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Oryza sativa
cluster # 5550 cluster # 5550       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5550#0 length = 2149 sequences # 3  

consensusID : consensus_5550#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2149
fasta sequence
                              [CCCGTGTCTCTCGCCGCGGCGTCCTCCGGCCACCACCCCGCGCCGCGCCGCCGTCTACGGATCCCCGCTCCTCGCTCGAGCGAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGAAACGACATGTGGATCTTTGCTGCAGCAACTTCAGTTGATATGGGATGAGGTTGGTGAAAGCGATGAAGACCGTGACAAGATGTTACTTCAGCTAGAACAAGAATGCTTGGATGTTTACAGGAGAAAGGTTGATCAGGCATCTAATTCCAGGGCACGCCTCCTTCAACAGCTTGCTAACGCCAAGTCTGAGCTTTCTAGACTCCTTTGTGCACTAGGCGAGCTGTCTATTTCTGGCATTCCTGACAAGACAACCGGTACTATCAAGGAGCAACTAGAAGCAATATCACCTTTCTTGGAGAAACTCTGCAGGGAAAAAGATAAGAGGGTTAGAGAGTTTGCTGGTGTACAACTTCAAATTCAAACTATACGTGGTGAAATCGCTGGGAGTCTGCAAGTTGGTGACCACATGGAAACACCCCGTGTTAATGAGGATGATCTTTCAACGAAGAAATTAAATGAATTTCTTTCTGAATTGCAAGCTCTACAAAAGGAAAAGAGCAATAGACTGCACAAGATTCTTGACTTCGTGAGTTCAGTGCATGATCTCTGTTCTGTCCTTGGGATGGATTTCCTGAGCACTGTTACTGAAGTTCATCCTAGTCTCAATGACTCGGTTGGTGCCGAGTTCAAGAGCATTAGTGACGCAACATTATCCAAGCTGTCTAAGATGGTAATTCAACTTAAAGAAGAGAAATCAAAGAGACTTGAAAGGATTCAAGCTCTAGCTTCCCAGCTAACTGATCTTTGGAACCTAATGGACACCTCTGCTGATGAGCGACAACTTTTTGACCATGTCACATGCAACATTTCCTCAACATTGGATGAAGTAACAGCACCAGGAGCTCTTGATATTGATTTGATCGAACAGGCTGAACTTGAAGTTGAAAGGCTGGATCAGCTCAAAGCTAGTAGGATGAAGGATATTGCGTTCAAAAGGCAGACTGAACTTGAAGATATATATGCCCAGGCTCACATTACGATAGATACCAGTGCTGCAAGAGATAGAATACTGACTGTTATTGATTCTAGTATCTTCGAGCCTTCGGAACTACTGGCTGATATGGAGAACCAGATACTTAAAGCAAAAGAAGAGGCACTAAGCAGAAAGGACATTCTGGAGAAGGTTGAAAGGTGGATGTCAGCATGCGAAGAAGAGAGCTGGCTTGAAGACTATAGCCAGGACGACAACAGATACAGTGCAACCAGAGGTGCACATCTGAACCTCAAGCGGGCAGAAAAGGCTCGTCTTTTGGTCAGTAAAATTCCAGTCATTGTTGATACACTGATGGCAAAGACCCGGGCATGGGAACAAGAGCATGGTATGCCGTTCAGCTATGACGGTGTTCATCTTCTCGCAATGCTGGATGAGTACAAAGTACTAAGGCAGCAGAAGGAAGAAGAGAAGCGACGAATGAGGGACCAGAAGAAGATAAACGACCAGCTAGCTGCAGAGCAGGAGAAGCTCTTCGGCTCGAAACCGAGCCCAGCCCGGCCCCAATCCTCAAGGAAGGCGCCTGGCCCGCGGGCCAACGGTGGCGCAGTCAATGGCACACCGAACCGGAGGCTCTCGGCCCACCAGAACGGCGGCGGCAGGTCGGTGAGCCGGGACGGGCGGAGGGACAGTGGCCGGCCGGCTGCTCCGGTGAACTACGTCGCCATCTGCAAGGAAGAGTCCAGCAACAACAACCCGGCGGCGTCCTCCCCCTGACGATCATCCTCGCCATGATTGACCGTACATTTCTTGGTGCCAGTGGTAGAGAGATACTCCATATCTGTGCAGTAGCAGGAAAAAAAGAAAAACTATAGCAAGATACTAGTAGGACAAGTGATTCGAATGATAGTAGCAGTATTTTGGCTGTATTTGAATCGATTTGTTGCTGTCCATTTGCTGGTAGTGGATCGAATGGATCGAGTGGGTGCAGCCGTGCAGGTGCATCCGCCATGGAAGCTGAGCTCATGTCGTCGT]

