These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1400 fasta sequence [GCTCTCCGGGATTTGTCCTGGCAAGTGCCACAACAGCGCAATCAGCAAAAGAAACCTCATCATCAGTGTGCTGCTCGGATTCTACCTGGGAGTAAACCCAAGTCACCTTCTCTGTCACAGGAGAGGTATTAACTGACCGGAGAGAGAGAGAGAGACGATGTCGTCGGAGGTTGAGAGGAAGACGGTGTGCGTCACCGGCGGCAACGGGTACGTTGCTTCATTGCTCGTCAAGATGCTCCTGGAGAAAGGATACGCTGTTCAGACAAGCGTCAGAGATCCCAATAACCCGGAGAAGGTCTCCCATTTCAAGGACATGGAAAAACTCGGCCCCCTGAAGGTCTTTCGCGCCAACTTGGAGGATGAAGGCAGCTTCGACGAGGCCGTCGCCGGCTGCCACTACGCCTTCCTCGTCGCCGCTCCGGTGTACGACAAGAGCCACAAGTCCGACGATCTCGAGAAAGAGATAGTCCAAGGCGGCGTCGAGGGCACACTGAACGTGATGAGGTCGTGCGCGAGAGCCGGCACGGTGAAGCGCGTGATCCTGACGTCGTCGACGGCCGCCGTCTCCAGCCTGCGGCCGCTGGAAGGCGCCGGCCATGTCCTCGACGAGTCGTCCTGGTCCGACATCGAGTACCTCAGATCCATGGAGAAGCTGTCGCCGACGCAGGCGTACTCGATCTCCAAGGTTCTTTCGGAGAAGGAGGCGACCAAGTTCGCGGAGGAGAACGGTCTCAGCCTGGTGACCCTCTGCCCGGTCGTCGCCGTCGGAGCATCGCCGGCGGTGAGGGTCGATACCAGCGTCCCGGCCTGCCTCTCGTTGATAACCGGCGACGAGGAGATGATGAACATCCTCAAGGGCATCGAGAAGGCGTCCGGGTGGTCGATGCCGATGGTCCACATCGAGGACGTGTGCCGCGCCGAGATCTTCGTCGCCGAGGAGGAGTCGGCGTCGGGGAGGTACATCTGCGGCAGCCTCAACACCACGGTCACCGAGATCGCCGGCTTCCTGGCGGCCAAGTACCCCCAGTACAACGTCAGATGCGATTGCATCGAAGAGCATCACCCCGAGAAGCCGACCATCTCGCTCTCGTCGGCGAAGCTCATCGGCGAAGGGTTCGAGTTCAAGTACAAGAACCTGGACGAGATGTACGACGACCTCGTCGCGTACGGCAAGGCCCTGGGGTTGATCCCCAACTGATGGTGATGATGGGCGGCGTAATTCCACTGCTTTGGCGATTACGACCAAACGTGTGTTGCTTTCAAAAATACTATTGTGTCTAGCATTCTATTGCTACATTGCTAGTAGTACTAGTACCAAGTTCCAATACATTTGGCGGTTTGGCTGTACTTCGTTCTGTTCATGTAAGAGGAGGATTGAGAATTTGAGATCCTCTTAGGGG] [+] EMBL AK072654 [GCTCTCCGGGATTTGTCCTGGCAAGTGCCACAACAGCGCAATCAGCAAAAGAAACCTCATCATCAGTGTGCTGCTCGGATTCTACCTGGGAGTAAACCCAAGTCACCTTCTCTGTCACAGGAGAGGTATTAACTGACCGGAGAGAGAGAGAGAGACGATGTCGTCGGAGGTTGAGAGGAAGACGGTGTGCGTCACCGGCGGCAACGGGTACGTTGCTTCATTGCTCGTCAAGATGCTCCTGGAGAAAGGATACGCTGTTCAGACAAGCGTCAGAGATCCCAATAACCCGGAGAAGGTCTCCCATTTCAAGGACATGGAAAAACTCGGCCCCCTGAAGGTCTTTCGCGCCAACTTGGAGGATGAAGGCAGCTTCGACGAGGCCGTCGCCGGCTGCCACTACGCCTTCCTCGTCGCCGCTCCGGTGTACGACAAGAGCCACAAGTCCGACGATCTCGAGAAAGAGATAGTCCAAGGCGGCGTCGAGGGCACACTGAACGTGATGAGGTCGTGCGCGAGAGCCGGCACGGTGAAGCGCGTGATCCTGACGTCGTCGACGGCCGCCGTCTCCAGCCTGCGGCCGCTGGAAGGCGCCGGCCATGTCCTCGACGAGTCGTCCTGGTCCGACATCGAGTACCTCAGATCCATGGAGAAGCTGTCGCCGACGCAGGCGTACTCGATCTCCAAGGTTCTTTCGGAGAAGGAGGCGACCAAGTTCGCGGAGGAGAACGGTCTCAGCCTGGTGACCCTCTGCCCGGTCGTCGCCGTCGGAGCATCGCCGGCGGTGAGGGTCGATACCAGCGTCCCGGCCTGCCTCTCGTTGATAACCGGCGACGAGGAGATGATGAACATCCTCAAGGGCATCGAGAAGGCGTCCGGGTGGTCGATGCCGATGGTCCACATCGAGGACGTGTGCCGCGCCGAGATCTTCGTCGCCGAGGAGGAGTCGGCGTCGGGGAGGTACATCTGCGGCAGCCTCAACACCACGGTCACCGAGATCGCCGGCTTCCTGGCGGCCAAGTACCCCCAGTACAACGTCAGATGCGATTGCATCGAAGAGCATCACCCCGAGAAGCCGACCATCTCGCTCTCGTCGGCGAAGCTCATCGGCGAAGGGTTCGAGTTCAAGTACAAGAACCTGGACGAGATGTACGACGACCTCGTCGCGTACGGCAAGGCCCTGGGGTTGATCCCCAACTGATGGTGATGATGGGCGGCGTAATTCCACTGCTTTGGCGATTACGACCAAACGTGTGTTGCTTTCAAAAATACTATTGTGTCTAGCATTCTATTGCTACATTGCTAGTAGTACTAGTACCAAGTTCCAATACATTTGGCGGTTTGGCTGTACTTCGTTCTGTTCATGTAAGAGGAGGATTGAGAATTTGAGATCCTCTTAGGGG] [+] EMBL CB620251 [ AGTCCCACAACAGCGCAATCAGCAAAAGAAACCTCATCATCAGTGTGCTGCTCGGATTCTACCTGGGAGTAAACCCAAGTCACCTTCTCTGTCACAGGAGAGGTATTAACTGACCGGAGAGAGAGAGAGAGACGATGTCGTCGGAGGTTGAGAGGAAGACGGTGTGCGTCACCGGCGGCAACGGGTACGTTGCTTCATTGCTCGTCAAGATGCTCCTGGAGAAAGGATACGCTGTTCAGACAACCGTCAGAGATCCCAATAACCCGGAGAAGGTCTCCCATTTCAAGGACATGGAAAAACTCGGCCCCCTGAAGGTCTTTCGCGCCAACTTGGAGGATGAAGGCAGCTTCGACGAGGCCGTCGCCGGCTGCCACTACGCCTTCCTCGTCGCCGCTCCGGTGTACGACAAGAGCCACAAGTCCGACGATCTCGAGAAAGAGATAGTCCAAGGCGGCGTCGAGGGCACACTGAACGTGATGAGGTCGTGCGCGAGAGCCGGCACGGTGAAGCGCGTGATCCTGACGTCGTCGACGGCCGCCGTCTCCAGCCTGCGGCCGCTGGAAGGCGCCGGCCATGTCCTCGACGAGTCGTCCTGGTCCGACATCGAGTACCTCAGATCCATGGAGAAGCTGTCGCCGACGCAGGCGTACTCGATCTCCAAGGTTCTTTCGGAGAAGGAGGCGACCAAGTTCGCGGAGGAGAACGGTCTCAGCCTGGTGACCCTCTGCCCGGTCGTCGCCGTCGGAGCATCGCCGGCGGTGAGGGTCGATACCAGCGTCCCGGCCTGCCTCTCGTTG ] consensusID : consensus_5546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [GAGAAGCTGTCGCCGACGCAGGCGTACTCGATCTCCAAGGTTCTTTCGGAGAAGGAGGCGACCAAGTTCGCGGAGGAGAACGGTCTCAGCCTGGTGACCCTCTGCCCGGTCGTCGCCGTCGGAGCATCGCCGGCGGTGAGGGTCGATACCAGCGTCCCGGCCTGCCTCTCGTTGATAACCGGCGACGAGGAGATGATGAACATCCTCAAGGGCATCGAGAAGGCGTCCGGGTGGTCGATGCCGATGGTCCACATCGAGGACGTGTGCCGCGCCGAGATCTTCGTCGCCGAGGAGGAGTCGGCGTCGGGGAGGTACATCTGCGGCAGCCTCAACACCACGGTCACCGAGATCGCCGGCTTCCTGGCTGCCAAGTACCCCCAGTACAACGTCAGATGCGATTGCATCGAAGAGCATCACCCCAAGAAGCCGACCATCTCGCTCTCGTCGGGGAAGCTCATCGGCGAAGGGTTCGAGTTCAAGTACAAGAACCTGGACGAGATGTACGACGACCTCGTCGCGTACGGCAAGGCCCTGGGGTTGATCCCCAACTGATGGTGATGATGGGCGGCGTAATTCCACTGCTTTGGCGATTACGACCAAACGTGTGTTGCTTTCAAAAATACTATTGTGTCTAGCATTCTATTGCTAGATTGCTAGTAGTACTAGTACCAAGTTCCAATCAATAAAAGA] [-] EMBL CB620252 [GAGAAGCTGTCGCCGACGCAGGCGTACTCGATCTCCAAGGTTCTTTCGGAGAAGGAGGCGACCAAGTTCGCGGAGGAGAACGGTCTCAGCCTGGTGACCCTCTGCCCGGTCGTCGCCGTCGGAGCATCGCCGGCGGTGAGGGTCGATACCAGCGTCCCGGCCTGCCTCTCGTTGATAACCGGCGACGAGGAGATGATGAACATCCTCAAGGGCATCGAGAAGGCGTCCGGGTGGTCGATGCCGATGGTCCACATCGAGGACGTGTGCCGCGCCGAGATCTTCGTCGCCGAGGAGGAGTCGGCGTCGGGGAGGTACATCTGCGGCAGCCTCAACACCACGGTCACCGAGATCGCCGGCTTCCTGGCTGCCAAGTACCCCCAGTACAACGTCAGATGCGATTGCATCGAAGAGCATCACCCCAAGAAGCCGACCATCTCGCTCTCGTCGGGGAAGCTCATCGGCGAAGGGTTCGAGTTCAAGTACAAGAACCTGGACGAGATGTACGACGACCTCGTCGCGTACGGCAAGGCCCTGGGGTTGATCCCCAACTGATGGTGATGATGGGCGGCGTAATTCCACTGCTTTGGCGATTACGACCAAACGTGTGTTGCTTTCAAAAATACTATTGTGTCTAGCATTCTATTGCTAGATTGCTAGTAGTACTAGTACCAAGTTCCAATCAATAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5546#0 