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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5549#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 998 fasta sequence
[TTGTTCGTTTGATCGTACTAAAATTAGTATTTTCCTTTCTCAGGCATAACTGAACTTTTTGTTAGTTTGATCTTACTAAAATTGGAGGCAAATCCAACACCCATGCACAAAAATAAATAAATTAATTTTAAAGAATATATGAGACAACATCATAGTTTTCAGTTTGTTGTTTTCTTAGGAAAAAAAATACATGTATGAAGAATCTGAATTCTGATATAATGCTACTACTAGAGCCTGGAGAAACTCTAGCCATATTCTAATTCTTCTTTCTTTCTCTTTTTTTTTTTACATCCTTCAAATTGTCATAGTTCGATTTCCATGAGCCTGTAAGCATTGGAGGCGACGAAATGGCAGTTGGTAGAGCATAAGCATGAACAGTGGCAGACATATAAAATTTGTCCTAATGAATTTTCCTACTACAGTTTTAAAACAATCGATATTTGACAAAATATTTATGTGTTCCATCTTGCATATTAGAACAAGCTATTTGATCCATTTGTGTTCTCCATTTTATTGAAATTCAGGGTATCGTTGGTGAGGTGTAACTTGCCAAGGACTGCATCTTCATCATTGCCTGGGTGTCCACCTCGCTGATCTCGTCCACGCCACCATAACTCCATCAGCAAGCCTCACTGATCTGCTCCGCTTCGCCTCCGGGACTCCATCCCCTGCTTCTCTGATCTGGGACGCCGACGAGCCATGGACTCCTGCATCGAAGCACTGCCACCTCCTCCGCCTTGAGCATCACTGTCGCCATGAGGTCATTGAATGCCCATGCCCCCTTTTGCAAATACCTACTTGTTTTTCAAGTTTATGTTGAATGAAGCTATCAGTTCTCTTTCTGTTCGATTTGCCACCACTATTTGATAACCTAGGAATGGCAGGTAATGCCAATGCTCCCAGGTTGCATTGCTCTGTTTTTTTCCTAGAAGATAGAGTATTATATGTTGCTTCACTGAAATAGTAGGTCTGGCCATTATTACCATGCACCCGCTCAA]
[+] EMBL AK111409 [TTGTTCGTTTGATCGTACTAAAATTAGTATTTTCCTTTCTCAGGCATAACTGAACTTTTTGTTAGTTTGATCTTACTAAAATTGGAGGCAAATCCAACACCCATGCACAAAAATAAATAAATTAATTTTAAAGAATATATGAGACAACATCATAGTTTTCAGTTTGTTGTTTTCTTAGGAAAAAAAATACATGTATGAAGAATCTGAATTCTGATATAATGCTACTACTAGAGCCTGGAGAAACTCTAGCCATATTCTAATTCTTCTTTCTTTCTCTTTTTTTTTTTACATCCTTCAAATTGTCATAGTTCGATTTCCATGAGCCTGTAAGCATTGGAGGCGACGAAATGGCAGTTGGTAGAGCATAAGCATGAACAGTGGCAGACATATAAAATTTGTCCTAATGAATTTTCCTACTACAGTTTTAAAACAATCGATATTTGACAAAATATTTATGTGTTCCATCTTGCATATTAGAACAAGCTATTTGATCCATTTGTGTTCTCCATTTTATTGAAATTCAGGGTATCGTTGGTGAGGTGTAACTTGCCAAGGACTGCATCTTCATCATTGCCTGGGTGTCCACCTCGCTGATCTCGTCCACGCCACCATAACTCCATCAGCAAGCCTCACTGATCTGCTCCGCTTCGCCTCCGGGACTCCATCCCCTGCTTCTCTGATCTGGGACGCCGACGAGCCATGGACTCCTGCATCGAAGCACTGCCACCTCCTCCGCCTTGAGCATCACTGTCGCCATGAGGTCATTGAATGCCCATGCCCCCTTTTGCAAATACCTACTTGTTTTTCAAGTTTATGTTGAATGAAGCTATCAGTTCTCTTTCTGTTCGATTTGCCACCACTATTTGATAACCTAGGAATGGCAGGTAATGCCAATGCTCCCAGGTTGCATTGCTCTGTTTTTTTCCTAGAAGATAGAGTATTATATGTTGCTTCACTGAAATAGTAGGTCTGGCCATTATTACCATGCACCCGCTCAA]
