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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_554#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTATGAACAACCTCGAGTATAATTGGCTACCCCGTTCCGGGCGCGAATCGCCACCTAGAAACAAAAAAGACATCAATACTCTCTTTTTTCTTCGGAGCTGCTTGCAAACACGCCCCAGTCTCTCGACCACGACTAGAATTTTCTTTCCTAGATATGAGGTTCGTCTGTAAGGGAGTCCCTTCCGCATCGGCACGAGGAGAAATGTGTCGAAGGCCGCCATCCAATCCGCGCTATCGGGAGCTCGTGAAACGTGCGAAGGGCAGGGTGAGCAGGAGTAGTGCGAGCAGGCGCTTAAAAGCACTTGCGGGGGACGATCGAAGGACCGCTCTCGTCGTACTCCTGCTTCGAGATCCACATCTGCTGGAAGGTCGACAGGGAAGCCAGAATGGAACCACCGATCCAGACGGAGTACTTCCGCTCGGGCGGGGCAATGATCTTGACCTTCATCGACCACGGGGCCAGGGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGTACCACCAGACATGACAATGTTGCCGTACAGGTCCTTTCGGACATCGACATCGCACTTCATGATGGAGTTGAAAGTGGTAACGTNGATACCACCGCTCTCCAGACCCAGGACAGAAGGCTGGAACAGAGCCTCGGGAGCCCGGAATCGCTCGTTGCCA]
[+] EMBL CA759587 [TTTTTTTTTTTTTTTTTTTTTTTTATGAACAACCTCGAGTATAATTGGCTACCCCGTTCCGGGCGCGAATCGCCACCTAGAAACAAAAAAGACATCAATACTCTCTTTTTTCTTCGGAGCTGCTTGCAAACACGCCCCAGTCTCTCGACCACGACTAGAATTTTCTTTCCTAGATATGAGGTTCGTCTGTAAGGGAGTCCCTTCCGCATCGGCACGAGGAGAAATGTGTCGAAGGCCGCCATCCAATCCGCGCTATCGGGAGCTCGTGAAACGTGCGAAGGGCAGGGTGAGCAGGAGTAGTGCGAGCAGGCGCTTAAAAGCACTTGCGGGGGACGATCGAAGGACCGCTCTCGTCGTACTCCTGCTTCGAGATCCACATCTGCTGGAAGGTCGACAGGGAAGCCAGAATGGAACCACCGATCCAGACGGAGTACTTCCGCTCGGGCGGGGCAATGATCTTGACCTTCATCGACCACGGGGCCAGGGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGTACCACCAGACATGACAATGTTGCCGTACAGGTCCTTTCGGACATCGACATCGCACTTCATGATGGAGTTGAAAGTGGTAACGTNGATACCACCGCTCTCCAGACCCAGGACAGAAGGCTGGAACAGAGCCTCGGGAGCCCGGAATCGCTCGTTGCCA]
consensusID : consensus_554#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[TTTTTTTTTCTTTTTTTTTTCTAAGCGGAAAGTAAAAAAGTATTTGTATGTCAACCTCGGCTTCTACCCCTAGGCACGCATTATACGCGAACTACAAGAAAGGGGCCATCACATCTCTTCGTAACAAGCGCAACGCCCACTCTTTTGACCATGTCAAAAACTTTTCGAAAATATGAGATTCGACCTCGACGCTGGCCAACCACCCAAGGCTTAGCGTCTGTCGCCACCTCCATGATCTTGTTGTTGCGCGAGTGGGAGGATTTAATTTGCCGATCGGGTAGCTTAAAAGCACTTGCGGTGAACAATTGAGGGACCGCTCTCGTCGTACTCCTGCTTGGAGATCCACATTTGCTGGAAGGTGGACAGGGAAGCGAGAATGGAACCACCGATCCAGACGGAGTACTTTCGCTCGGGAGGAGCAATGATCTTGACCTTCATGGAAGAAGGAGCAAGAGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGTACCACCAGACATAACAATGTTTCCCTAGAGATCCTTTCGGACATGGAGATCACACTCGATGAGGGAATTAAAGAGGCAACGGGAATACCACCGGTCTCGAGACCCCGTAACGCACGGGTGGAACAGAGCCCTAAGCAGCCCGCAATGCGCTCAGTCCCAAAGGCGCAAGACCGGACGCGGTGCACGT]
[+] EMBL CA759592 [TTTTTTTTTCTTTTTTTTTTCTAAGCGGAAAGTAAAAAAGTATTTGTATGTCAACCTCGGCTTCTACCCCTAGGCACGCATTATACGCGAACTACAAGAAAGGGGCCATCACATCTCTTCGTAACAAGCGCAACGCCCACTCTTTTGACCATGTCAAAAACTTTTCGAAAATATGAGATTCGACCTCGACGCTGGCCAACCACCCAAGGCTTAGCGTCTGTCGCCACCTCCATGATCTTGTTGTTGCGCGAGTGGGAGGATTTAATTTGCCGATCGGGTAGCTTAAAAGCACTTGCGGTGAACAATTGAGGGACCGCTCTCGTCGTACTCCTGCTTGGAGATCCACATTTGCTGGAAGGTGGACAGGGAAGCGAGAATGGAACCACCGATCCAGACGGAGTACTTTCGCTCGGGAGGAGCAATGATCTTGACCTTCATGGAAGAAGGAGCAAGAGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGTACCACCAGACATAACAATGTTTCCCTAGAGATCCTTTCGGACATGGAGATCACACTCGATGAGGGAATTAAAGAGGCAACGGGAATACCACCGGTCTCGAGACCCCGTAACGCACGGGTGGAACAGAGCCCTAAGCAGCCCGCAATGCGCTCAGTCCCAAAGGCGCAAGACCGGACGCGGTGCACGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_554#0 TTTTTTTTTTTTTTTTTTTTTTTTATGAACAACCTCGAG---TATAATTGGCTACCCCG- 56
