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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1400 fasta sequence
[GCTCTCCGGGATTTGTCCTGGCAAGTGCCACAACAGCGCAATCAGCAAAAGAAACCTCATCATCAGTGTGCTGCTCGGATTCTACCTGGGAGTAAACCCAAGTCACCTTCTCTGTCACAGGAGAGGTATTAACTGACCGGAGAGAGAGAGAGAGACGATGTCGTCGGAGGTTGAGAGGAAGACGGTGTGCGTCACCGGCGGCAACGGGTACGTTGCTTCATTGCTCGTCAAGATGCTCCTGGAGAAAGGATACGCTGTTCAGACAAGCGTCAGAGATCCCAATAACCCGGAGAAGGTCTCCCATTTCAAGGACATGGAAAAACTCGGCCCCCTGAAGGTCTTTCGCGCCAACTTGGAGGATGAAGGCAGCTTCGACGAGGCCGTCGCCGGCTGCCACTACGCCTTCCTCGTCGCCGCTCCGGTGTACGACAAGAGCCACAAGTCCGACGATCTCGAGAAAGAGATAGTCCAAGGCGGCGTCGAGGGCACACTGAACGTGATGAGGTCGTGCGCGAGAGCCGGCACGGTGAAGCGCGTGATCCTGACGTCGTCGACGGCCGCCGTCTCCAGCCTGCGGCCGCTGGAAGGCGCCGGCCATGTCCTCGACGAGTCGTCCTGGTCCGACATCGAGTACCTCAGATCCATGGAGAAGCTGTCGCCGACGCAGGCGTACTCGATCTCCAAGGTTCTTTCGGAGAAGGAGGCGACCAAGTTCGCGGAGGAGAACGGTCTCAGCCTGGTGACCCTCTGCCCGGTCGTCGCCGTCGGAGCATCGCCGGCGGTGAGGGTCGATACCAGCGTCCCGGCCTGCCTCTCGTTGATAACCGGCGACGAGGAGATGATGAACATCCTCAAGGGCATCGAGAAGGCGTCCGGGTGGTCGATGCCGATGGTCCACATCGAGGACGTGTGCCGCGCCGAGATCTTCGTCGCCGAGGAGGAGTCGGCGTCGGGGAGGTACATCTGCGGCAGCCTCAACACCACGGTCACCGAGATCGCCGGCTTCCTGGCGGCCAAGTACCCCCAGTACAACGTCAGATGCGATTGCATCGAAGAGCATCACCCCGAGAAGCCGACCATCTCGCTCTCGTCGGCGAAGCTCATCGGCGAAGGGTTCGAGTTCAAGTACAAGAACCTGGACGAGATGTACGACGACCTCGTCGCGTACGGCAAGGCCCTGGGGTTGATCCCCAACTGATGGTGATGATGGGCGGCGTAATTCCACTGCTTTGGCGATTACGACCAAACGTGTGTTGCTTTCAAAAATACTATTGTGTCTAGCATTCTATTGCTACATTGCTAGTAGTACTAGTACCAAGTTCCAATACATTTGGCGGTTTGGCTGTACTTCGTTCTGTTCATGTAAGAGGAGGATTGAGAATTTGAGATCCTCTTAGGGG]
[+] EMBL AK072654 [GCTCTCCGGGATTTGTCCTGGCAAGTGCCACAACAGCGCAATCAGCAAAAGAAACCTCATCATCAGTGTGCTGCTCGGATTCTACCTGGGAGTAAACCCAAGTCACCTTCTCTGTCACAGGAGAGGTATTAACTGACCGGAGAGAGAGAGAGAGACGATGTCGTCGGAGGTTGAGAGGAAGACGGTGTGCGTCACCGGCGGCAACGGGTACGTTGCTTCATTGCTCGTCAAGATGCTCCTGGAGAAAGGATACGCTGTTCAGACAAGCGTCAGAGATCCCAATAACCCGGAGAAGGTCTCCCATTTCAAGGACATGGAAAAACTCGGCCCCCTGAAGGTCTTTCGCGCCAACTTGGAGGATGAAGGCAGCTTCGACGAGGCCGTCGCCGGCTGCCACTACGCCTTCCTCGTCGCCGCTCCGGTGTACGACAAGAGCCACAAGTCCGACGATCTCGAGAAAGAGATAGTCCAAGGCGGCGTCGAGGGCACACTGAACGTGATGAGGTCGTGCGCGAGAGCCGGCACGGTGAAGCGCGTGATCCTGACGTCGTCGACGGCCGCCGTCTCCAGCCTGCGGCCGCTGGAAGGCGCCGGCCATGTCCTCGACGAGTCGTCCTGGTCCGACATCGAGTACCTCAGATCCATGGAGAAGCTGTCGCCGACGCAGGCGTACTCGATCTCCAAGGTTCTTTCGGAGAAGGAGGCGACCAAGTTCGCGGAGGAGAACGGTCTCAGCCTGGTGACCCTCTGCCCGGTCGTCGCCGTCGGAGCATCGCCGGCGGTGAGGGTCGATACCAGCGTCCCGGCCTGCCTCTCGTTGATAACCGGCGACGAGGAGATGATGAACATCCTCAAGGGCATCGAGAAGGCGTCCGGGTGGTCGATGCCGATGGTCCACATCGAGGACGTGTGCCGCGCCGAGATCTTCGTCGCCGAGGAGGAGTCGGCGTCGGGGAGGTACATCTGCGGCAGCCTCAACACCACGGTCACCGAGATCGCCGGCTTCCTGGCGGCCAAGTACCCCCAGTACAACGTCAGATGCGATTGCATCGAAGAGCATCACCCCGAGAAGCCGACCATCTCGCTCTCGTCGGCGAAGCTCATCGGCGAAGGGTTCGAGTTCAAGTACAAGAACCTGGACGAGATGTACGACGACCTCGTCGCGTACGGCAAGGCCCTGGGGTTGATCCCCAACTGATGGTGATGATGGGCGGCGTAATTCCACTGCTTTGGCGATTACGACCAAACGTGTGTTGCTTTCAAAAATACTATTGTGTCTAGCATTCTATTGCTACATTGCTAGTAGTACTAGTACCAAGTTCCAATACATTTGGCGGTTTGGCTGTACTTCGTTCTGTTCATGTAAGAGGAGGATTGAGAATTTGAGATCCTCTTAGGGG]
[+] EMBL CB620251 [ AGTCCCACAACAGCGCAATCAGCAAAAGAAACCTCATCATCAGTGTGCTGCTCGGATTCTACCTGGGAGTAAACCCAAGTCACCTTCTCTGTCACAGGAGAGGTATTAACTGACCGGAGAGAGAGAGAGAGACGATGTCGTCGGAGGTTGAGAGGAAGACGGTGTGCGTCACCGGCGGCAACGGGTACGTTGCTTCATTGCTCGTCAAGATGCTCCTGGAGAAAGGATACGCTGTTCAGACAACCGTCAGAGATCCCAATAACCCGGAGAAGGTCTCCCATTTCAAGGACATGGAAAAACTCGGCCCCCTGAAGGTCTTTCGCGCCAACTTGGAGGATGAAGGCAGCTTCGACGAGGCCGTCGCCGGCTGCCACTACGCCTTCCTCGTCGCCGCTCCGGTGTACGACAAGAGCCACAAGTCCGACGATCTCGAGAAAGAGATAGTCCAAGGCGGCGTCGAGGGCACACTGAACGTGATGAGGTCGTGCGCGAGAGCCGGCACGGTGAAGCGCGTGATCCTGACGTCGTCGACGGCCGCCGTCTCCAGCCTGCGGCCGCTGGAAGGCGCCGGCCATGTCCTCGACGAGTCGTCCTGGTCCGACATCGAGTACCTCAGATCCATGGAGAAGCTGTCGCCGACGCAGGCGTACTCGATCTCCAAGGTTCTTTCGGAGAAGGAGGCGACCAAGTTCGCGGAGGAGAACGGTCTCAGCCTGGTGACCCTCTGCCCGGTCGTCGCCGTCGGAGCATCGCCGGCGGTGAGGGTCGATACCAGCGTCCCGGCCTGCCTCTCGTTG ]
consensusID : consensus_5546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[GAGAAGCTGTCGCCGACGCAGGCGTACTCGATCTCCAAGGTTCTTTCGGAGAAGGAGGCGACCAAGTTCGCGGAGGAGAACGGTCTCAGCCTGGTGACCCTCTGCCCGGTCGTCGCCGTCGGAGCATCGCCGGCGGTGAGGGTCGATACCAGCGTCCCGGCCTGCCTCTCGTTGATAACCGGCGACGAGGAGATGATGAACATCCTCAAGGGCATCGAGAAGGCGTCCGGGTGGTCGATGCCGATGGTCCACATCGAGGACGTGTGCCGCGCCGAGATCTTCGTCGCCGAGGAGGAGTCGGCGTCGGGGAGGTACATCTGCGGCAGCCTCAACACCACGGTCACCGAGATCGCCGGCTTCCTGGCTGCCAAGTACCCCCAGTACAACGTCAGATGCGATTGCATCGAAGAGCATCACCCCAAGAAGCCGACCATCTCGCTCTCGTCGGGGAAGCTCATCGGCGAAGGGTTCGAGTTCAAGTACAAGAACCTGGACGAGATGTACGACGACCTCGTCGCGTACGGCAAGGCCCTGGGGTTGATCCCCAACTGATGGTGATGATGGGCGGCGTAATTCCACTGCTTTGGCGATTACGACCAAACGTGTGTTGCTTTCAAAAATACTATTGTGTCTAGCATTCTATTGCTAGATTGCTAGTAGTACTAGTACCAAGTTCCAATCAATAAAAGA]
[-] EMBL CB620252 [GAGAAGCTGTCGCCGACGCAGGCGTACTCGATCTCCAAGGTTCTTTCGGAGAAGGAGGCGACCAAGTTCGCGGAGGAGAACGGTCTCAGCCTGGTGACCCTCTGCCCGGTCGTCGCCGTCGGAGCATCGCCGGCGGTGAGGGTCGATACCAGCGTCCCGGCCTGCCTCTCGTTGATAACCGGCGACGAGGAGATGATGAACATCCTCAAGGGCATCGAGAAGGCGTCCGGGTGGTCGATGCCGATGGTCCACATCGAGGACGTGTGCCGCGCCGAGATCTTCGTCGCCGAGGAGGAGTCGGCGTCGGGGAGGTACATCTGCGGCAGCCTCAACACCACGGTCACCGAGATCGCCGGCTTCCTGGCTGCCAAGTACCCCCAGTACAACGTCAGATGCGATTGCATCGAAGAGCATCACCCCAAGAAGCCGACCATCTCGCTCTCGTCGGGGAAGCTCATCGGCGAAGGGTTCGAGTTCAAGTACAAGAACCTGGACGAGATGTACGACGACCTCGTCGCGTACGGCAAGGCCCTGGGGTTGATCCCCAACTGATGGTGATGATGGGCGGCGTAATTCCACTGCTTTGGCGATTACGACCAAACGTGTGTTGCTTTCAAAAATACTATTGTGTCTAGCATTCTATTGCTAGATTGCTAGTAGTACTAGTACCAAGTTCCAATCAATAAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5546#0 GCTCTCCGGGATTTGTCCTGGCAAGTGCCACAACAGCGCAATCAGCAAAAGAAACCTCAT 60
consensus_5546#1 ------------------------------------------------------------
consensus_5546#0 CATCAGTGTGCTGCTCGGATTCTACCTGGGAGTAAACCCAAGTCACCTTCTCTGTCACAG 120
consensus_5546#1 ------------------------------------------------------------
consensus_5546#0 GAGAGGTATTAACTGACCGGAGAGAGAGAGAGAGACGATGTCGTCGGAGGTTGAGAGGAA 180
consensus_5546#1 ------------------------------------------------------------
consensus_5546#0 GACGGTGTGCGTCACCGGCGGCAACGGGTACGTTGCTTCATTGCTCGTCAAGATGCTCCT 240
consensus_5546#1 ------------------------------------------------------------
consensus_5546#0 GGAGAAAGGATACGCTGTTCAGACAAGCGTCAGAGATCCCAATAACCCGGAGAAGGTCTC 300
consensus_5546#1 ------------------------------------------------------------
consensus_5546#0 CCATTTCAAGGACATGGAAAAACTCGGCCCCCTGAAGGTCTTTCGCGCCAACTTGGAGGA 360
consensus_5546#1 ------------------------------------------------------------
consensus_5546#0 TGAAGGCAGCTTCGACGAGGCCGTCGCCGGCTGCCACTACGCCTTCCTCGTCGCCGCTCC 420
consensus_5546#1 ------------------------------------------------------------
consensus_5546#0 GGTGTACGACAAGAGCCACAAGTCCGACGATCTCGAGAAAGAGATAGTCCAAGGCGGCGT 480
consensus_5546#1 ------------------------------------------------------------
consensus_5546#0 CGAGGGCACACTGAACGTGATGAGGTCGTGCGCGAGAGCCGGCACGGTGAAGCGCGTGAT 540
consensus_5546#1 ------------------------------------------------------------
consensus_5546#0 CCTGACGTCGTCGACGGCCGCCGTCTCCAGCCTGCGGCCGCTGGAAGGCGCCGGCCATGT 600
consensus_5546#1 ------------------------------------------------------------
consensus_5546#0 CCTCGACGAGTCGTCCTGGTCCGACATCGAGTACCTCAGATCCATGGAGAAGCTGTCGCC 660
consensus_5546#1 ----------------------------------------------GAGAAGCTGTCGCC 14
**************
consensus_5546#0 GACGCAGGCGTACTCGATCTCCAAGGTTCTTTCGGAGAAGGAGGCGACCAAGTTCGCGGA 720
consensus_5546#1 GACGCAGGCGTACTCGATCTCCAAGGTTCTTTCGGAGAAGGAGGCGACCAAGTTCGCGGA 74
************************************************************
consensus_5546#0 GGAGAACGGTCTCAGCCTGGTGACCCTCTGCCCGGTCGTCGCCGTCGGAGCATCGCCGGC 780
