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Oryza sativa
cluster # 5558 cluster # 5558       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5558#0 length = 1597 sequences # 3  

consensusID : consensus_5558#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1597
fasta sequence
                              [ACCCTCGTCTCCCTCACTGTCCCGTCCCTGCGGCTGCGCTCCACTCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTCGTCCGCGTCTCCGTCTCCGTCCTCGCCGAGGTATCCCGTCTCGTCTCCTCCGCTCCTTGCGTCATCTCTCTGCTGAACAGGGGAGGGGCGCCGATCTCCATCTGGCGAGCAGAGCAGGGGAGGGGATCCTGAACATTGTGAGAATGGCCTGGAGTCAGAGTGCTAGAAAGCCCATGATTGGGCTTCTGTTTCGCGCCCAACAACATTCTGCTCGGGGTTACTCTTATTCAGCGTTCCAGGCTCACCTTTCGAGCAGCAATGTCGATCAAAGCGCCACACTTCTCAGGAGATTCAGCTCCGAAGTTCCTGCGTCGGAGCAAATGAATCTCATCAAACAGCTGAGGGAGAGGACGAGCGCTCCAATCAAAGATGTGAAGGCTTCCTTAGTTAGTTGCAACTGGGATATTGATGTTGCACAGAAGGACCTAAGGAAGAGAGGGGTGGTTCTTGCTGCCAAAAAGTCTTCACGGACTGCAGCTGAAGGTTTGCTTGCTATTGCACAAGATGAGAAAAGGGCCGCTGTGGTTGAGCTTAACTGTGAGACGGATTTTGTGGCAAGAAATGATGTTTTCCAGTATCTGGCTTCTTCTTTAGCAAAGTTGGCTTTATCAGCAAGGGATCCTGGTGAATTGGTTTTTCCTTTTGGTCCTGACTATTTGGAGAACCTTAATGTCAATCTTGATCATCCTAAACTTAGTGGGGAGACAACAGTCCAAAGTGCTGTCACAGAAGTTGCTGCCATGGTTGGGGAGAATGTCAAATTCAGAAGAGGTTTCATTATGTCCACAACTGCACATGGTGTTGTTTGCTCTTATATGCACACATGTCCCCAGCCAGGTTTGGGTCGTCTTGCTGGCTTGATCACACTAGAGGCAGAAGACAGCAATGCTCCTCTTGATGCTCTTCAGAGAGTCGGGAAATCTATTGCAATGCACATCGTTGCGACAAAGCCGTTGTTTTTATCAAAAGAACTGGTCTCTGCTTCAGCTGTTGAAAATGAGAGGGACATACTCCGGACTCAGGCTGAAAGCTCTGGAAAATCCCAAATGGCCATGGAGAAAATGGTGGAAGGCCGACTAAGAAAGTATTTTGAAGAAGTTGTGCTTTTGGAGCAAAAATATGTTGTCAATGACAGCACAAACATCAAGAGCGTCCTGAATGATTTGTCAAAGGAAGTTGGCTCAAAAGTTACAGTTGGCAATTTTGCTAGGATGGAAGTTGGCGAAGGAGTTTCAAAGGCCTGATGAGTCCACTGGGTCTGAAGCTACGGCTCGTTCTGCATAGTTTTCAAGCTGACATGAATCAAATGTGATAATTGAGATATGCTGAGGTTTCTCTTCTTCTCAAGTTAGATTTATTAGTCTCCTGAGAACTGTACTACTTTTTCCGCGGTTTGGCTCCAACAATACGGTCATATTTTTCTACAAATGCTATGTATCAATTAGTTTACAAGTGAACTTTCTCTAGAGAGTATTGTAACAATTCGAATTTAATGAAATAATGTTTGATCTAAGCGGC]