consensusID : consensus_5549#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[GCAAACATCCNCGGACAGCGGGAGCGAGAGTGTACCAATGGTAGAGAGCACCTTGCAGATGGGATAGATTGATGGGTATAGTTGGTGAGGTGTAGCTTGCCAAGGACTGCATATTCATCATTGCCTGGGTGTCCGCCTCACTGATCTCGTCCGCACCGCCATAACTCCATCAGCAAGCCTCACTGATTTGCTCCGCTTCGCCTCCAGAACTCCATCCCCTGCTTTTCCGATTTGCGACGCCGATGAGCCGTGGACTCCTGAATCGATGCACTACCACCTCCTCCGCCTTGAGGGTCACTGTCGCCATGAGGGTGGTTGTCCAAACCTGATAATGCTTTATAGGCAGCCTATGGCCAGTACGATAACTTTTAAAGCTAGCGGATTTTTTTATAAAAGCCTGAAGCCCATTCTGTCAGCAAAAGGATGATATTGAGCTGGATTTAACAGTTTCAACAGGACTTGACCAAGGGAATGGTACCATGTTATTGGTAAATTTTAATTTCAGGTATTGAATATTTTCTTTGTCCATTGCTTCATATTAATAAGTGGAGTAGTTTCTCTGTATAGATCAATGATCTATTTTTGGAGCTCAAGACAATGAAACCATGTTTTCATGTGAATCCAGTGAATATCCTGGAAGTCATTAGCATGAATTTTGATGCTCCTTATTTTTAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA759062 [GCAAACATCCNCGGACAGCGGGAGCGAGAGTGTACCAATGGTAGAGAGCACCTTGCAGATGGGATAGATTGATGGGTATAGTTGGTGAGGTGTAGCTTGCCAAGGACTGCATATTCATCATTGCCTGGGTGTCCGCCTCACTGATCTCGTCCGCACCGCCATAACTCCATCAGCAAGCCTCACTGATTTGCTCCGCTTCGCCTCCAGAACTCCATCCCCTGCTTTTCCGATTTGCGACGCCGATGAGCCGTGGACTCCTGAATCGATGCACTACCACCTCCTCCGCCTTGAGGGTCACTGTCGCCATGAGGGTGGTTGTCCAAACCTGATAATGCTTTATAGGCAGCCTATGGCCAGTACGATAACTTTTAAAGCTAGCGGATTTTTTTATAAAAGCCTGAAGCCCATTCTGTCAGCAAAAGGATGATATTGAGCTGGATTTAACAGTTTCAACAGGACTTGACCAAGGGAATGGTACCATGTTATTGGTAAATTTTAATTTCAGGTATTGAATATTTTCTTTGTCCATTGCTTCATATTAATAAGTGGAGTAGTTTCTCTGTATAGATCAATGATCTATTTTTGGAGCTCAAGACAATGAAACCATGTTTTCATGTGAATCCAGTGAATATCCTGGAAGTCATTAGCATGAATTTTGATGCTCCTTATTTTTAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_5549#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence
[AATGGTAGAGCACCTTGCAGACTGGATAGATTGATGGGTATCGTTGGTGAGGTGCAACTTGCCAAGGACTGCATCTTCATCATTGCCTGGGTGTCCACCTCGCTGATCTCGTCCACGCCACCATAACTCCATCAGCAAGCCTCACTGATCTGCTCCGCTTCGCCTCCGGGACTCCATCCCCTGCTTCTCTGATTTGGGACGCCGACGAGCCATGGACTCCTGCATCGAAGCACTGCCACCTCCTCCGCCTTGAGCATCACTGTCGCCATGAGGTCATTGAATGCCCATGCCCCCTTTTGCAAATACCTACTTGTTTTTCAAGTTTATGTTGAATGAAGCTATCAGTTCTCTTTCTGTTCGATTTGCCACCACTATTTGATAACCTAGGAATGGCAGGTAATGCCAATGCTCCCAGGTTGCATTGCTCTGTTTTTTTCCTAGAAGATAGAGTATTATATGTTGCTTCACTGAAATAGTAGGTCTGGCCATTATTACCATGCACCCGCTCAA]
[+] EMBL CB096463 [AATGGTAGAGCACCTTGCAGACTGGATAGATTGATGGGTATCGTTGGTGAGGTGCAACTTGCCAAGGACTGCATCTTCATCATTGCCTGGGTGTCCACCTCGCTGATCTCGTCCACGCCACCATAACTCCATCAGCAAGCCTCACTGATCTGCTCCGCTTCGCCTCCGGGACTCCATCCCCTGCTTCTCTGATTTGGGACGCCGACGAGCCATGGACTCCTGCATCGAAGCACTGCCACCTCCTCCGCCTTGAGCATCACTGTCGCCATGAGGTCATTGAATGCCCATGCCCCCTTTTGCAAATACCTACTTGTTTTTCAAGTTTATGTTGAATGAAGCTATCAGTTCTCTTTCTGTTCGATTTGCCACCACTATTTGATAACCTAGGAATGGCAGGTAATGCCAATGCTCCCAGGTTGCATTGCTCTGTTTTTTTCCTAGAAGATAGAGTATTATATGTTGCTTCACTGAAATAGTAGGTCTGGCCATTATTACCATGCACCCGCTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5549#0 TTGTTCGTTTGATCGTACTAAAATTAGTATTTTCCTTTCTCAGGCATAACTGAACTTTTT 60
consensus_5549#2 ------------------------------------------------------------