consensus_5546#1 GGAGAACGGTCTCAGCCTGGTGACCCTCTGCCCGGTCGTCGCCGTCGGAGCATCGCCGGC 134
************************************************************
consensus_5546#0 GGTGAGGGTCGATACCAGCGTCCCGGCCTGCCTCTCGTTGATAACCGGCGACGAGGAGAT 840
consensus_5546#1 GGTGAGGGTCGATACCAGCGTCCCGGCCTGCCTCTCGTTGATAACCGGCGACGAGGAGAT 194
************************************************************
consensus_5546#0 GATGAACATCCTCAAGGGCATCGAGAAGGCGTCCGGGTGGTCGATGCCGATGGTCCACAT 900
consensus_5546#1 GATGAACATCCTCAAGGGCATCGAGAAGGCGTCCGGGTGGTCGATGCCGATGGTCCACAT 254
************************************************************
consensus_5546#0 CGAGGACGTGTGCCGCGCCGAGATCTTCGTCGCCGAGGAGGAGTCGGCGTCGGGGAGGTA 960
consensus_5546#1 CGAGGACGTGTGCCGCGCCGAGATCTTCGTCGCCGAGGAGGAGTCGGCGTCGGGGAGGTA 314
************************************************************
consensus_5546#0 CATCTGCGGCAGCCTCAACACCACGGTCACCGAGATCGCCGGCTTCCTGGCGGCCAAGTA 1020
consensus_5546#1 CATCTGCGGCAGCCTCAACACCACGGTCACCGAGATCGCCGGCTTCCTGGCTGCCAAGTA 374
*************************************************** ********
consensus_5546#0 CCCCCAGTACAACGTCAGATGCGATTGCATCGAAGAGCATCACCCCGAGAAGCCGACCAT 1080
consensus_5546#1 CCCCCAGTACAACGTCAGATGCGATTGCATCGAAGAGCATCACCCCAAGAAGCCGACCAT 434
********************************************** *************
consensus_5546#0 CTCGCTCTCGTCGGCGAAGCTCATCGGCGAAGGGTTCGAGTTCAAGTACAAGAACCTGGA 1140
consensus_5546#1 CTCGCTCTCGTCGGGGAAGCTCATCGGCGAAGGGTTCGAGTTCAAGTACAAGAACCTGGA 494
************** *********************************************
consensus_5546#0 CGAGATGTACGACGACCTCGTCGCGTACGGCAAGGCCCTGGGGTTGATCCCCAACTGATG 1200
consensus_5546#1 CGAGATGTACGACGACCTCGTCGCGTACGGCAAGGCCCTGGGGTTGATCCCCAACTGATG 554
************************************************************
consensus_5546#0 GTGATGATGGGCGGCGTAATTCCACTGCTTTGGCGATTACGACCAAACGTGTGTTGCTTT 1260
consensus_5546#1 GTGATGATGGGCGGCGTAATTCCACTGCTTTGGCGATTACGACCAAACGTGTGTTGCTTT 614
************************************************************
consensus_5546#0 CAAAAATACTATTGTGTCTAGCATTCTATTGCTACATTGCTAGTAGTACTAGTACCAAGT 1320
consensus_5546#1 CAAAAATACTATTGTGTCTAGCATTCTATTGCTAGATTGCTAGTAGTACTAGTACCAAGT 674
********************************** *************************
consensus_5546#0 TCCAATACATTTGGCGGTTTGGCTGTACTTCGTTCTGTTCATGTAAGAGGAGGATTGAGA 1380
consensus_5546#1 TCCAAT-CAATAAAAGA------------------------------------------- 690
****** ** * *
consensus_5546#0 ATTTGAGATCCTCTTAGGGG 1400
consensus_5546#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||