[+] EMBL AK071873             [ACCCTCGTCTCCCTCACTGTCCCGTCCCTGCGGCTGCGCTCCACTCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTCGTCCGCGTCTCCGTCTCCGTCCTCGCCGAGGTATCCCGTCTCGTCTCCTCCGCTCCTTGCGTCATCTCTCTGCTGAACAGGGGAGGGGCGCCGATCTCCATCTGGCGAGCAGAGCAGGGGAGGGGATCCTGAACATTGTGAGAATGGCCTGGAGTCAGAGTGCTAGAAAGCCCATGATTGGGCTTCTGTTTCGCGCCCAACAACATTCTGCTCGGGGTTACTCTTATTCAGCGTTCCAGGCTCACCTTTCGAGCAGCAATGTCGATCAAAGCGCCACACTTCTCAGGAGATTCAGCTCCGAAGTTCCTGCGTCGGAGCAAATGAATCTCATCAAACAGCTGAGGGAGAGGACGAGCGCTCCAATCAAAGATGTGAAGGCTTCCTTAGTTAGTTGCAACTGGGATATTGATGTTGCACAGAAGGACCTAAGGAAGAGAGGGGTGGTTCTTGCTGCCAAAAAGTCTTCACGGACTGCAGCTGAAGGTTTGCTTGCTATTGCACAAGATGAGAAAAGGGCCGCTGTGGTTGAGCTTAACTGTGAGACGGATTTTGTGGCAAGAAATGATGTTTTCCAGTATCTGGCTTCTTCTTTAGCAAAGTTGGCTTTATCAGCAAGGGATCCTGGTGAATTGGTTTTTCCTTTTGGTCCTGACTATTTGGAGAACCTTAATGTCAATCTTGATCATCCTAAACTTAGTGGGGAGACAACAGTCCAAAGTGCTGTCACAGAAGTTGCTGCCATGGTTGGGGAGAATGTCAAATTCAGAAGAGGTTTCATTATGTCCACAACTGCACATGGTGTTGTTTGCTCTTATATGCACACATGTCCCCAGCCAGGTTTGGGTCGTCTTGCTGGCTTGATCACACTAGAGGCAGAAGACAGCAATGCTCCTCTTGATGCTCTTCAGAGAGTCGGGAAATCTATTGCAATGCACATCGTTGCGACAAAGCCGTTGTTTTTATCAAAAGAACTGGTCTCTGCTTCAGCTGTTGAAAATGAGAGGGACATACTCCGGACTCAGGCTGAAAGCTCTGGAAAATCCCAAATGGCCATGGAGAAAATGGTGGAAGGCCGACTAAGAAAGTATTTTGAAGAAGTTGTGCTTTTGGAGCAAAAATATGTTGTCAATGACAGCACAAACATCAAGAGCGTCCTGAATGATTTGTCAAAGGAAGTTGGCTCAAAAGTTACAGTTGGCAATTTTGCTAGGATGGAAGTTGGCGAAGGAGTTTCAAAGGCCTGATGAGTCCACTGGGTCTGAAGCTACGGCTCGTTCTGCATAGTTTTCAAGCTGACATGAATCAAATGTGATAATTGAGATATGCTGAGGTTTCTCTTCTTCTCAAGTTAGATTTATTAGTCTCCTGAGAACTGTACTACTTTTTCCGCGGTTTGGCTCCAACAATACGGTCATATTTTTCTACAAATGCTATGTATCAATTAGTTTACAAGTGAACTTTCTCTAGAGAGTATTGTAACAATTCGAATTTAATGAAATAA                 ]
[+] EMBL AK058957             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GACATACTCCGGACTCAGGCTGAAAGCTCTGGAAAATCCCAAATGGCCATGGAGAAAATGGTGGAAGGCCGACTAAGAAAGTATTTTGAAGAAGTTGTGCTTTTGGAGCAAAAATATGTTGTCAATGACAGCACAAACATCAAGAGCGCCCTGAATGATTTGTCAAAGGAAGTTGGCTCAAAAGTTACAGTTGGCAATTTTGCTAGGATGGAAGTTGGCGAAGGAGTTTCAGAGGCCTGATGAGTCCACTGGGTCTGAAGCTACGGCTCGTTCTGCATAGTTTTCAAGCTGACATGAATCAAATGTGATAATTGAGATATGCTGAGGTTTCTCTTCTTCTCAAGTTAGATTTATTAGTCTCCTGAGAACTGTACTACTTTTTCCGCGGTTTGGCTCCAACAATACGGTCATATTTTTCTACAAATGCTATGTATCAATTAGTTTACAAGTGAACTTTCTCTAGAGAGTATTGTAACAATTCGAATTTAATGAAATAA                 ]
