cluster # 5548

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Oryza sativa
cluster # 5548 cluster # 5548 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5548#0 length = 551 sequences # 1

consensus_5548#1 length = 329 sequences # 2

consensusID : consensus_5548#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [TACGGGGACTACTGGTTCCCCTCGCCTCGCGGCGGGGCGCGGCCGCGGCGGCAATGGCGCATCAAATTAGGGTTTCGCTCTCACCCTCTTCCTCCTTCTCGGCCCCCACCCGGCGCGGCTCGCAAGGTGCACATGCCCACTGATATTGGAGGAACATAGATGGTGAGGATAATGGAGTACATGAAGAATAAAGTGGGTGACAAGTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTTTGAGTCCAAAGCACAATGGTGTCGCGACTCGTGTACAAATGGTGCATATCATATGGTGGGGGTGGTGATGCCGATTGAAAGCAGTGTGGCAAGTTCGATGCGGACATCTAGTACGGCAGCGATTTTTCTTTTTCAAGATAGGCACGCCACCGTGCTAGCTTCCTCCCCTCTCCCCTTAGCAGAATCATGCATTTCGTACCGTCCTTGATGACTTCTCTTATTCTGCTGCTTAAGCTCTGCTTTGCCATATGCTTTATAGCCTGCTAGAATTTGATACCTTGAGATTTTTCAGAATAAAGATTTGCAAGACG]

[+] EMBL AK108095             [TACGGGGACTACTGGTTCCCCTCGCCTCGCGGCGGGGCGCGGCCGCGGCGGCAATGGCGCATCAAATTAGGGTTTCGCTCTCACCCTCTTCCTCCTTCTCGGCCCCCACCCGGCGCGGCTCGCAAGGTGCACATGCCCACTGATATTGGAGGAACATAGATGGTGAGGATAATGGAGTACATGAAGAATAAAGTGGGTGACAAGTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTTTGAGTCCAAAGCACAATGGTGTCGCGACTCGTGTACAAATGGTGCATATCATATGGTGGGGGTGGTGATGCCGATTGAAAGCAGTGTGGCAAGTTCGATGCGGACATCTAGTACGGCAGCGATTTTTCTTTTTCAAGATAGGCACGCCACCGTGCTAGCTTCCTCCCCTCTCCCCTTAGCAGAATCATGCATTTCGTACCGTCCTTGATGACTTCTCTTATTCTGCTGCTTAAGCTCTGCTTTGCCATATGCTTTATAGCCTGCTAGAATTTGATACCTTGAGATTTTTCAGAATAAAGATTTGCAAGACG]




>consensus_5548#0
TACGGGGACTACTGGTTCCCCTCGCCTCGCGGCGGGGCGCGGCCGCGGCGGCAATGGCGC
ATCAAATTAGGGTTTCGCTCTCACCCTCTTCCTCCTTCTCGGCCCCCACCCGGCGCGGCT
CGCAAGGTGCACATGCCCACTGATATTGGAGGAACATAGATGGTGAGGATAATGGAGTAC
ATGAAGAATAAAGTGGGTGACAAGTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTT
TGAGTCCAAAGCACAATGGTGTCGCGACTCGTGTACAAATGGTGCATATCATATGGTGGG
GGTGGTGATGCCGATTGAAAGCAGTGTGGCAAGTTCGATGCGGACATCTAGTACGGCAGC
GATTTTTCTTTTTCAAGATAGGCACGCCACCGTGCTAGCTTCCTCCCCTCTCCCCTTAGC
AGAATCATGCATTTCGTACCGTCCTTGATGACTTCTCTTATTCTGCTGCTTAAGCTCTGC
TTTGCCATATGCTTTATAGCCTGCTAGAATTTGATACCTTGAGATTTTTCAGAATAAAGA
TTTGCAAGACG

consensusID : consensus_5548#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 329
fasta sequence

                              [GTGGGTGACAAGTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTTTGAGTCCAAAGCACAATGGTGAGGATAATGACGNACAATATAATCAGACTGTTGCTTATATTTGTTTTTTTGTACTTGTTATGATGCTCCCAAGAATGATGGGGTCATGTCCATCATTTTCCCTTGTTATTTGCATAATTACAGGGAGACTGTTCCTTGATTTGCTAACAAAAATAACTGTTGTTACAGTTTATTTGGCAGGCTAATCGTGATACATGTTTAACTTTTATGACGAAGACAGGAAATAAAGTAGTACAAAAACTTTCATAAAAAAAAAAAAA]