[+] EMBL AK067236             [CCCGTGTCTCTCGCCGCGGCGTCCTCCGGCCACCACCCCGCGCCGCGCCGCCGTCTACGGATCCCCGCTCCTCGCTCGAGCGAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGAAACGACATGTGGATCTTTGCTGCAGCAACTTCAGTTGATATGGGATGAGGTTGGTGAAAGCGATGAAGACCGTGACAAGATGTTACTTCAGCTAGAACAAGAATGCTTGGATGTTTACAGGAGAAAGGTTGATCAGGCATCTAATTCCAGGGCACGCCTCCTTCAACAGCTTGCTAACGCCAAGTCTGAGCTTTCTAGACTCCTTTGTGCACTAGGCGAGCTGTCTATTTCTGGCATTCCTGACAAGACAACCGGTACTATCAAGGAGCAACTAGAAGCAATATCACCTTTCTTGGAGAAACTCTGCAGGGAAAAAGATAAGAGGGTTAGAGAGTTTGCTGGTGTACAACTTCAAATTCAAACTATACGTGGTGAAATCGCTGGGAGTCTGCAAGTTGGTGACCACATGGAAACACCCCGTGTTAATGAGGATGATCTTTCAACGAAGAAATTAAATGAATTTCTTTCTGAATTGCAAGCTCTACAAAAGGAAAAGAGCAATAGACTGCACAAGATTCTTGACTTCGTGAGTTCAGTGCATGATCTCTGTTCTGTCCTTGGGATGGATTTCCTGAGCACTGTTACTGAAGTTCATCCTAGTCTCAATGACTCGGTTGGTGCCGAGTTCAAGAGCATTAGTGACGCAACATTATCCAAGCTGTCTAAGATGGTAATTCAACTTAAAGAAGAGAAATCAAAGAGACTTGAAAGGATTCAAGCTCTAGCTTCCCAGCTAACTGATCTTTGGAACCTAATGGACACCTCTGCTGATGAGCGACAACTTTTTGACCATGTCACATGCAACATTTCCTCAACATTGGATGAAGTAACAGCACCAGGAGCTCTTGATATTGATTTGATCGAACAGGCTGAACTTGAAGTTGAAAGGCTGGATCAGCTCAAAGCTAGTAGGATGAAGGATATTGCGTTCAAAAGGCAGACTGAACTTGAAGATATATATGCCCAGGCTCACATTACGATAGATACCAGTGCTGCAAGAGATAGAATACTGACTGTTATTGATTCTAGTATCTTCGAGCCTTCGGAACTACTGGCTGATATGGAGAACCAGATACTTAAAGCAAAAGAAGAGGCACTAAGCAGAAAGGACATTCTGGAGAAGGTTGAAAGGTGGATGTCAGCATGCGAAGAAGAGAGCTGGCTTGAAGACTATAGCCAGGACGACAACAGATACAGTGCAACCAGAGGTGCACATCTGAACCTCAAGCGGGCAGAAAAGGCTCGTCTTTTGGTCAGTAAAATTCCAGTCATTGTTGATACACTGATGGCAAAGACCCGGGCATGGGAACAAGAGCATGGTATGCCGTTCAGCTATGACGGTGTTCATCTTCTCGCAATGCTGGATGAGTACAAAGTACTAAGGCAGCAGAAGGAAGAAGAGAAGCGACGAATGAGGGACCAGAAGAAGATAAACGACCAGCTAGCTGCAGAGCAGGAGAAGCTCTTCGGCTCGAAACCGAGCCCAGCCCGGCCCCAATCCTCAAGGAAGGCGCCTGGCCCGCGGGCCAACGGTGGCGCAGTCAATGGCACACCGAACCGGAGGCTCTCGGCCCACCAGAACGGCGGCGGCAGGTCGGTGAGCCGGGACGGGCGGAGGGACAGTGGCCGGCCGGCTGCTCCGGTGAACTACGTCGCCATCTGCAAGGAAGAGTCCAGCAACAACAACCCGGCGGCGTCCTCCCCCTGACGATCATCCTCGCCATGATTGACCGTACATTTCTTGGTGCCAGTGGTAGAGAGATACTCCATATCTGTGCAGTAGCAGGAAAAAAAGAAAAACTATAGCAAGATACTAGTAGGACAAGTGATTCGAATGATAGTAGCAGTATTTTGGCTGTATTTGAATCGATTTGTTGCTGTCCATTTGCTGGTAGTGGATCGAATGGATCGAGTGGGTGCAGCCGTGCAGGTGCATCCGCCATGGAAGCTGAGCTCATGTCGTCGT]
