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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 990 fasta sequence
[AAATTCTCCGGTCACGCCGGCTCTCTCCCCTCCTCTCTCCGCCAGCGCCGGCTCCCCTCCTCCCTCCACCGGCGACGGCTCTCCTCTCCTCCGGCGAAGGACGGCGACGAACTTGGAGAAGCGGGGCAGAGCGCGGGGCGGGAGATGGCGACAAGTTCGGTGGCGGCGGCGCGAGATCTCACCGGCCCCTCCACTTCTGGCCAGTGACGAGGGCGCGGAGGGCTGCGGCGGCGCGAGGGCTCACCGGGCCCCTCCACCCCCGGCAGTGTCTCGACGACGGATCTGGCGTCGGGCGAGCGGCATCCTCGGGGCCTAGCGAACAAACGGCGGCGGCGCGTCCTCGCCCCGCCCTCCTCACCAGCGGCGGCGCCCTCCTTAGCCTCCACCGGAGCTCGACGGCGCCGCCCGAACCTTGCCAGGCGTGGATCTGGCCTAGAGCTTGACGGCGCCGCTCGGACCTCGCCCGGCGCGGGGTGGCGCCGCCGGACATGGAGCTCTGGCGGCGGCGGAAGAATCCGAGCTCGGCATGGCATCCTCCTCCCCCGGCTTTGTTTCAACTTTTTCAGAATCCGAGCTCTGCACATGTGTTTGTTTCAGCTTTTTGAAGCGTTTGTTTCAGCCTTTTCAAGCGAGTTCCTTGCATCCTTGTTAAGGGACGAAAGCCTCAGCGAAGGAACGAGGGCCCACATCCTCTCTCCTCAACAACATCACACAACCTATGTGTAGGGGTGAAGCAACCCGCCACGGTGGTGCACTGTGAAGGGTAGAGTGGAGCTGTTGCATGCTCCGCTCTTAGAAATTAGATTACGACTTTACGAGTATAAAGCTCCGCATCATCCTCAAAGCAGGCGCCGGGAGGTATACCAAACAGGTCTTAATCATTCGTTTTAGTTGGAACTGGAAGTGCATGGTTTGGACCATGCTAATGTCTCTGGCAATATTGCTCTGCAACAATTAACCAATGATGATGTTCATCTTTGTACTGAACTC]
[+] EMBL AK063018 [AAATTCTCCGGTCACGCCGGCTCTCTCCCCTCCTCTCTCCGCCAGCGCCGGCTCCCCTCCTCCCTCCACCGGCGACGGCTCTCCTCTCCTCCGGCGAAGGACGGCGACGAACTTGGAGAAGCGGGGCAGAGCGCGGGGCGGGAGATGGCGACAAGTTCGGTGGCGGCGGCGCGAGATCTCACCGGCCCCTCCACTTCTGGCCAGTGACGAGGGCGCGGAGGGCTGCGGCGGCGCGAGGGCTCACCGGGCCCCTCCACCCCCGGCAGTGTCTCGACGACGGATCTGGCGTCGGGCGAGCGGCATCCTCGGGGCCTAGCGAACAAACGGCGGCGGCGCGTCCTCGCCCCGCCCTCCTCACCAGCGGCGGCGCCCTCCTTAGCCTCCACCGGAGCTCGACGGCGCCGCCCGAACCTTGCCAGGCGTGGATCTGGCCTAGAGCTTGACGGCGCCGCTCGGACCTCGCCCGGCGCGGGGTGGCGCCGCCGGACATGGAGCTCTGGCGGCGGCGGAAGAATCCGAGCTCGGCATGGCATCCTCCTCCCCCGGCTTTGTTTCAACTTTTTCAGAATCCGAGCTCTGCACATGTGTTTGTTTCAGCTTTTTGAAGCGTTTGTTTCAGCCTTTTCAAGCGAGTTCCTTGCATCCTTGTTAAGGGACGAAAGCCTCAGCGAAGGAACGAGGGCCCACATCCTCTCTCCTCAACAACATCACACAACCTATGTGTAGGGGTGAAGCAACCCGCCACGGTGGTGCACTGTGAAGGGTAGAGTGGAGCTGTTGCATGCTCCGCTCTTAGAAATTAGATTACGACTTTACGAGTATAAAGCTCCGCATCATCCTCAAAGCAGGCGCCGGGAGGTATACCAAACAGGTCTTAATCATTCGTTTTAGTTGGAACTGGAAGTGCATGGTTTGGACCATGCTAATGTCTCTGGCAATATTGCTCTGCAACAATTAACCAATGATGATGTTCATCTTTGTACTGAACTC]
consensusID : consensus_5547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 976 fasta sequence
