cluster # 5545

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5545 cluster # 5545 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5545#0 length = 770 sequences # 3

consensusID : consensus_5545#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 770
fasta sequence

                              [CCGTGCCCTGCCTCCCTTATCCAACAAGCGTAATCGATCGATCGATCCATCCATGTCTCTGCATCCGGGTAGTGGGTACAAATAAGCTGAGGCCTTCTCGCGAGAAATCAAAACCGTATCACCTCACACTCACAGCAGTTCGGCTGACCATGGCGAGAGCGGCGGCGGCGGCGGCCTTCGTCTTCGTCTCCCTCGCCCTCCTCTGCGACG-CAGCCAAGGCGAAGGGGCGGCGGCGGCGGCGGCGTGCAGGGCGGCGGATTTGGTGGTGAGGCAGAGGGCGACGGGGCGGGTGGTGGAGGGGAAGCC-GAGTACGCGGTGGAGGTGGCGAACCGGTGCCGGTGCGCGCAGTCG-AGGGTGGTGCTGCGATGCTACGGGCTCAGCAGCGTCGAGTCGGTGGACCCGCGCGCCATCCGCCCCGTCGATGACGAGCGCTGCGTGCTCCGCGGTGGCCGCGTCATCCGTCGCGGCGCGCCGCCCGTGCGCTTCACCTACGCCTGGATGACGCCCTTCGACTTCCCCCTCGTAAGCTCGCAGGTCCACTGCTAGTGCTTAGCTAGCCTAGCAAGCACTGTCACCCACTCTATCATCAGCTCGTCGTCAAAACGGCAGAAGCGAAAATGAATTAGCTAGTGCAGAGTGTATCATATGTAAACCCCAGTACTGCACCGTGTTAGTGCTGGGTAATTTCAAACTTCTGATATTGTTTTTGGTTTTGGAAAAAAGAAGGGGGAAGCAGTGGAGCACCCTCCAGAACTGTTTGTGATCAACTA]

[+] EMBL AU082407             [CCGTGCCCTGCCTCCCTTATCCAACAAGCGTAATCGATCGATCGATCCATCCATGTCTCTGCATCCGGGTAGTGGGTACAAATAAGCTGAGGCCTTCTCGCGAGAAATCAAAACCGTATCACCTCACACTCACAGCAGTTCGGCTGACCATGGCGAGAGCGGCGGCGGCGGCGGCCTTCGTCTTCGTCTCCCTCGCCCTCCTCTGCGACG CAGCCAAGGCGAAGGGGCGGCGGCGGCGGCGGCGTGCAGGGCGGCGGATTTGGTGGTGAGGCAGAGGGCGACGGGGCGGGTGGTGGAGGGGAAGCC GAGTACGCGGTGGAGGTGGCGAACCGGTGCCGGTGCGCG ANTCGAAGGGTTGTTCTNCGAT CTAa                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK111241             [                                                                                                                     ATCACCTCACACTCACAGCAGTTCGGCTGACCATGGCGAGAGCGGCGGCGGCGGCGGCCTTCGTCTTCGTCTCCCTCGCCCTCCTCTGCGACGCCAGCCAAGGCGAAGGGGCGGCGGCGGCGGCGGCGTGCAGGGCGGCGGATTTGGTGGTGAGGCAGAGGGCGACGGGGCGGGTGGTGGAGGGGAAGCCGGAGTACGCGGTGGAGGTGGCGAACCGGTGCCGGTGCGCGCAGTCG AGGGTGGTGCTGCGATGCTACGGGCTCAGCAGCGTCGAGTCGGTGGACCCGCGCGCCATCCGCCCCGTCGATGACGAGCGCTGCGTGCTCCGCGGTGGCCGCGTCATCCGTCGCGGCGCGCCGCCCGTGCGCTTCACCTACGCCTGGATGACGCCCTTCGACTTCCCCCTCGTAAGCTCGCAGGTCCACTGCTAGTGCTTAGCTAGCCTAGCAAGCACTGTCACCCACTCTATCATCAGCTCGTCGTCAAAACGGCAGAAGCGAAAATGAATTAGCTAGTGCAGAGTGTATCATATGTAAACCCCAGTACTGCACCGTGTTAGTGCTGGGTAATTTCAAACTTCTGATATTGTTTTTGGTTTTGGAAAAAAGAAGGGGGAAGCAGTGGAGCACCCTCCAGAACTGTTTGTGATCAACTA]
[+] EMBL AU029401             [                                                                                                                                                                                                                                                                                                                          GCGGTGGAGGTGGCGAACCGGTGCCGGTGCGCGCAGTCG AGGGTGGTGCTGCGATGCTACGGGCTCAGCAGCGTCGAGTCGGTGGACCCGCGCGCNATCCGCCCCGTCGATGACGAGCGCTGCGTGCTCCGCGGTGGCCGCGTCATCCGCCGCGGCGCGCCGCCCGTGCGCTTCACCTACGCCTGGATGACGCCCTTCGACTTCCCCCTCGTAAGCTCGCAGGTCCACTGCTAGTGCTTAGCTAGCCTAGCAAGCACTGTCACCCACTCTATCATCAGCTCGTCGTCAAAACGGCAGAAGCGAAAATGAATTAGCTAGTGCAGAGTGTATCATATGTAAACCCCAGTACTGCACCGTGTTAGTGCTGGGTAATTTCAAACTTCTGATATTGTTTTTGGTTTTGGAAAAAAAAAaaa                                          ]




>consensus_5545#0
CCGTGCCCTGCCTCCCTTATCCAACAAGCGTAATCGATCGATCGATCCATCCATGTCTCT
GCATCCGGGTAGTGGGTACAAATAAGCTGAGGCCTTCTCGCGAGAAATCAAAACCGTATC
ACCTCACACTCACAGCAGTTCGGCTGACCATGGCGAGAGCGGCGGCGGCGGCGGCCTTCG
TCTTCGTCTCCCTCGCCCTCCTCTGCGACGCAGCCAAGGCGAAGGGGCGGCGGCGGCGGC
GGCGTGCAGGGCGGCGGATTTGGTGGTGAGGCAGAGGGCGACGGGGCGGGTGGTGGAGGG
GAAGCCGAGTACGCGGTGGAGGTGGCGAACCGGTGCCGGTGCGCGCAGTCGAGGGTGGTG
CTGCGATGCTACGGGCTCAGCAGCGTCGAGTCGGTGGACCCGCGCGCCATCCGCCCCGTC
GATGACGAGCGCTGCGTGCTCCGCGGTGGCCGCGTCATCCGTCGCGGCGCGCCGCCCGTG
CGCTTCACCTACGCCTGGATGACGCCCTTCGACTTCCCCCTCGTAAGCTCGCAGGTCCAC
TGCTAGTGCTTAGCTAGCCTAGCAAGCACTGTCACCCACTCTATCATCAGCTCGTCGTCA
AAACGGCAGAAGCGAAAATGAATTAGCTAGTGCAGAGTGTATCATATGTAAACCCCAGTA
CTGCACCGTGTTAGTGCTGGGTAATTTCAAACTTCTGATATTGTTTTTGGTTTTGGAAAA
AAGAAGGGGGAAGCAGTGGAGCACCCTCCAGAACTGTTTGTGATCAACTA

clustalw multiple alignements is not computed in this case