These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5549#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 998 fasta sequence [TTGTTCGTTTGATCGTACTAAAATTAGTATTTTCCTTTCTCAGGCATAACTGAACTTTTTGTTAGTTTGATCTTACTAAAATTGGAGGCAAATCCAACACCCATGCACAAAAATAAATAAATTAATTTTAAAGAATATATGAGACAACATCATAGTTTTCAGTTTGTTGTTTTCTTAGGAAAAAAAATACATGTATGAAGAATCTGAATTCTGATATAATGCTACTACTAGAGCCTGGAGAAACTCTAGCCATATTCTAATTCTTCTTTCTTTCTCTTTTTTTTTTTACATCCTTCAAATTGTCATAGTTCGATTTCCATGAGCCTGTAAGCATTGGAGGCGACGAAATGGCAGTTGGTAGAGCATAAGCATGAACAGTGGCAGACATATAAAATTTGTCCTAATGAATTTTCCTACTACAGTTTTAAAACAATCGATATTTGACAAAATATTTATGTGTTCCATCTTGCATATTAGAACAAGCTATTTGATCCATTTGTGTTCTCCATTTTATTGAAATTCAGGGTATCGTTGGTGAGGTGTAACTTGCCAAGGACTGCATCTTCATCATTGCCTGGGTGTCCACCTCGCTGATCTCGTCCACGCCACCATAACTCCATCAGCAAGCCTCACTGATCTGCTCCGCTTCGCCTCCGGGACTCCATCCCCTGCTTCTCTGATCTGGGACGCCGACGAGCCATGGACTCCTGCATCGAAGCACTGCCACCTCCTCCGCCTTGAGCATCACTGTCGCCATGAGGTCATTGAATGCCCATGCCCCCTTTTGCAAATACCTACTTGTTTTTCAAGTTTATGTTGAATGAAGCTATCAGTTCTCTTTCTGTTCGATTTGCCACCACTATTTGATAACCTAGGAATGGCAGGTAATGCCAATGCTCCCAGGTTGCATTGCTCTGTTTTTTTCCTAGAAGATAGAGTATTATATGTTGCTTCACTGAAATAGTAGGTCTGGCCATTATTACCATGCACCCGCTCAA] [+] EMBL AK111409 [TTGTTCGTTTGATCGTACTAAAATTAGTATTTTCCTTTCTCAGGCATAACTGAACTTTTTGTTAGTTTGATCTTACTAAAATTGGAGGCAAATCCAACACCCATGCACAAAAATAAATAAATTAATTTTAAAGAATATATGAGACAACATCATAGTTTTCAGTTTGTTGTTTTCTTAGGAAAAAAAATACATGTATGAAGAATCTGAATTCTGATATAATGCTACTACTAGAGCCTGGAGAAACTCTAGCCATATTCTAATTCTTCTTTCTTTCTCTTTTTTTTTTTACATCCTTCAAATTGTCATAGTTCGATTTCCATGAGCCTGTAAGCATTGGAGGCGACGAAATGGCAGTTGGTAGAGCATAAGCATGAACAGTGGCAGACATATAAAATTTGTCCTAATGAATTTTCCTACTACAGTTTTAAAACAATCGATATTTGACAAAATATTTATGTGTTCCATCTTGCATATTAGAACAAGCTATTTGATCCATTTGTGTTCTCCATTTTATTGAAATTCAGGGTATCGTTGGTGAGGTGTAACTTGCCAAGGACTGCATCTTCATCATTGCCTGGGTGTCCACCTCGCTGATCTCGTCCACGCCACCATAACTCCATCAGCAAGCCTCACTGATCTGCTCCGCTTCGCCTCCGGGACTCCATCCCCTGCTTCTCTGATCTGGGACGCCGACGAGCCATGGACTCCTGCATCGAAGCACTGCCACCTCCTCCGCCTTGAGCATCACTGTCGCCATGAGGTCATTGAATGCCCATGCCCCCTTTTGCAAATACCTACTTGTTTTTCAAGTTTATGTTGAATGAAGCTATCAGTTCTCTTTCTGTTCGATTTGCCACCACTATTTGATAACCTAGGAATGGCAGGTAATGCCAATGCTCCCAGGTTGCATTGCTCTGTTTTTTTCCTAGAAGATAGAGTATTATATGTTGCTTCACTGAAATAGTAGGTCTGGCCATTATTACCATGCACCCGCTCAA] consensusID : consensus_5549#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [GCAAACATCCNCGGACAGCGGGAGCGAGAGTGTACCAATGGTAGAGAGCACCTTGCAGATGGGATAGATTGATGGGTATAGTTGGTGAGGTGTAGCTTGCCAAGGACTGCATATTCATCATTGCCTGGGTGTCCGCCTCACTGATCTCGTCCGCACCGCCATAACTCCATCAGCAAGCCTCACTGATTTGCTCCGCTTCGCCTCCAGAACTCCATCCCCTGCTTTTCCGATTTGCGACGCCGATGAGCCGTGGACTCCTGAATCGATGCACTACCACCTCCTCCGCCTTGAGGGTCACTGTCGCCATGAGGGTGGTTGTCCAAACCTGATAATGCTTTATAGGCAGCCTATGGCCAGTACGATAACTTTTAAAGCTAGCGGATTTTTTTATAAAAGCCTGAAGCCCATTCTGTCAGCAAAAGGATGATATTGAGCTGGATTTAACAGTTTCAACAGGACTTGACCAAGGGAATGGTACCATGTTATTGGTAAATTTTAATTTCAGGTATTGAATATTTTCTTTGTCCATTGCTTCATATTAATAAGTGGAGTAGTTTCTCTGTATAGATCAATGATCTATTTTTGGAGCTCAAGACAATGAAACCATGTTTTCATGTGAATCCAGTGAATATCCTGGAAGTCATTAGCATGAATTTTGATGCTCCTTATTTTTAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA759062 [GCAAACATCCNCGGACAGCGGGAGCGAGAGTGTACCAATGGTAGAGAGCACCTTGCAGATGGGATAGATTGATGGGTATAGTTGGTGAGGTGTAGCTTGCCAAGGACTGCATATTCATCATTGCCTGGGTGTCCGCCTCACTGATCTCGTCCGCACCGCCATAACTCCATCAGCAAGCCTCACTGATTTGCTCCGCTTCGCCTCCAGAACTCCATCCCCTGCTTTTCCGATTTGCGACGCCGATGAGCCGTGGACTCCTGAATCGATGCACTACCACCTCCTCCGCCTTGAGGGTCACTGTCGCCATGAGGGTGGTTGTCCAAACCTGATAATGCTTTATAGGCAGCCTATGGCCAGTACGATAACTTTTAAAGCTAGCGGATTTTTTTATAAAAGCCTGAAGCCCATTCTGTCAGCAAAAGGATGATATTGAGCTGGATTTAACAGTTTCAACAGGACTTGACCAAGGGAATGGTACCATGTTATTGGTAAATTTTAATTTCAGGTATTGAATATTTTCTTTGTCCATTGCTTCATATTAATAAGTGGAGTAGTTTCTCTGTATAGATCAATGATCTATTTTTGGAGCTCAAGACAATGAAACCATGTTTTCATGTGAATCCAGTGAATATCCTGGAAGTCATTAGCATGAATTTTGATGCTCCTTATTTTTAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_5549#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence [AATGGTAGAGCACCTTGCAGACTGGATAGATTGATGGGTATCGTTGGTGAGGTGCAACTTGCCAAGGACTGCATCTTCATCATTGCCTGGGTGTCCACCTCGCTGATCTCGTCCACGCCACCATAACTCCATCAGCAAGCCTCACTGATCTGCTCCGCTTCGCCTCCGGGACTCCATCCCCTGCTTCTCTGATTTGGGACGCCGACGAGCCATGGACTCCTGCATCGAAGCACTGCCACCTCCTCCGCCTTGAGCATCACTGTCGCCATGAGGTCATTGAATGCCCATGCCCCCTTTTGCAAATACCTACTTGTTTTTCAAGTTTATGTTGAATGAAGCTATCAGTTCTCTTTCTGTTCGATTTGCCACCACTATTTGATAACCTAGGAATGGCAGGTAATGCCAATGCTCCCAGGTTGCATTGCTCTGTTTTTTTCCTAGAAGATAGAGTATTATATGTTGCTTCACTGAAATAGTAGGTCTGGCCATTATTACCATGCACCCGCTCAA] [+] EMBL CB096463 [AATGGTAGAGCACCTTGCAGACTGGATAGATTGATGGGTATCGTTGGTGAGGTGCAACTTGCCAAGGACTGCATCTTCATCATTGCCTGGGTGTCCACCTCGCTGATCTCGTCCACGCCACCATAACTCCATCAGCAAGCCTCACTGATCTGCTCCGCTTCGCCTCCGGGACTCCATCCCCTGCTTCTCTGATTTGGGACGCCGACGAGCCATGGACTCCTGCATCGAAGCACTGCCACCTCCTCCGCCTTGAGCATCACTGTCGCCATGAGGTCATTGAATGCCCATGCCCCCTTTTGCAAATACCTACTTGTTTTTCAAGTTTATGTTGAATGAAGCTATCAGTTCTCTTTCTGTTCGATTTGCCACCACTATTTGATAACCTAGGAATGGCAGGTAATGCCAATGCTCCCAGGTTGCATTGCTCTGTTTTTTTCCTAGAAGATAGAGTATTATATGTTGCTTCACTGAAATAGTAGGTCTGGCCATTATTACCATGCACCCGCTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5549#0 TTGTTCGTTTGATCGTACTAAAATTAGTATTTTCCTTTCTCAGGCATAACTGAACTTTTT 60 consensus_5549#2 ------------------------------------------------------------ consensus_5549#1 ------------------------------------------------------------ consensus_5549#0 GTTAGTTTGATCTTACTAAAATTGGAGGCAAATCCAACACCCATGCACAAAAATAAATAA 120 consensus_5549#2 ------------------------------------------------------------ consensus_5549#1 ------------------------------------------------------------ consensus_5549#0 ATTAATTTTAAAGAATATATGAGACAACATCATAGTTTTCAGTTTGTTGTTTTCTTAGGA 180 consensus_5549#2 ------------------------------------------------------------ consensus_5549#1 ------------------------------------------------------------ consensus_5549#0 AAAAAAATACATGTATGAAGAATCTGAATTCTGATATAATGCTACTACTAGAGCCTGGAG 240 consensus_5549#2 ------------------------------------------------------------ consensus_5549#1 ------------------------------------------------------------ consensus_5549#0 AAACTCTAGCCATATTCTAATTCTTCTTTCTTTCTCTTTTTTTTTTTACATCCTTCAAAT 300 consensus_5549#2 ------------------------------------------------------------ consensus_5549#1 ------------------------------------------------------------ consensus_5549#0 TGTCATAGTTCGATTTCCATGAGCCTGTAAGCATTGGAGGCGACGAAATGGCAGTTGGTA 360 consensus_5549#2 ------------------------------------------------------------ consensus_5549#1 ------------------------------------------------------------ consensus_5549#0 GAGCATAAGCATGAACAGTGGCAGACATATAAAATTTGTCCTAATGAATTTTCCTACTAC 420 consensus_5549#2 ------------------------------------------------------------ consensus_5549#1 ------------------------------------------------------------ consensus_5549#0 AGTTTTAAAACAATCGATATTTGACAAAATATTTATGTGTTCCATCTTGCATATTAGAAC 480 consensus_5549#2 ------------------------------------------------------------ consensus_5549#1 ------------------------GCAAACATCCNCGG-----ACAGCGGGAGCGAGAGT 31 consensus_5549#0 AAGCTATTTGATCCATTTGTGTTCTCCATTTTATTGAAATTCA-GGGTATCGTTGGTGAG 539 consensus_5549#2 ---------AATGGTAGAGCACCTTGCAGACTGGATAGATTGATGGGTATCGTTGGTGAG 51 consensus_5549#1 GTACCAATGG--TAGAGAGCACCTTGCAGATGGGATAGATTGATGGGTATAGTTGGTGAG 89 * * ** * *** * ****** ********* consensus_5549#0 GTGTAACTTGCCAAGGACTGCATCTTCATCATTGCCTGGGTGTCCACCTCGCTGATCTCG 599 consensus_5549#2 GTGCAACTTGCCAAGGACTGCATCTTCATCATTGCCTGGGTGTCCACCTCGCTGATCTCG 111 consensus_5549#1 GTGTAGCTTGCCAAGGACTGCATATTCATCATTGCCTGGGTGTCCGCCTCACTGATCTCG 149 *** * ***************** ********************* **** ********* consensus_5549#0 TCCACGCCACCATAACTCCATCAGCAAGCCTCACTGATCTGCTCCGCTTCGCCTCCGGGA 659 consensus_5549#2 TCCACGCCACCATAACTCCATCAGCAAGCCTCACTGATCTGCTCCGCTTCGCCTCCGGGA 171 consensus_5549#1 