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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2340 fasta sequence
[CCTTGTGGCAGCCAGAGAATTTGGATTTGAATTTTTCAAGAGAACACAATCAAGTGTCTTTGTCAGGGAGAAATTCAGCTCTTCCAATGGCCCAGTTGAGAGGGAGTTCAAGATTCTCAATCTATTGGAGTTCAACAGCAAAAGAAAACGAATGTCAGTAATTCTGAAGGATGAAGATGGGCAAATTCTTCTTTTTTGCAAAGGAGCAGATAGCATCATATTTGATAGACTGGCAAAAAATGGAAGGATGATTGAAGCTGATACGAGCAAGCATCTCAATGATTATGGTGAGGCAGGCTTGCGGACACTGGCTCTATCATACAGAGTGCTCGATGAATCAGAATATTCCTCTTGGAATGCTGAGTTTCTTAAAGCAAAGACCTCTATTGGACCTGACAGAGAATTGCAACTTGAGCGAGTCTCAGAATTGATTGAAAGAGACCTGATCCTTGTTGGTGCAACTGCAGTAGAGGACAAACTGCAAAGTGGGGTTCCTCAGTGCATAGATCGTTTGGCACAAGCAGGTCTCAAAATCTGGGTTCTGACAGGTGATAAGATGGAAACTGCAATCAACATTGGATACGCATGCAGTTTACTGAGGCAAGGCATGAGAAGGATATGTTTGTCAATACCCACTGATGACCAAGTAGCCCAGGATGCAAATAAGGCTGCAAAGGAGAGTCTCATGTCGCAAATCGCAAATGGTTCACAAATGGTCAAGCTAGAGAAGGATCCTGATGCAGCATTTGCTCTAGTTATAGATGGAAAAGCGCTCACATTTGCTTTGGAAGATGACATGAAGCATATGTTCCTGAATCTTGCAATAGAGTGCGCTTCTGTCATATGTTGCCGTGTGTCCCCAAAGCAAAAAGCACTGGTGACTCGACTGGTCAAAGAAGGTATTGGAAAAACTACATTAGCAATAGGTGATGGTGCAAATGATGTAGGCATGATTCAAGAAGCTGATATAGGAGTTGGTATAAGTGGGGTAGAGGGCATGCAGGCTGTGATGGCTAGTGACTTTTCTATATCCCAATTTCGGTTCCTTGAGAGACTACTCGTAGTCCATGGCCATTGGTGCTATAAGAGAATTGCCCAAATGATCTGCTACTTCTTCTACAAGAATATTGCTTTTGGACTTACTATATTTTACTTTGAGGCATTTGCTGGATTTTCTGGTCAATCAGTTTATGATGATTGGTTTATGCTGCTCTTCAATGTTGTTCTTACCTCACTGCCTGTTATCTCACTTGGGGTATTTGAGCAGGATGTTTCATCTGAAATCTGCTTGCAGTTCCCGGCGTTATATCAGCAAGGACCGAGAAATCTTTTCTTCGATTGGTACCGGATTTTAGGATGGATGGCGAATGGCCTCTACTCATCTCTGGCCATATTCTTTCTCAACATCTGTATATTCTATGATCAGGCAATCCGTTCTGGAGGACAGACTGCTGACATGGCTGCAGTGGGAACTACTATGTTCACCTGCATCATCTGGGCTGTCAACATGCAGATTGCGCTGACAATGAGCCATTTCACCTGGATTCAACATCTCTTTGTCTGGGGCAGCGTAGGTACTTGGTACCTCTTCATAATCGTCTATGGCTCGGCGTTGAGGTCCCGCGACAATTACCAGATTCTACTGGAGGTTCTTGGACCTGCTCCCTTGTACTGGGCAGCAACTCTTCTGGTGACTGCTGCTTGCAACATGCCCTACCTGATCCACATATCCTACCAGAGATTGTGCAATCCACTTGATCACCATGTGATTCAAGAGATCAAGTACCTGAAGAAGGACGTCGAAGACCAAACGATGTGGAAGAGGGAGCGGTCGAAGGCCCGGCAGCGGACGAAGATTGGTTTCACCGCGAGGGTCGATGCGAAGATCAAGCAGATCAGGGGGAAGTTGCACAAGAAGGCCCCATCCCTAACCATCCATACTGTATCGTAGTGACATCTGAGTCATCTGACCGGCGTTTCGACAGTAGTTGTCACCTTACTTTTTTTCTCATGCAAGGCAGCGGTTTTTGGCTTCTCTCCCAGCTATACAGTGAAATTCTTTCTCTTCTTTTTTCTTTTTTTGGTCTTAATTTTCTGATCATATTGGATTTTTTTTTCTCCGTTCGTGTAAGGAATGTTGGGGGTGTGATGGGTGGCATTTCCCCGAGTAGAAGTTCCAAAGCCAGCCATGTAAAAAGTATAGCTCATTTCAGTTGGAAGAAGAACCTCTCTAGATAGCTGACAATATATGTATATCTGCAATTTTGCTTATTCTTTTTCCTGGCAATGTCTTCGCTGTAATTATTCGAAAAAAAAAAAAAAAAAAAAATTTTAAAAAAA]
