cluster # 5551

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Oryza sativa
cluster # 5551 cluster # 5551 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5551#0 length = 1637 sequences # 2

consensus_5551#1 length = 256 sequences # 1

consensusID : consensus_5551#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1637
fasta sequence

                              [TCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCCTCTCTCTCCAATCGAATCGGAATCCATGGAGTCGTCGCGGTCGCGGAAGCGGGCCCGCCAGGACTGGGACGGCGCCGGCGCGCCGCCGCCGCCGGCGGAGCGGGCGGTGGTGGCGAGGGGCGGCGCGTCGCCGCCGTGGAGGGACGACGACCGCGACGGGCACTACGTGTTCGACCTCGGCGAGAACTTGAACCGACGATACAAAATCTTGAGCAAAATGGGAGAAGGTACTTTTGGGCGTGTTTTGGAATGCTGGGACCGTGAAACACATGAATATGTCGCAATAAAAGTTGTTCGTAGCATCCGCAAGTACAGGGATGCTGCAATGATTGAGATCGATGTGCTCAACCGCCTTGCAGAAAATGAGAGATACAGATCACTCTGTGTCCAGATTCAAGGATGGTTTGACTATCGCAATCATATATGCATTGTTTTTGAGAAGCTTGGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGAAGAATTCACAAGATGAGATGCATTTCAAGTGCTTACCAAAGTCCAGTGCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATAGCTCGATTGTTTCTACAAGGCATTACAGAGCACCTGAAATAATCTTAGGCTTAGGGTGGAGTTTCCCTTGTGACCTTTGGAGTGTCGGATGCATCATTGTTGAGCTATGCTCGGGGGAAGCATTGTTTCAAACACATGAGAACCTTGAGCACTTAGCAATGATGGAGAGGGTTTTGGGTCCACTCCCAGAACACATGATAAGGAAAGCCAGTTCATCAGCTCAGAAATATTTTAGACGAGGAGCGCGTCTAAATTGGCCTGAAGGTGCTGTTTCAAGAGAGAGTATCAGAGCAGTCAAAAAACTAGATCGGCTAAAGGACTTAGTGGCGAGGAAGGCTGATCATTCAAGGGCGGTGCTGGCAGACTTGTTATATGGGCTTTTAAAATTTGAGCCATCAGAGCGTCTTACTGCCCAAGAAGCTCTAGACCATCCATTTTTCAGAAATACAACATGAGTACATGATCATGCTGACTCTACCCCTCCCAATATGTACGTGAAGAACCCAAGCCTGGAGAAAGCAGGCGCAAGGACATTCCCATATAAAGCAGAATGCCTTCAGCTCATCTGTACCATAAATCTTCTGTAAGCTGAGCTATAATGCTTGTGGTGGTGACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGGGAAGGTTGATGTAGCAGATGGAACTTGTGCATTGTGAGTTGTGTGATACATGAGGAATTGCATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATATGCCCCTTCCAAATGCTTGTATGATGTATCCTTGCTGGGGTGTTCATGTTACTTAAAAAAAAAAAAAAAAAAACTCGAGACTAGTT]

[+] EMBL AK066167             [TCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCCTCTCTCTCCAATCGAATCGGAATCCATGGAGTCGTCGCGGTCGCGGAAGCGGGCCCGCCAGGACTGGGACGGCGCCGGCGCGCCGCCGCCGCCGGCGGAGCGGGCGGTGGTGGCGAGGGGCGGCGCGTCGCCGCCGTGGAGGGACGACGACCGCGACGGGCACTACGTGTTCGACCTCGGCGAGAACTTGAACCGACGATACAAAATCTTGAGCAAAATGGGAGAAGGTACTTTTGGGCGTGTTTTGGAATGCTGGGACCGTGAAACACATGAATATGTCGCAATAAAAGTTGTTCGTAGCATCCGCAAGTACAGGGATGCTGCAATGATTGAGATCGATGTGCTCAACCGCCTTGCAGAAAATGAGAGATACAGATCACTCTGTGTCCAGATTCAAGGATGGTTTGACTATCGCAATCATATATGCATTGTTTTTGAGAAGCTTGGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGAAGAATTCACAAGATGAGATGCATTTCAAGTGCTTACCAAAGTCCAGTGCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATAGCTCGATTGTTTCTACAAGGCATTACAGAGCACCTGAAATAATCTTAGGCTTAGGGTGGAGTTTCCCTTGTGACCTTTGGAGTGTCGGATGCATCATTGTTGAGCTATGCTCGGGGGAAGCATTGTTTCAAACACATGAGAACCTTGAGCACTTAGCAATGATGGAGAGGGTTTTGGGTCCACTCCCAGAACACATGATAAGGAAAGCCAGTTCATCAGCTCAGAAATATTTTAGACGAGGAGCGCGTCTAAATTGGCCTGAAGGTGCTGTTTCAAGAGAGAGTATCAGAGCAGTCAAAAAACTAGATCGGCTAAAGGACTTAGTGGCGAGGAAGGCTGATCATTCAAGGGCGGTGCTGGCAGACTTGTTATATGGGCTTTTAAAATTTGAGCCATCAGAGCGTCTTACTGCCCAAGAAGCTCTAGACCATCCATTTTTCAGAAATACAACATGAGTACATGATCATGCTGACTCTACCCCTCCCAATATGTACGTGAAGAACCCAAGCCTGGAGAAAGCAGGCGCAAGGACATTCCCATATAAAGCAGAATGCCTTCAGCTCATCTGTACCATAAATCTTCTGTAAGCTGAGCTATAATGCTTGTGGTGGTGACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGGGAAGGTTGATGTAGCAGATGGAACTTGTGCATTGTGAGTTGTGTGATACATGAGGAATTGCATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATA                                                                                      ]
[-] EMBL CF303601             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGCTCTAGACCATCCATTTTTCAGAAATACAACATGAGTACATGATCATGCTGACTCTACCCCTCCCAATATGTACGTGAAGAACCCAAGCCTGGAGAAAGCAGGCGCAAGGACATTCCCATATAAAGCAGAATGCCTTCAGCTCATCTGTACCATAAATCTTCTGTAAGCTGAGCTATAATGCTTGTGGTGGTGACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGGGAAGGTTGATGTAGCAGATGGAACTTGTGCATTGTGAGTTGTGTGATACATGAGGAATTGCATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATATGCCCCTTCCAAATGCTTGTATGATGTATCCTTGCTGGGGTGTTCATGTTACTTAAAAAAAAAAAAAAAAAAACTCGAGACTAGTT]