TCCGCACCGCCATAACTCCATCAGCAAGCCTCACTGATTTGCTCCGCTTCGCCTCCAGAA 209 *** * ** ***************************** ***************** * * consensus_5549#0 CTCCATCCCCTGCTTCTCTGATCTGGGACGCCGACGAGCCATGGACTCCTGCATCGAAGC 719 consensus_5549#2 CTCCATCCCCTGCTTCTCTGATTTGGGACGCCGACGAGCCATGGACTCCTGCATCGAAGC 231 consensus_5549#1 CTCCATCCCCTGCTTTTCCGATTTGCGACGCCGATGAGCCGTGGACTCCTGAATCGATGC 269 *************** ** *** ** ******** ***** ********** ***** ** consensus_5549#0 ACTGCCACCTCCTCCGCCTTGAGCATCACTGTCGCCATGAGG-TCATTG----------- 767 consensus_5549#2 ACTGCCACCTCCTCCGCCTTGAGCATCACTGTCGCCATGAGG-TCATTG----------- 279 consensus_5549#1 ACTACCACCTCCTCCGCCTTGAGGGTCACTGTCGCCATGAGGGTGGTTGTCCAAACCTGA 329 *** ******************* ***************** * *** consensus_5549#0 -AATGCCC---ATGCCCCCTTTTGCAAATACCTACTTGTTTTTCAAGTTTATG------T 817 consensus_5549#2 -AATGCCC---ATGCCCCCTTTTGCAAATACCTACTTGTTTTTCAAGTTTATG------T 329 consensus_5549#1 TAATGCTTTATAGGCAGCCTATGGCCAGTAC--GATAACTTTTAAAGCTAGCGGATTTTT 387 ***** * ** *** * ** * *** * **** *** * * * consensus_5549#0 TGAATGAAGCTATCAGTTCTCTTTCTGTTCGATTTGCCACCACT-------ATTTGATAA 870 consensus_5549#2 TGAATGAAGCTATCAGTTCTCTTTCTGTTCGATTTGCCACCACT-------ATTTGATAA 382 consensus_5549#1 TTATAAAAGCCTGAAGCCCATTCTGTCAGCAAAAGGATGATATTGAGCTGGATTTAACAG 447 * * **** ** * * * * * * * * * **** * * consensus_5549#0 CCTAGGAATGGCA-GGTAATGCCAATGCTCCCAGGTTGCATTGCTCTGTTTTTTTCCTAG 929 consensus_5549#2 CCTAGGAATGGCA-GGTAATGCCAATGCTCCCAGGTTGCATTGCTCTGTTTTTTTCCTAG 441 consensus_5549#1 TTTCAACAGGACTTGACCAAGGGAATGGTACCATGTT--ATTGGTAAATTTTAATTTCAG 505 * * * * * * * **** * *** *** **** * **** * ** consensus_5549#0 AAGATAGAGTATTATAT------GTTGCTTCACTGAAATAGTAGGTCTGGCCATTATTAC 983 consensus_5549#2 AAGATAGAGTATTATAT------GTTGCTTCACTGAAATAGTAGGTCTGGCCATTATTAC 495 consensus_5549#1 GT-ATTGAATATTTTCTTTGTCCATTGCTTCATATTAATAAGTGGAGTAGTTTCTCTGTA 564 ** ** **** * * ******** **** ** * * * * consensus_5549#0 CATGCACCCGCTCAA--------------------------------------------- 998 consensus_5549#2 CATGCACCCGCTCAA--------------------------------------------- 510 consensus_5549#1 TAGATCAATGATCTATTTTTGGAGCTCAAGACAATGAAACCATGTTTTCATGTGAATCCA 624 * * ** * consensus_5549#0 ------------------------------------------------------------ consensus_5549#2 ------------------------------------------------------------ consensus_5549#1 GTGAATATCCTGGAAGTCATTAGCATGAATTTTGATGCTCCTTATTTTTAAAAAAAAAAA 684 consensus_5549#0 ----------- consensus_5549#2 ----------- consensus_5549#1 AAAAAAAAAAA 695 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||