[+] EMBL BP184792             [                                                                                                                                                                             TGATAGGTGAAACGACATGTGGATCTTTGCTGCAGCAACTTCAGTTGATATGGGATGAGGTTGGTGAAAGCGATGAAGACCGTGACAAGATGTTACTTCAGCTAGAACAAGAATGCTTGGATGTTTACAGGAGAAAGGTTGATCAGGCATCTAATTCCAGGGCACGCCTCCTTCAACAGCTTGCTAACGCCAAGTCTGAGCTTTCTAGACTCCTTTGTGCACTAGGCGAGCTGTCTATTTCTGGCATTCCTGACAAGACAACCGGTACTATCAAGGAGCAACTAGAAGCAATATCACCTTTCTTGGAGAAACTCTGCAGGGAAAAAGATAAGAGGGTTAGAGAGTTTGCTGGTGTACAACTTCAAATTCAAACTATACGTGGTGAAATCGCTGGGAGTCTGCAAGTTGGTGACCACATGGAAACACCCCGTGTTAATGAGGATGATCTTTCAACGAAGAAATTAAATGAATTTCTTTCTGAATTGCAAGCTCTACAAAAGGAAAAGAGCAATAGACTGCACAAGATTCTTGACTTCGTGAGTTCAGTGCATGATCTCTGTTCTGTCCTTGGGATGGATTTCCTGAGCACTGTTACTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK062173             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAGTCTGCAAGTTGGTGACCACATGGAAACACCCCGTGTTAATGAGGATGATCTTTCAACGAAGAAATTAAATGAATTTCTTTCTGAATTGCAAGCTCTACAAAAGGAAAAGAGCAATAGACTGCACAAGATTCTTGACTTCGTGAGTTCAGTGCATGATCTCTGTTCTGTCCTTGGGATGGATTTCCTGAGCACTGTTACTGAAGTTCATCCTAGTCTCAATGACTCGGTTGGTGCCGAGTTCAAGAGCATTAGTGACGCAACATTATCCAAGCTGTCTAAGATGGTAATTCAACTTAAAGAAGAGAAATCAAAGAGACTTGAAAGGATTCAAGCTCTAGCTTCCCAGCTAACTGATCTTTGGAACCTAATGGACACCTCTGCTGATGAGCGACAACTTTTTGACCATGTCACATGCAACATTTCCTCAACATTGGATGAAGTAACAGCACCAGGAGCTCTTGATATTGATTTGATCGAACAGGCTGAACTTGAAGTTGAAAGGCTGGATCAGCTCAAAGCTAGTAGGATGAAGGATATTGCGTTCAAAAGGCAGACTGAACTTGAAGATATATATGCCCAGGCTCACATTACGATAGATACCAGTGCTGCAAGAGATAGAATACTGACTGTTATTGATTCTAGTATCTTCGAGCCTTCGGAACTACTGGCTGATATGGAGAACCAGATACTTAAAGCAAAAGAAGAGGCACTAAGCAGAAAGGACATTCTGGAGAAGGTTGAAAGGTGGATGTCAGCATGCGAAGAAGAGAGCTGGCTTGAAGACTATAGCCAGGACGACAACAGATACAGTGCAACCAGAGGTGCACATCTGAACCTCAAGCGGGCAGAAAAGGCTCGTCTTTTGGTCAGTAAAATTCCAGTCATTGTTGATACACTGATGGCAAAGACCCGGGCATGGGAACAAGAGCATGGTATGCCGTTCAGCTATGACGGTGTTCATCTTCTCGCAATGCTGGATGAGTACAAAGTACTAAGGCAGCAGAAGGAAGAAGAGAAGCGACGAATGAGGGACCAGAAGAAGATAAACGACCAGCTAGCTGCAGAGCAGGAGAAGCTCTTCGGCTCGAAACCGAGCCCAGCCCGGCCCCAATCCTCAAGGAAGGCGCCTGGCCCGCGGGCCAACGGTGGCGCAGTCAATGGCACACCGAACCGGAGGCTCTCGGCCCACCAGAACGGCGGCGGCAGGTCGGTGAGCCGGGACGGGCGGAGGGACAGTGGCCGGCCGGCTGCTCCGGTGAACTACGTCGCCATCTGCAAGGAAGAGTCCAGCAACAACAACCCGGCGGCGTCCTCCCCCTGACGATCATCCTCGCCATGATTGACCGTACATTTCTTGGTGCCAGTGGTAGAGAGATACTCCATATCTGTGCAGTAGCAGGAAAAAAAGAAAAACTATAGCAAGATACTAGTAGGACAAGTGATCCGAATGATAGTAGCAGTATTTTGGCTGTATTTGAATCGATTT                                                                                             ]