GCTCTCCGGGATTTGTCCTGGCAAGTGCCACAACAGCGCAATCAGCAAAAGAAACCTCAT 60 consensus_5546#1 ------------------------------------------------------------ consensus_5546#0 CATCAGTGTGCTGCTCGGATTCTACCTGGGAGTAAACCCAAGTCACCTTCTCTGTCACAG 120 consensus_5546#1 ------------------------------------------------------------ consensus_5546#0 GAGAGGTATTAACTGACCGGAGAGAGAGAGAGAGACGATGTCGTCGGAGGTTGAGAGGAA 180 consensus_5546#1 ------------------------------------------------------------ consensus_5546#0 GACGGTGTGCGTCACCGGCGGCAACGGGTACGTTGCTTCATTGCTCGTCAAGATGCTCCT 240 consensus_5546#1 ------------------------------------------------------------ consensus_5546#0 GGAGAAAGGATACGCTGTTCAGACAAGCGTCAGAGATCCCAATAACCCGGAGAAGGTCTC 300 consensus_5546#1 ------------------------------------------------------------ consensus_5546#0 CCATTTCAAGGACATGGAAAAACTCGGCCCCCTGAAGGTCTTTCGCGCCAACTTGGAGGA 360 consensus_5546#1 ------------------------------------------------------------ consensus_5546#0 TGAAGGCAGCTTCGACGAGGCCGTCGCCGGCTGCCACTACGCCTTCCTCGTCGCCGCTCC 420 consensus_5546#1 ------------------------------------------------------------ consensus_5546#0 GGTGTACGACAAGAGCCACAAGTCCGACGATCTCGAGAAAGAGATAGTCCAAGGCGGCGT 480 consensus_5546#1 ------------------------------------------------------------ consensus_5546#0 CGAGGGCACACTGAACGTGATGAGGTCGTGCGCGAGAGCCGGCACGGTGAAGCGCGTGAT 540 consensus_5546#1 ------------------------------------------------------------ consensus_5546#0 CCTGACGTCGTCGACGGCCGCCGTCTCCAGCCTGCGGCCGCTGGAAGGCGCCGGCCATGT 600 consensus_5546#1 ------------------------------------------------------------ consensus_5546#0 CCTCGACGAGTCGTCCTGGTCCGACATCGAGTACCTCAGATCCATGGAGAAGCTGTCGCC 660 consensus_5546#1 ----------------------------------------------GAGAAGCTGTCGCC 14 ************** consensus_5546#0 GACGCAGGCGTACTCGATCTCCAAGGTTCTTTCGGAGAAGGAGGCGACCAAGTTCGCGGA 720 consensus_5546#1 GACGCAGGCGTACTCGATCTCCAAGGTTCTTTCGGAGAAGGAGGCGACCAAGTTCGCGGA 74 ************************************************************ consensus_5546#0 GGAGAACGGTCTCAGCCTGGTGACCCTCTGCCCGGTCGTCGCCGTCGGAGCATCGCCGGC 780 consensus_5546#1 