[-] EMBL AU225399             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AATGGTGGAAGGCCGACTAAGAAAGTATTTTGAAGAAGTTGTGCTTTTGGAGCAAAAATATGTTGTCAATGACAGCACAAACATCAAGAGCGTCCTGAATGATTTGTCAAAGGAAGTTGGCTCAAAAGTTACAGTTGGCAATTTTGCTAGGATGGAAGTTGGCGAAGGAGTTTCAAAGGCCTGATGAGTCCACTGGGTCTGAAGCTACGGCTCGTTCTGCATAGTTTTCAAGCTGACATGAATCAAATGTGATAATTGAGATATGCTGAGGTTTCTCTTCTTCTCAAGTTAGATTTATTAGTCTCCTGAGAACTGTACTACTTTTTCCGCGGTTTGGCTCCAACAATACGGTCATATTTTTCTACAAATGCTATGTATCAATTAGTTTACAAGTGAACTTTCTCTAGAGAGTATTGTAACAATTCGAATTTAATGAAATAATGTTTGATCTAAGCGGC]


>consensus_5558#0 ACCCTCGTCTCCCTCACTGTCCCGTCCCTGCGGCTGCGCTCCACTCGTCGCCGCCGCCGC CGCCGCCGCCGCCGCCGTCGTCCGCGTCTCCGTCTCCGTCCTCGCCGAGGTATCCCGTCT CGTCTCCTCCGCTCCTTGCGTCATCTCTCTGCTGAACAGGGGAGGGGCGCCGATCTCCAT CTGGCGAGCAGAGCAGGGGAGGGGATCCTGAACATTGTGAGAATGGCCTGGAGTCAGAGT GCTAGAAAGCCCATGATTGGGCTTCTGTTTCGCGCCCAACAACATTCTGCTCGGGGTTAC TCTTATTCAGCGTTCCAGGCTCACCTTTCGAGCAGCAATGTCGATCAAAGCGCCACACTT CTCAGGAGATTCAGCTCCGAAGTTCCTGCGTCGGAGCAAATGAATCTCATCAAACAGCTG AGGGAGAGGACGAGCGCTCCAATCAAAGATGTGAAGGCTTCCTTAGTTAGTTGCAACTGG GATATTGATGTTGCACAGAAGGACCTAAGGAAGAGAGGGGTGGTTCTTGCTGCCAAAAAG TCTTCACGGACTGCAGCTGAAGGTTTGCTTGCTATTGCACAAGATGAGAAAAGGGCCGCT GTGGTTGAGCTTAACTGTGAGACGGATTTTGTGGCAAGAAATGATGTTTTCCAGTATCTG GCTTCTTCTTTAGCAAAGTTGGCTTTATCAGCAAGGGATCCTGGTGAATTGGTTTTTCCT TTTGGTCCTGACTATTTGGAGAACCTTAATGTCAATCTTGATCATCCTAAACTTAGTGGG GAGACAACAGTCCAAAGTGCTGTCACAGAAGTTGCTGCCATGGTTGGGGAGAATGTCAAA TTCAGAAGAGGTTTCATTATGTCCACAACTGCACATGGTGTTGTTTGCTCTTATATGCAC ACATGTCCCCAGCCAGGTTTGGGTCGTCTTGCTGGCTTGATCACACTAGAGGCAGAAGAC AGCAATGCTCCTCTTGATGCTCTTCAGAGAGTCGGGAAATCTATTGCAATGCACATCGTT GCGACAAAGCCGTTGTTTTTATCAAAAGAACTGGTCTCTGCTTCAGCTGTTGAAAATGAG AGGGACATACTCCGGACTCAGGCTGAAAGCTCTGGAAAATCCCAAATGGCCATGGAGAAA ATGGTGGAAGGCCGACTAAGAAAGTATTTTGAAGAAGTTGTGCTTTTGGAGCAAAAATAT GTTGTCAATGACAGCACAAACATCAAGAGCGTCCTGAATGATTTGTCAAAGGAAGTTGGC TCAAAAGTTACAGTTGGCAATTTTGCTAGGATGGAAGTTGGCGAAGGAGTTTCAAAGGCC TGATGAGTCCACTGGGTCTGAAGCTACGGCTCGTTCTGCATAGTTTTCAAGCTGACATGA ATCAAATGTGATAATTGAGATATGCTGAGGTTTCTCTTCTTCTCAAGTTAGATTTATTAG TCTCCTGAGAACTGTACTACTTTTTCCGCGGTTTGGCTCCAACAATACGGTCATATTTTT CTACAAATGCTATGTATCAATTAGTTTACAAGTGAACTTTCTCTAGAGAGTATTGTAACA ATTCGAATTTAATGAAATAATGTTTGATCTAAGCGGC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)