>consensus_5550#0 CCCGTGTCTCTCGCCGCGGCGTCCTCCGGCCACCACCCCGCGCCGCGCCGCCGTCTACGG ATCCCCGCTCCTCGCTCGAGCGAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGT GGGTTCCCCAGGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGG TGAAACGACATGTGGATCTTTGCTGCAGCAACTTCAGTTGATATGGGATGAGGTTGGTGA AAGCGATGAAGACCGTGACAAGATGTTACTTCAGCTAGAACAAGAATGCTTGGATGTTTA CAGGAGAAAGGTTGATCAGGCATCTAATTCCAGGGCACGCCTCCTTCAACAGCTTGCTAA CGCCAAGTCTGAGCTTTCTAGACTCCTTTGTGCACTAGGCGAGCTGTCTATTTCTGGCAT TCCTGACAAGACAACCGGTACTATCAAGGAGCAACTAGAAGCAATATCACCTTTCTTGGA GAAACTCTGCAGGGAAAAAGATAAGAGGGTTAGAGAGTTTGCTGGTGTACAACTTCAAAT TCAAACTATACGTGGTGAAATCGCTGGGAGTCTGCAAGTTGGTGACCACATGGAAACACC CCGTGTTAATGAGGATGATCTTTCAACGAAGAAATTAAATGAATTTCTTTCTGAATTGCA AGCTCTACAAAAGGAAAAGAGCAATAGACTGCACAAGATTCTTGACTTCGTGAGTTCAGT GCATGATCTCTGTTCTGTCCTTGGGATGGATTTCCTGAGCACTGTTACTGAAGTTCATCC TAGTCTCAATGACTCGGTTGGTGCCGAGTTCAAGAGCATTAGTGACGCAACATTATCCAA GCTGTCTAAGATGGTAATTCAACTTAAAGAAGAGAAATCAAAGAGACTTGAAAGGATTCA AGCTCTAGCTTCCCAGCTAACTGATCTTTGGAACCTAATGGACACCTCTGCTGATGAGCG ACAACTTTTTGACCATGTCACATGCAACATTTCCTCAACATTGGATGAAGTAACAGCACC AGGAGCTCTTGATATTGATTTGATCGAACAGGCTGAACTTGAAGTTGAAAGGCTGGATCA GCTCAAAGCTAGTAGGATGAAGGATATTGCGTTCAAAAGGCAGACTGAACTTGAAGATAT ATATGCCCAGGCTCACATTACGATAGATACCAGTGCTGCAAGAGATAGAATACTGACTGT TATTGATTCTAGTATCTTCGAGCCTTCGGAACTACTGGCTGATATGGAGAACCAGATACT TAAAGCAAAAGAAGAGGCACTAAGCAGAAAGGACATTCTGGAGAAGGTTGAAAGGTGGAT GTCAGCATGCGAAGAAGAGAGCTGGCTTGAAGACTATAGCCAGGACGACAACAGATACAG TGCAACCAGAGGTGCACATCTGAACCTCAAGCGGGCAGAAAAGGCTCGTCTTTTGGTCAG TAAAATTCCAGTCATTGTTGATACACTGATGGCAAAGACCCGGGCATGGGAACAAGAGCA TGGTATGCCGTTCAGCTATGACGGTGTTCATCTTCTCGCAATGCTGGATGAGTACAAAGT ACTAAGGCAGCAGAAGGAAGAAGAGAAGCGACGAATGAGGGACCAGAAGAAGATAAACGA CCAGCTAGCTGCAGAGCAGGAGAAGCTCTTCGGCTCGAAACCGAGCCCAGCCCGGCCCCA ATCCTCAAGGAAGGCGCCTGGCCCGCGGGCCAACGGTGGCGCAGTCAATGGCACACCGAA CCGGAGGCTCTCGGCCCACCAGAACGGCGGCGGCAGGTCGGTGAGCCGGGACGGGCGGAG GGACAGTGGCCGGCCGGCTGCTCCGGTGAACTACGTCGCCATCTGCAAGGAAGAGTCCAG CAACAACAACCCGGCGGCGTCCTCCCCCTGACGATCATCCTCGCCATGATTGACCGTACA TTTCTTGGTGCCAGTGGTAGAGAGATACTCCATATCTGTGCAGTAGCAGGAAAAAAAGAA AAACTATAGCAAGATACTAGTAGGACAAGTGATTCGAATGATAGTAGCAGTATTTTGGCT GTATTTGAATCGATTTGTTGCTGTCCATTTGCTGGTAGTGGATCGAATGGATCGAGTGGG TGCAGCCGTGCAGGTGCATCCGCCATGGAAGCTGAGCTCATGTCGTCGT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)