>consensus_5551#0
TCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCCTCTCTCTCCAATCGAATCGGAATCCA
TGGAGTCGTCGCGGTCGCGGAAGCGGGCCCGCCAGGACTGGGACGGCGCCGGCGCGCCGC
CGCCGCCGGCGGAGCGGGCGGTGGTGGCGAGGGGCGGCGCGTCGCCGCCGTGGAGGGACG
ACGACCGCGACGGGCACTACGTGTTCGACCTCGGCGAGAACTTGAACCGACGATACAAAA
TCTTGAGCAAAATGGGAGAAGGTACTTTTGGGCGTGTTTTGGAATGCTGGGACCGTGAAA
CACATGAATATGTCGCAATAAAAGTTGTTCGTAGCATCCGCAAGTACAGGGATGCTGCAA
TGATTGAGATCGATGTGCTCAACCGCCTTGCAGAAAATGAGAGATACAGATCACTCTGTG
TCCAGATTCAAGGATGGTTTGACTATCGCAATCATATATGCATTGTTTTTGAGAAGCTTG
GGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTG
TGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATATATGCATGAATTACGCCTTA
TTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTC
CAGGTTCCAAGAAGAATTCACAAGATGAGATGCATTTCAAGTGCTTACCAAAGTCCAGTG
CCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATAGCTCGATTG
TTTCTACAAGGCATTACAGAGCACCTGAAATAATCTTAGGCTTAGGGTGGAGTTTCCCTT
GTGACCTTTGGAGTGTCGGATGCATCATTGTTGAGCTATGCTCGGGGGAAGCATTGTTTC
AAACACATGAGAACCTTGAGCACTTAGCAATGATGGAGAGGGTTTTGGGTCCACTCCCAG
AACACATGATAAGGAAAGCCAGTTCATCAGCTCAGAAATATTTTAGACGAGGAGCGCGTC
TAAATTGGCCTGAAGGTGCTGTTTCAAGAGAGAGTATCAGAGCAGTCAAAAAACTAGATC
GGCTAAAGGACTTAGTGGCGAGGAAGGCTGATCATTCAAGGGCGGTGCTGGCAGACTTGT
TATATGGGCTTTTAAAATTTGAGCCATCAGAGCGTCTTACTGCCCAAGAAGCTCTAGACC
ATCCATTTTTCAGAAATACAACATGAGTACATGATCATGCTGACTCTACCCCTCCCAATA
TGTACGTGAAGAACCCAAGCCTGGAGAAAGCAGGCGCAAGGACATTCCCATATAAAGCAG
AATGCCTTCAGCTCATCTGTACCATAAATCTTCTGTAAGCTGAGCTATAATGCTTGTGGT
GGTGACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGG
GAAGGTTGATGTAGCAGATGGAACTTGTGCATTGTGAGTTGTGTGATACATGAGGAATTG
CATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATATGCCCCTTC
CAAATGCTTGTATGATGTATCCTTGCTGGGGTGTTCATGTTACTTAAAAAAAAAAAAAAA
AAAACTCGAGACTAGTT

consensusID : consensus_5551#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 256
fasta sequence

                              [GACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGGGAAGGTTGATGTAGCAGATGGAACTTGCGCATTGCGAGTTGTGTGATACATGAGGAATTGCATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATATGCCCCTTCCAAATGCTTGTATGATGCATCCTTGCTGGGGTGTTCATGTTACTTAAACATATCTGTATCCTGAAGTTCCGNTGAAAGC]

