGGACCGCTCTCGTC 324 * * ** * ** ***************** * ** ** ** ************** consensus_554#0 GTACTCCTGCTTCGAGATCCACATCTGCTGGAAGGTCGACAGGGAAGCCAGAATGGAACC 415 consensus_554#1 GTACTCCTGCTTGGAGATCCACATTTGCTGGAAGGTGGACAGGGAAGCGAGAATGGAACC 384 ************ *********** *********** *********** *********** consensus_554#0 ACCGATCCAGACGGAGTACTTCCGCTCGGGCGGGGCAATGATCTTGACCTTCATCGACCA 475 consensus_554#1 ACCGATCCAGACGGAGTACTTTCGCTCGGGAGGAGCAATGATCTTGACCTTCATGGAAGA 444 ********************* ******** ** ******************** ** * consensus_554#0 CGGGGCCAGGGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGT 535 consensus_554#1 AGGAGCAAGAGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGT 504 ** ** ** ************************************************** consensus_554#0 ACCACCAGACATGACAATGTTGCCGTACAGGTCCTTTCGGACATCGACATCGCACTTCAT 595 consensus_554#1 ACCACCAGACATAACAATGTTTCCCTAGAGATCCTTTCGGACATGGAGATCACACTCGAT 564 ************ ******** ** ** ** ************* ** *** **** ** consensus_554#0 GATGGAGTTGAAAGTGGTAACGTNGATACCACCGCTCTCCAGACCCAG-GACAGAAGGCT 654 consensus_554#1 GAGGGAATT-AAAGAGGCAACGGGAATACCACCGGTCTCGAGACCCCGTAACGCACGGGT 623 ** *** ** **** ** **** ********* **** ****** * ** * ** * consensus_554#0 GGAACAGAGCCTCGGG-AGCCCGGAAT-CGCTCGTTGCCA-------------------- 692 consensus_554#1 GGAACAGAGCCCTAAGCAGCCCGCAATGCGCTCAGTCCCAAAGGCGCAAGACCGGACGCG 683 *********** * ****** *** ***** * *** consensus_554#0 -------- consensus_554#1 GTGCACGT 691 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||