[CCTCACGTGTTTATCAATTTACAAAGAAGTCCAAATTTTACAGTAACCACCCTAAAATCGAGAGAAGAATATAAATCTCCACCCATACTACTTTACCCAAATCCCCCAACTACTCCTCCCTCACGGTCACGCCGGCTCTCTCCCCTCCTCTCTCCGCCGGCGCTGGCTCCCCTCCTCTCCTCCGCCGGCGCCGGCTCTCCTCTCCTCCAGCGAAGGACGGCGACGAACTCGACGAAGCGGGTTAGAGCGCGGGGCGGGAGACGGCGACGCGGGGGCACAGGAGTGGGAGATGGTGACGAGTTCGGCGGCGGCGGCGCGAGATCTCACCGGCCCCTCCACTTCTGGCCGGCGATGAGGGCGCGGAGGGCTGCGGCGACGCGAGGGCTCACCGGGCCCCTCCACCCCCGGCAGTGTCTCGACGACGGATCCGGCGTCGGGCGAGCGGCATCCTCGGGGCTTGGCGTAGAAGCAACGGTGGGAAGACGGCGGCGACAGCGCTCCTTCGAGGTGGTGGCGGCGGCGTGGATCTGAAGCGGTGCGGGAGCTTAGCCTCCACCGGAGCTCGACGGCGCCGCCCGAACCTTGTCCGGCGTGGATCCGGCCTAGAGCTCGATGGCGCCGCCCGGACCTCGCCCGGCGCGGGGTGGCGCCGCCGGACATGGAGCTCTAGCGGCGGCGGAAGAATCCGAGCTCGGCATGGCATCCTTCTCCCCCGGCTTTGTTTCAACCTTTTCAGAATCGGAGCTCTTCACATGTGTTTATTTTAGCTTTTTGAAGTGTTTGTTTCAGCTTTTTCAAGCGAGTTCCTCGCGTCCTTGTTAAGGGACGAAAGCCTCAGCGAAGGAACGAGGGCCCACACCCTCTCTCCTCTACAACATCAAACAGCCTATGTGGAGGGGTGAAGCAACCCGCCATGTTGGTACACTGTGAAGGGCCTTAGAGGGACACTACTACATAACTCTAATTCAGTTCTGGT]
[-] EMBL AK107782 [CCTCACGTGTTTATCAATTTACAAAGAAGTCCAAATTTTACAGTAACCACCCTAAAATCGAGAGAAGAATATAAATCTCCACCCATACTACTTTACCCAAATCCCCCAACTACTCCTCCCTCACGGTCACGCCGGCTCTCTCCCCTCCTCTCTCCGCCGGCGCTGGCTCCCCTCCTCTCCTCCGCCGGCGCCGGCTCTCCTCTCCTCCAGCGAAGGACGGCGACGAACTCGACGAAGCGGGTTAGAGCGCGGGGCGGGAGACGGCGACGCGGGGGCACAGGAGTGGGAGATGGTGACGAGTTCGGCGGCGGCGGCGCGAGATCTCACCGGCCCCTCCACTTCTGGCCGGCGATGAGGGCGCGGAGGGCTGCGGCGACGCGAGGGCTCACCGGGCCCCTCCACCCCCGGCAGTGTCTCGACGACGGATCCGGCGTCGGGCGAGCGGCATCCTCGGGGCTTGGCGTAGAAGCAACGGTGGGAAGACGGCGGCGACAGCGCTCCTTCGAGGTGGTGGCGGCGGCGTGGATCTGAAGCGGTGCGGGAGCTTAGCCTCCACCGGAGCTCGACGGCGCCGCCCGAACCTTGTCCGGCGTGGATCCGGCCTAGAGCTCGATGGCGCCGCCCGGACCTCGCCCGGCGCGGGGTGGCGCCGCCGGACATGGAGCTCTAGCGGCGGCGGAAGAATCCGAGCTCGGCATGGCATCCTTCTCCCCCGGCTTTGTTTCAACCTTTTCAGAATCGGAGCTCTTCACATGTGTTTATTTTAGCTTTTTGAAGT ]
[+] EMBL AK063711 [ CCGGCTCTCTCCCCTCCTCTCTCCGCCGGCGCTGGCTCCCCTCCTCTCCTCCGCCGGCGCCGGCTCTCCTCTCCTCCAGCGAAGGACGGCGACGAACTCGACGAAGCGGGTTAGAGCGCGGGGCGGGAGACGGCGACGCGGGGGCACAGGAGTGGGAGATGGTGACGAGTTCGGCGGCGGCGGCGCGAGATCTCACCGGCCCCTCCACTTCTGGCCGGCGATGAGGGCGCGGAGGGCTGCGGCGACGCGAGGGCTCACCGGGCCCCTCCACCCCCGGCAGTGTCTCGACGACGGATCCGGCGTCGGGCGAGCGGCATCCTCGGGGCTTGGCGTAGAAGCAACGGTGGGAAGACGGCGGCGACAGCGCTCCTTCGAGGTGGTGGCGGCGGCGTGGATCTGAAGCGGTGCGGGAGCTTAGCCTCCACCGGAGCTCGACGGCGCCGCCCGAACCTTGTCCGGCGTGGATCCGGCCTAGAGCTCGATGGCGCCGCCCGGACCTCGCCCGGCGCGGGGTGGCGCCGCCGGACATGGAGCTCTAGCGGCGGCGGAAGAATCCGAGCTCGGCATGGCATCCTTCTCCCCCGGCTTTGTTTCAACCTTTTCAGAATCGGAGCTCTTCACATGTGTTTATTTTAGCTTTTTGAAGTGTTTGTTTCAGCTTTTTCAAGCGAGTTCCTCGCGTCCTTGTTAAGGGACGAAAGCCTCAGCGAAGGAACGAGGGCCCACACCCTCTCTCCTCTACAACATCAAACAGCCTATGTGGAGGGGTGAAGCAACCCGCCATGTTGGTACACTGTGAAGGGCCTTAGAGGGACACTACTACATAACTCTAATTCAGTTCTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5547#0 ------------------------------------------------------------
consensus_5547#1 CCTCACGTGTTTATCAATTTACAAAGAAGTCCAAATTTTACAGTAACCACCCTAAAATCG 60
consensus_5547#0 --------------------------------------------------AAATTCTCC- 9
consensus_5547#1 AGAGAAGAATATAAATCTCCACCCATACTACTTTACCCAAATCCCCCAACTACTCCTCCC 120
* * ****
consensus_5547#0 ----GGTCACGCCGGCTCTCTCCCCTCCTCTCTCCGCCAGCGCCGGCTCCCCTCCTC-CC 64
consensus_5547#1 TCACGGTCACGCCGGCTCTCTCCCCTCCTCTCTCCGCCGGCGCTGGCTCCCCTCCTCTCC 180
********************************** **** ************* **
consensus_5547#0 TCCACCGGCGACGGCTCTCCTCTCCTCCGGCGAAGGACGGCGACGAACTTGGAGAAGCGG 124
consensus_5547#1 TCCGCCGGCGCCGGCTCTCCTCTCCTCCAGCGAAGGACGGCGACGAACTCGACGAAGCGG 240
*** ****** ***************** ******************** * *******
consensus_5547#0 GGCAGAGCGCGGGGCGGGAGATGGCGACA-----------------------------AG 155
consensus_5547#1 GTTAGAGCGCGGGGCGGGAGACGGCGACGCGGGGGCACAGGAGTGGGAGATGGTGACGAG 300
* ****************** ****** **
consensus_5547#0 TTCGGTGGCGGCGGCGCGAGATCTCACCGGCCCCTCCACTTCTGGCCAGTGACGAGGGCG 215
consensus_5547#1 TTCGGCGGCGGCGGCGCGAGATCTCACCGGCCCCTCCACTTCTGGCCGGCGATGAGGGCG 360
***** ***************************************** * ** *******
consensus_5547#0 CGGAGGGCTGCGGCGGCGCGAGGGCTCACCGGGCCCCTCCACCCCCGGCAGTGTCTCGAC 275
consensus_5547#1 CGGAGGGCTGCGGCGACGCGAGGGCTCACCGGGCCCCTCCACCCCCGGCAGTGTCTCGAC 420
*************** ********************************************
consensus_5547#0 GACGGATCTGGCGTCGGGCGAGCGGCATCCTCGGGGCCTAGCGAACAAACGGCGGCGGCG 335
consensus_5547#1 GACGGATCCGGCGTCGGGCGAGCGGCATCCTCGGGGCTTGGCGTAGAAGCAACGGTGGGA 480
******** **************************** * *** * ** * *** **
consensus_5547#0 CGTCCTCGCC--CCGCCCTCCTCACCAGCGGCGGCGCCCTC------------------- 374
consensus_5547#1 AGACGGCGGCGACAGCGCTCCTTCGAGGTGGTGGCGGCGGCGTGGATCTGAAGCGGTGCG 540