[+] EMBL AU033251             [GTGGGTGACAAGTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTTTGAGTCCAAAGCACAATGGTGAGGATAATGACGNACAATATAATCAGACTGTTGCTTATATTTGTTTTTTTGTACTTGTTATGATGCTCCCAAGAATGATGGGGTCATGTCCATCATTTTCCCTTGTTATTTGCATAATTACAGGGAGACTGTTCCTTGATTTGCTAACAAAAATAACTGTTGTTACAGTTTATTTGGCAGGCTAATCGTGATACATGTTTAACTTTTATGACGAAGACAGGAAATAAAGTAGTACAAAAACTTTCATAAAAAAAAAAAAA]
[+] EMBL AA749631             [                                                                                             AGACTGTTGCTTATATTTGTTTTTTTGTACTTGTTATGATGCTCCCAAGAATGATGGGGTCATGTCCATCATTTTCCCTTGTTATTTGCATAATTACAGGGAGACTGTTCCTTGATTTGCTAACAAAAATAACTGTTGTTACAGTTTATTTGGCAGGCTAATCGTGATACATGTTTAAC TTTATGA                                                 ]




>consensus_5548#1
GTGGGTGACAAGTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTTTGAGTCCAAAGC
ACAATGGTGAGGATAATGACGNACAATATAATCAGACTGTTGCTTATATTTGTTTTTTTG
TACTTGTTATGATGCTCCCAAGAATGATGGGGTCATGTCCATCATTTTCCCTTGTTATTT
GCATAATTACAGGGAGACTGTTCCTTGATTTGCTAACAAAAATAACTGTTGTTACAGTTT
ATTTGGCAGGCTAATCGTGATACATGTTTAACTTTTATGACGAAGACAGGAAATAAAGTA
GTACAAAAACTTTCATAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5548#0      TACGGGGACTACTGGTTCCCCTCGCCTCGCGGCGGGGCGCGGCCGCGGCGGCAATGGCGC 60
consensus_5548#1      ------------------------------------------------------------
                                                                                  

consensus_5548#0      ATCAAATTAGGGTTTCGCTCTCACCCTCTTCCTCCTTCTCGGCCCCCACCCGGCGCGGCT 120
consensus_5548#1      ------------------------------------------------------------
                                                                                  

consensus_5548#0      CGCAAGGTGCACATGCCCACTGATATTGGAGGAACATAGATGGTGAGGATAATGGAGTAC 180
consensus_5548#1      ------------------------------------------------------------
                                                                                  

consensus_5548#0      ATGAAGAATAAAGTGGGTGACAAGTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTT 240
consensus_5548#1      ------------GTGGGTGACAAGTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTT 48
                                  ************************************************

consensus_5548#0      TGAGTCCAAAGCACAATGGTGTCGCGACTCGTGTACAAATGGTGCATATCATATGGTGGG 300
consensus_5548#1      TGAGTCCAAAGCACAATGGTGAGGATAATGACGNACAATATAATCAGACTGTTGCTTATA 108
                      *********************  *  * *   * ****      ** *   *    *   

consensus_5548#0      GGTGGTGATGCCGATTGAAAGCAGTG-TGGCAAGTTCGATGCGGACATCTAGTACGGCAG 359
consensus_5548#1      TTTGTTTTTTTGTACTTGTTATGATGCTCCCAAGAATGATGGGGTCATGT-------CCA 161
                        ** *  *    * *        ** *  ****   **** ** *** *       *  

consensus_5548#0      CGATTTTTCTTTTTCAAGATAGGCACGCCACCGTGCTAGCTTCCTCCCCTCTCCCCTTAG 419
consensus_5548#1      TCATTTTCCCTTGTTA---TTTGCATAATTACAGGG-AGACTGTTCCTTGATTTGCTAAC 217
                        ***** * ** * *   *  ***      *  *  **  *  ***    *   ** * 

consensus_5548#0      CAGAATCATGCATTTCGTACCGTCCTTGATGACTTCTCTTATTCTGCTGCTTAAGCTCTG 479
consensus_5548#1      AAAAATAACTGTTGTTACAGTTTATTTGGCAG----GCTAATCGTGATACAT--GTTTAA 271
                       * *** *    * *   *   *  ***         ** **  ** * * *  * *   

consensus_5548#0      CTTTGCCATATGCTTTATAGCCTGCTAGAATTTGATACCTTGAGATTTTTCAGAATAAAG 539
consensus_5548#1      CTTT----TATGA--CGAAGACAG--GAAATAAAGTAGTACAAAAACTTTCATAAAAAAA 323
                      ****    ****      ** * *    ***    **     * *  ***** ** *** 

consensus_5548#0      ATTTGCAAGACG 551
consensus_5548#1      AA----AAAA-- 329
                      *     ** *