consensus_5549#1 ------------------------------------------------------------
consensus_5549#0 GTTAGTTTGATCTTACTAAAATTGGAGGCAAATCCAACACCCATGCACAAAAATAAATAA 120
consensus_5549#2 ------------------------------------------------------------
consensus_5549#1 ------------------------------------------------------------
consensus_5549#0 ATTAATTTTAAAGAATATATGAGACAACATCATAGTTTTCAGTTTGTTGTTTTCTTAGGA 180
consensus_5549#2 ------------------------------------------------------------
consensus_5549#1 ------------------------------------------------------------
consensus_5549#0 AAAAAAATACATGTATGAAGAATCTGAATTCTGATATAATGCTACTACTAGAGCCTGGAG 240
consensus_5549#2 ------------------------------------------------------------
consensus_5549#1 ------------------------------------------------------------
consensus_5549#0 AAACTCTAGCCATATTCTAATTCTTCTTTCTTTCTCTTTTTTTTTTTACATCCTTCAAAT 300
consensus_5549#2 ------------------------------------------------------------
consensus_5549#1 ------------------------------------------------------------
consensus_5549#0 TGTCATAGTTCGATTTCCATGAGCCTGTAAGCATTGGAGGCGACGAAATGGCAGTTGGTA 360
consensus_5549#2 ------------------------------------------------------------
consensus_5549#1 ------------------------------------------------------------
consensus_5549#0 GAGCATAAGCATGAACAGTGGCAGACATATAAAATTTGTCCTAATGAATTTTCCTACTAC 420
consensus_5549#2 ------------------------------------------------------------
consensus_5549#1 ------------------------------------------------------------
consensus_5549#0 AGTTTTAAAACAATCGATATTTGACAAAATATTTATGTGTTCCATCTTGCATATTAGAAC 480
consensus_5549#2 ------------------------------------------------------------
consensus_5549#1 ------------------------GCAAACATCCNCGG-----ACAGCGGGAGCGAGAGT 31
consensus_5549#0 AAGCTATTTGATCCATTTGTGTTCTCCATTTTATTGAAATTCA-GGGTATCGTTGGTGAG 539
consensus_5549#2 ---------AATGGTAGAGCACCTTGCAGACTGGATAGATTGATGGGTATCGTTGGTGAG 51
consensus_5549#1 GTACCAATGG--TAGAGAGCACCTTGCAGATGGGATAGATTGATGGGTATAGTTGGTGAG 89
* * ** * *** * ****** *********
consensus_5549#0 GTGTAACTTGCCAAGGACTGCATCTTCATCATTGCCTGGGTGTCCACCTCGCTGATCTCG 599
consensus_5549#2 GTGCAACTTGCCAAGGACTGCATCTTCATCATTGCCTGGGTGTCCACCTCGCTGATCTCG 111
consensus_5549#1 GTGTAGCTTGCCAAGGACTGCATATTCATCATTGCCTGGGTGTCCGCCTCACTGATCTCG 149
*** * ***************** ********************* **** *********
consensus_5549#0 TCCACGCCACCATAACTCCATCAGCAAGCCTCACTGATCTGCTCCGCTTCGCCTCCGGGA 659
consensus_5549#2 TCCACGCCACCATAACTCCATCAGCAAGCCTCACTGATCTGCTCCGCTTCGCCTCCGGGA 171