GGAGAACGGTCTCAGCCTGGTGACCCTCTGCCCGGTCGTCGCCGTCGGAGCATCGCCGGC 134 ************************************************************ consensus_5546#0 GGTGAGGGTCGATACCAGCGTCCCGGCCTGCCTCTCGTTGATAACCGGCGACGAGGAGAT 840 consensus_5546#1 GGTGAGGGTCGATACCAGCGTCCCGGCCTGCCTCTCGTTGATAACCGGCGACGAGGAGAT 194 ************************************************************ consensus_5546#0 GATGAACATCCTCAAGGGCATCGAGAAGGCGTCCGGGTGGTCGATGCCGATGGTCCACAT 900 consensus_5546#1 GATGAACATCCTCAAGGGCATCGAGAAGGCGTCCGGGTGGTCGATGCCGATGGTCCACAT 254 ************************************************************ consensus_5546#0 CGAGGACGTGTGCCGCGCCGAGATCTTCGTCGCCGAGGAGGAGTCGGCGTCGGGGAGGTA 960 consensus_5546#1 CGAGGACGTGTGCCGCGCCGAGATCTTCGTCGCCGAGGAGGAGTCGGCGTCGGGGAGGTA 314 ************************************************************ consensus_5546#0 CATCTGCGGCAGCCTCAACACCACGGTCACCGAGATCGCCGGCTTCCTGGCGGCCAAGTA 1020 consensus_5546#1 CATCTGCGGCAGCCTCAACACCACGGTCACCGAGATCGCCGGCTTCCTGGCTGCCAAGTA 374 *************************************************** ******** consensus_5546#0 CCCCCAGTACAACGTCAGATGCGATTGCATCGAAGAGCATCACCCCGAGAAGCCGACCAT 1080 consensus_5546#1 CCCCCAGTACAACGTCAGATGCGATTGCATCGAAGAGCATCACCCCAAGAAGCCGACCAT 434 ********************************************** ************* consensus_5546#0 CTCGCTCTCGTCGGCGAAGCTCATCGGCGAAGGGTTCGAGTTCAAGTACAAGAACCTGGA 1140 consensus_5546#1 CTCGCTCTCGTCGGGGAAGCTCATCGGCGAAGGGTTCGAGTTCAAGTACAAGAACCTGGA 494 ************** ********************************************* consensus_5546#0 CGAGATGTACGACGACCTCGTCGCGTACGGCAAGGCCCTGGGGTTGATCCCCAACTGATG 1200 consensus_5546#1 CGAGATGTACGACGACCTCGTCGCGTACGGCAAGGCCCTGGGGTTGATCCCCAACTGATG 554 ************************************************************ consensus_5546#0 GTGATGATGGGCGGCGTAATTCCACTGCTTTGGCGATTACGACCAAACGTGTGTTGCTTT 1260 consensus_5546#1 GTGATGATGGGCGGCGTAATTCCACTGCTTTGGCGATTACGACCAAACGTGTGTTGCTTT 614 ************************************************************ consensus_5546#0 CAAAAATACTATTGTGTCTAGCATTCTATTGCTACATTGCTAGTAGTACTAGTACCAAGT 1320 consensus_5546#1 CAAAAATACTATTGTGTCTAGCATTCTATTGCTAGATTGCTAGTAGTACTAGTACCAAGT 674 ********************************** ************************* consensus_5546#0 TCCAATACATTTGGCGGTTTGGCTGTACTTCGTTCTGTTCATGTAAGAGGAGGATTGAGA 1380 consensus_5546#1 TCCAAT-CAATAAAAGA------------------------------------------- 690 ****** ** * * consensus_5546#0 ATTTGAGATCCTCTTAGGGG 1400 consensus_5546#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||