consensus_554#1 TTTTTTTTTCTTTTTTTTTTCTAAGCGGAAAGTAAAAAAGTATTTGTATGTCAACCTCGG 60
********* ********** * * * * * * * ** * *** **
consensus_554#0 TTCCGGGCGCGAATCGCCACCTAGAAACAAAAAA-GACATCAATACTCTCTTTTTTCTTC 115
consensus_554#1 CTTCTACCCCTAGGCACGCATTATACGCGAACTACAAGAAAGGGGCCATCACATCTCTTC 120
* * * * * * * ** * * ** * * * * ** * *****
consensus_554#0 GGAGCTGCTTGCAAACACGCCCCAGTCTCTCGACCACGACTAGAATTTTCTTTCCTAGAT 175
consensus_554#1 GTAACAAGC-GCAA---CGCCC-ACTCTTTTGACCATGTCAAAAACTTT---TCGAAAAT 172
* * * **** ***** * *** * ***** * * * ** *** ** * **
consensus_554#0 ATGAGGTTCGTCTGTAAGGGAGTCCCTTCCGCATCGGCACGAGGAGAAATGTGTCGAAGG 235
consensus_554#1 ATGAGATTCGACCTCGACGCTGGCC-------AACCACCCAAGGCTTAGCGTCT-----G 220
***** **** * * * * ** * * * * *** * ** * *
consensus_554#0 CCGCCATCCAATCCGCGCTATCGGGAGCTCGTGAAACGTGCGAAGGGCAGGGTGAGCAGG 295
consensus_554#1 TCGCCACC---TCCATGATCTTG-----TTGT----TGCGCGAGTGGGAGGATTTA-ATT 267
***** * *** * * * * * ** * **** ** *** * *
consensus_554#0 AGTAGTGCGAGCAGGCGCTTAAAAGCACTTGCGGGGGACGATCGAAGGACCGCTCTCGTC 355
consensus_554#1 TGCCGATCGGGTAG---CTTAAAAGCACTTGCGGTGAACAATTGAGGGACCGCTCTCGTC 324
* * ** * ** ***************** * ** ** ** **************
consensus_554#0 GTACTCCTGCTTCGAGATCCACATCTGCTGGAAGGTCGACAGGGAAGCCAGAATGGAACC 415
consensus_554#1 GTACTCCTGCTTGGAGATCCACATTTGCTGGAAGGTGGACAGGGAAGCGAGAATGGAACC 384
************ *********** *********** *********** ***********
consensus_554#0 ACCGATCCAGACGGAGTACTTCCGCTCGGGCGGGGCAATGATCTTGACCTTCATCGACCA 475
consensus_554#1 ACCGATCCAGACGGAGTACTTTCGCTCGGGAGGAGCAATGATCTTGACCTTCATGGAAGA 444
********************* ******** ** ******************** ** *
consensus_554#0 CGGGGCCAGGGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGT 535
consensus_554#1 AGGAGCAAGAGCAGTGATCTCCTTCTGCATACGGTCGGAGAGACCGGGGTACATGGTGGT 504
** ** ** **************************************************
consensus_554#0 ACCACCAGACATGACAATGTTGCCGTACAGGTCCTTTCGGACATCGACATCGCACTTCAT 595
consensus_554#1 ACCACCAGACATAACAATGTTTCCCTAGAGATCCTTTCGGACATGGAGATCACACTCGAT 564
************ ******** ** ** ** ************* ** *** **** **
consensus_554#0 GATGGAGTTGAAAGTGGTAACGTNGATACCACCGCTCTCCAGACCCAG-GACAGAAGGCT 654
consensus_554#1 GAGGGAATT-AAAGAGGCAACGGGAATACCACCGGTCTCGAGACCCCGTAACGCACGGGT 623
** *** ** **** ** **** ********* **** ****** * ** * ** *
consensus_554#0 GGAACAGAGCCTCGGG-AGCCCGGAAT-CGCTCGTTGCCA-------------------- 692
consensus_554#1 GGAACAGAGCCCTAAGCAGCCCGCAATGCGCTCAGTCCCAAAGGCGCAAGACCGGACGCG 683
*********** * ****** *** ***** * ***
consensus_554#0 --------
consensus_554#1 GTGCACGT 691
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||