consensus_5549#1 TCCGCACCGCCATAACTCCATCAGCAAGCCTCACTGATTTGCTCCGCTTCGCCTCCAGAA 209
*** * ** ***************************** ***************** * *
consensus_5549#0 CTCCATCCCCTGCTTCTCTGATCTGGGACGCCGACGAGCCATGGACTCCTGCATCGAAGC 719
consensus_5549#2 CTCCATCCCCTGCTTCTCTGATTTGGGACGCCGACGAGCCATGGACTCCTGCATCGAAGC 231
consensus_5549#1 CTCCATCCCCTGCTTTTCCGATTTGCGACGCCGATGAGCCGTGGACTCCTGAATCGATGC 269
*************** ** *** ** ******** ***** ********** ***** **
consensus_5549#0 ACTGCCACCTCCTCCGCCTTGAGCATCACTGTCGCCATGAGG-TCATTG----------- 767
consensus_5549#2 ACTGCCACCTCCTCCGCCTTGAGCATCACTGTCGCCATGAGG-TCATTG----------- 279
consensus_5549#1 ACTACCACCTCCTCCGCCTTGAGGGTCACTGTCGCCATGAGGGTGGTTGTCCAAACCTGA 329
*** ******************* ***************** * ***
consensus_5549#0 -AATGCCC---ATGCCCCCTTTTGCAAATACCTACTTGTTTTTCAAGTTTATG------T 817
consensus_5549#2 -AATGCCC---ATGCCCCCTTTTGCAAATACCTACTTGTTTTTCAAGTTTATG------T 329
consensus_5549#1 TAATGCTTTATAGGCAGCCTATGGCCAGTAC--GATAACTTTTAAAGCTAGCGGATTTTT 387
***** * ** *** * ** * *** * **** *** * * *
consensus_5549#0 TGAATGAAGCTATCAGTTCTCTTTCTGTTCGATTTGCCACCACT-------ATTTGATAA 870
consensus_5549#2 TGAATGAAGCTATCAGTTCTCTTTCTGTTCGATTTGCCACCACT-------ATTTGATAA 382
consensus_5549#1 TTATAAAAGCCTGAAGCCCATTCTGTCAGCAAAAGGATGATATTGAGCTGGATTTAACAG 447
* * **** ** * * * * * * * * * **** * *
consensus_5549#0 CCTAGGAATGGCA-GGTAATGCCAATGCTCCCAGGTTGCATTGCTCTGTTTTTTTCCTAG 929
consensus_5549#2 CCTAGGAATGGCA-GGTAATGCCAATGCTCCCAGGTTGCATTGCTCTGTTTTTTTCCTAG 441
consensus_5549#1 TTTCAACAGGACTTGACCAAGGGAATGGTACCATGTT--ATTGGTAAATTTTAATTTCAG 505
* * * * * * * **** * *** *** **** * **** * **
consensus_5549#0 AAGATAGAGTATTATAT------GTTGCTTCACTGAAATAGTAGGTCTGGCCATTATTAC 983
consensus_5549#2 AAGATAGAGTATTATAT------GTTGCTTCACTGAAATAGTAGGTCTGGCCATTATTAC 495
consensus_5549#1 GT-ATTGAATATTTTCTTTGTCCATTGCTTCATATTAATAAGTGGAGTAGTTTCTCTGTA 564
** ** **** * * ******** **** ** * * * *
consensus_5549#0 CATGCACCCGCTCAA--------------------------------------------- 998
consensus_5549#2 CATGCACCCGCTCAA--------------------------------------------- 510
consensus_5549#1 TAGATCAATGATCTATTTTTGGAGCTCAAGACAATGAAACCATGTTTTCATGTGAATCCA 624
* * ** *
consensus_5549#0 ------------------------------------------------------------
consensus_5549#2 ------------------------------------------------------------
consensus_5549#1 GTGAATATCCTGGAAGTCATTAGCATGAATTTTGATGCTCCTTATTTTTAAAAAAAAAAA 684
consensus_5549#0 -----------
consensus_5549#2 -----------
consensus_5549#1 AAAAAAAAAAA 695
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||