[+] EMBL BE230502             [GACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGGGAAGGTTGATGTAGCAGATGGAACTTGCGCATTGCGAGTTGTGTGATACATGAGGAATTGCATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATATGCCCCTTCCAAATGCTTGTATGATGCATCCTTGCTGGGGTGTTCATGTTACTTAAACATATCTGTATCCTGAAGTTCCGNTGAAAGC]




>consensus_5551#1
GACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGGGAA
GGTTGATGTAGCAGATGGAACTTGCGCATTGCGAGTTGTGTGATACATGAGGAATTGCAT
TGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATATGCCCCTTCCAA
ATGCTTGTATGATGCATCCTTGCTGGGGTGTTCATGTTACTTAAACATATCTGTATCCTG
AAGTTCCGNTGAAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5551#0      TCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCCTCTCTCTCCAATCGAATCGGAATCCA 60
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      TGGAGTCGTCGCGGTCGCGGAAGCGGGCCCGCCAGGACTGGGACGGCGCCGGCGCGCCGC 120
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      CGCCGCCGGCGGAGCGGGCGGTGGTGGCGAGGGGCGGCGCGTCGCCGCCGTGGAGGGACG 180
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      ACGACCGCGACGGGCACTACGTGTTCGACCTCGGCGAGAACTTGAACCGACGATACAAAA 240
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      TCTTGAGCAAAATGGGAGAAGGTACTTTTGGGCGTGTTTTGGAATGCTGGGACCGTGAAA 300
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      CACATGAATATGTCGCAATAAAAGTTGTTCGTAGCATCCGCAAGTACAGGGATGCTGCAA 360
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      TGATTGAGATCGATGTGCTCAACCGCCTTGCAGAAAATGAGAGATACAGATCACTCTGTG 420
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      TCCAGATTCAAGGATGGTTTGACTATCGCAATCATATATGCATTGTTTTTGAGAAGCTTG 480
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      GGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTG 540
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      TGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATATATGCATGAATTACGCCTTA 600
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      TTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTC 660
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      CAGGTTCCAAGAAGAATTCACAAGATGAGATGCATTTCAAGTGCTTACCAAAGTCCAGTG 720
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      CCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATAGCTCGATTG 780
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      TTTCTACAAGGCATTACAGAGCACCTGAAATAATCTTAGGCTTAGGGTGGAGTTTCCCTT 840
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      GTGACCTTTGGAGTGTCGGATGCATCATTGTTGAGCTATGCTCGGGGGAAGCATTGTTTC 900
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      AAACACATGAGAACCTTGAGCACTTAGCAATGATGGAGAGGGTTTTGGGTCCACTCCCAG 960
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      AACACATGATAAGGAAAGCCAGTTCATCAGCTCAGAAATATTTTAGACGAGGAGCGCGTC 1020
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      TAAATTGGCCTGAAGGTGCTGTTTCAAGAGAGAGTATCAGAGCAGTCAAAAAACTAGATC 1080
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      GGCTAAAGGACTTAGTGGCGAGGAAGGCTGATCATTCAAGGGCGGTGCTGGCAGACTTGT 1140
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      TATATGGGCTTTTAAAATTTGAGCCATCAGAGCGTCTTACTGCCCAAGAAGCTCTAGACC 1200
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      ATCCATTTTTCAGAAATACAACATGAGTACATGATCATGCTGACTCTACCCCTCCCAATA 1260
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      TGTACGTGAAGAACCCAAGCCTGGAGAAAGCAGGCGCAAGGACATTCCCATATAAAGCAG 1320
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      AATGCCTTCAGCTCATCTGTACCATAAATCTTCTGTAAGCTGAGCTATAATGCTTGTGGT 1380
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      GGTGACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGG 1440
consensus_5551#1      ---GACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGG 57
                         *********************************************************

consensus_5551#0      GAAGGTTGATGTAGCAGATGGAACTTGTGCATTGTGAGTTGTGTGATACATGAGGAATTG 1500
consensus_5551#1      GAAGGTTGATGTAGCAGATGGAACTTGCGCATTGCGAGTTGTGTGATACATGAGGAATTG 117
                      *************************** ****** *************************

consensus_5551#0      CATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATATGCCCCTTC 1560
consensus_5551#1      CATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATATGCCCCTTC 177
                      ************************************************************

consensus_5551#0      CAAATGCTTGTATGATGTATCCTTGCTGGGGTGTTCATGTTACTTAAAAAAAAAAAAAA- 1619
consensus_5551#1      CAAATGCTTGTATGATGCATCCTTGCTGGGGTGTTCATGTTACTTAAACATATCTGTATC 237
                      ***************** ****************************** * *     *  

consensus_5551#0      --AAAAACTCGAGACTAGTT 1637
consensus_5551#1      CTGAAGTTCCGNTGAAAGC- 256
                         **    **     **