* * ** * * ** ***** * ** **** * *
consensus_5547#0 ----CTTAGCCTCCACCGGAGCTCGACGGCGCCGCCCGAACCTTGCCAGGCGTGGATCTG 430
consensus_5547#1 GGAGCTTAGCCTCCACCGGAGCTCGACGGCGCCGCCCGAACCTTGTCCGGCGTGGATCCG 600
***************************************** * ********** *
consensus_5547#0 GCCTAGAGCTTGACGGCGCCGCTCGGACCTCGCCCGGCGCGGGGTGGCGCCGCCGGACAT 490
consensus_5547#1 GCCTAGAGCTCGATGGCGCCGCCCGGACCTCGCCCGGCGCGGGGTGGCGCCGCCGGACAT 660
********** ** ******** *************************************
consensus_5547#0 GGAGCTCTGGCGGCGGCGGAAGAATCCGAGCTCGGCATGGCATCCTCCTCCCCCGGCTTT 550
consensus_5547#1 GGAGCTCTAGCGGCGGCGGAAGAATCCGAGCTCGGCATGGCATCCTTCTCCCCCGGCTTT 720
******** ************************************* *************
consensus_5547#0 GTTTCAACTTTTTCAGAATCCGAGCTCTGCACATGTGTTTGTTTCAGCTTTTTGAAGCGT 610
consensus_5547#1 GTTTCAACCTTTTCAGAATCGGAGCTCTTCACATGTGTTTATTTTAGCTTTTTGAAGTGT 780
******** *********** ******* *********** *** ************ **
consensus_5547#0 TTGTTTCAGCCTTTTCAAGCGAGTTCCTTGCATCCTTGTTAAGGGACGAAAGCCTCAGCG 670
consensus_5547#1 TTGTTTCAGCTTTTTCAAGCGAGTTCCTCGCGTCCTTGTTAAGGGACGAAAGCCTCAGCG 840
********** ***************** ** ****************************
consensus_5547#0 AAGGAACGAGGGCCCACATCCTCTCTCCTCAACAACATCACACAACCTATGTGTAGGGGT 730
consensus_5547#1 AAGGAACGAGGGCCCACACCCTCTCTCCTCTACAACATCAAACAGCCTATGTGGAGGGGT 900
****************** *********** ********* *** ******** ******
consensus_5547#0 GAAGCAACCCGCCACGGTGGTGCACTGTGAAGGG---TAGAGTGGAGCTGTTGCATGCTC 787
consensus_5547#1 GAAGCAACCCGCCATGTTGGTACACTGTGAAGGGCCTTAGAGGGACACTACTACATA--- 957
************** * **** ************ ***** * ** * ***
consensus_5547#0 CGCTCTTAGAAATTAGATTACGACTTTACGAGTATAAAGCTCCGCATCATCCTCAAAGCA 847
consensus_5547#1 -ACTCT----AATTCAGTTCTGGT------------------------------------ 976
**** **** ** *
consensus_5547#0 GGCGCCGGGAGGTATACCAAACAGGTCTTAATCATTCGTTTTAGTTGGAACTGGAAGTGC 907
consensus_5547#1 ------------------------------------------------------------
consensus_5547#0 ATGGTTTGGACCATGCTAATGTCTCTGGCAATATTGCTCTGCAACAATTAACCAATGATG 967
consensus_5547#1 ------------------------------------------------------------
consensus_5547#0 ATGTTCATCTTTGTACTGAACTC 990
consensus_5547#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||