[+] EMBL AK066838 [CCTTGTGGCAGCCAGAGAATTTGGATTTGAATTTTTCAAGAGAACACAATCAAGTGTCTTTGTCAGGGAGAAATTCAGCTCTTCCAATGGCCCAGTTGAGAGGGAGTTCAAGATTCTCAATCTATTGGAGTTCAACAGCAAAAGAAAACGAATGTCAGTAATTCTGAAGGATGAAGATGGGCAAATTCTTCTTTTTTGCAAAGGAGCAGATAGCATCATATTTGATAGACTGGCAAAAAATGGAAGGATGATTGAAGCTGATACGAGCAAGCATCTCAATGATTATGGTGAGGCAGGCTTGCGGACACTGGCTCTATCATACAGAGTGCTCGATGAATCAGAATATTCCTCTTGGAATGCTGAGTTTCTTAAAGCAAAGACCTCTATTGGACCTGACAGAGAATTGCAACTTGAGCGAGTCTCAGAATTGATTGAAAGAGACCTGATCCTTGTTGGTGCAACTGCAGTAGAGGACAAACTGCAAAGTGGGGTTCCTCAGTGCATAGATCGTTTGGCACAAGCAGGTCTCAAAATCTGGGTTCTGACAGGTGATAAGATGGAAACTGCAATCAACATTGGATACGCATGCAGTTTACTGAGGCAAGGCATGAGAAGGATATGTTTGTCAATACCCACTGATGACCAAGTAGCCCAGGATGCAAATAAGGCTGCAAAGGAGAGTCTCATGTCGCAAATCGCAAATGGTTCACAAATGGTCAAGCTAGAGAAGGATCCTGATGCAGCATTTGCTCTAGTTATAGATGGAAAAGCGCTCACATTTGCTTTGGAAGATGACATGAAGCATATGTTCCTGAATCTTGCAATAGAGTGCGCTTCTGTCATATGTTGCCGTGTGTCCCCAAAGCAAAAAGCACTGGTGACTCGACTGGTCAAAGAAGGTATTGGAAAAACTACATTAGCAATAGGTGATGGTGCAAATGATGTAGGCATGATTCAAGAAGCTGATATAGGAGTTGGTATAAGTGGGGTAGAGGGCATGCAGGCTGTGATGGCTAGTGACTTTTCTATATCCCAATTTCGGTTCCTTGAGAGACTACTCGTAGTCCATGGCCATTGGTGCTATAAGAGAATTGCCCAAATGATCTGCTACTTCTTCTACAAGAATATTGCTTTTGGACTTACTATATTTTACTTTGAGGCATTTGCTGGATTTTCTGGTCAATCAGTTTATGATGATTGGTTTATGCTGCTCTTCAATGTTGTTCTTACCTCACTGCCTGTTATCTCACTTGGGGTATTTGAGCAGGATGTTTCATCTGAAATCTGCTTGCAGTTCCCGGCGTTATATCAGCAAGGACCGAGAAATCTTTTCTTCGATTGGTACCGGATTTTAGGATGGATGGCGAATGGCCTCTACTCATCTCTGGCCATATTCTTTCTCAACATCTGTATATTCTATGATCAGGCAATCCGTTCTGGAGGACAGACTGCTGACATGGCTGCAGTGGGAACTACTATGTTCACCTGCATCATCTGGGCTGTCAACATGCAGATTGCGCTGACAATGAGCCATTTCACCTGGATTCAACATCTCTTTGTCTGGGGCAGCGTAGGTACTTGGTACCTCTTCATAATCGTCTATGGCTCGGCGTTGAGGTCCCGCGACAATTACCAGATTCTACTGGAGGTTCTTGGACCTGCTCCCTTGTACTGGGCAGCAACTCTTCTGGTGACTGCTGCTTGCAACATGCCCTACCTGATCCACATATCCTACCAGAGATTGTGCAATCCACTTGATCACCATGTGATTCAAGAGATCAAGTACCTGAAGAAGGACGTCGAAGACCAAACGATGTGGAAGAGGGAGCGGTCGAAGGCCCGGCAGCGGACGAAGATTGGTTTCACCGCGAGGGTCGATGCGAAGATCAAGCAGATCAGGGGGAAGTTGCACAAGAAGGCCCCATCCCTAACCATCCATACTGTATCGTAGTGACATCTGAGTCATCTGACCGGCGTTTCGACAGTAGTTGTCACCTTACTTTTTTTCTCATGCAAGGCAGCGGTTTTTGGCTTCTCTCCCAGCTATACAGTGAAATTCTTTCTCTTCTTTTTTCTTTTTTTGGTCTTAATTTTCTGATCATATTGGATTTTTTTTTCTCCGTTCGTGTAAGGAATGTTGGGGGTGTGATGGGTGGCATTTCCCCGAGTAGAAGTTCCAAAGCCAGCCATGTAAAAAGTATAGCTCATTTCAGTTGGAAGAAGAACCTCTCTAGATAGCTGACAATATATGTATATCTGCAATTTTGCTT ]
[+] EMBL CF322042 [ CCAGCCATGTAAAAAGTATAGCTCATTTCAGTTGGAAGAAGAACCTCTCTAGATAGCTGACAATATATGTATATCTGCAATTTTGCTTATTCTTTTTCCTGGCAATGTCTTCGCTGTAATTATTCGAAAAAAAAAAAAAAAAAAAAATTTTAAAAAAA]
consensusID : consensus_5579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 97 fasta sequence
[ATAGCTCATTTCAGTTGGAAGAAGAACCTCTCTAGATAGCTGACAATATATGTATATCTGCAATTCTGCTTATTCTTTTTGGGCAAAAAAAGGGGCC]
[+] EMBL CF301289 [ATAGCTCATTTCAGTTGGAAGAAGAACCTCTCTAGATAGCTGACAATATATGTATATCTGCAATTCTGCTTATTCTTTTTGGGCAAAAAAAGGGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5579#0 CCTTGTGGCAGCCAGAGAATTTGGATTTGAATTTTTCAAGAGAACACAATCAAGTGTCTT 60
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 TGTCAGGGAGAAATTCAGCTCTTCCAATGGCCCAGTTGAGAGGGAGTTCAAGATTCTCAA 120
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 TCTATTGGAGTTCAACAGCAAAAGAAAACGAATGTCAGTAATTCTGAAGGATGAAGATGG 180
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 GCAAATTCTTCTTTTTTGCAAAGGAGCAGATAGCATCATATTTGATAGACTGGCAAAAAA 240
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 TGGAAGGATGATTGAAGCTGATACGAGCAAGCATCTCAATGATTATGGTGAGGCAGGCTT 300
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 GCGGACACTGGCTCTATCATACAGAGTGCTCGATGAATCAGAATATTCCTCTTGGAATGC 360
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 TGAGTTTCTTAAAGCAAAGACCTCTATTGGACCTGACAGAGAATTGCAACTTGAGCGAGT 420
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 CTCAGAATTGATTGAAAGAGACCTGATCCTTGTTGGTGCAACTGCAGTAGAGGACAAACT 480
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 GCAAAGTGGGGTTCCTCAGTGCATAGATCGTTTGGCACAAGCAGGTCTCAAAATCTGGGT 540
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 TCTGACAGGTGATAAGATGGAAACTGCAATCAACATTGGATACGCATGCAGTTTACTGAG 600
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 GCAAGGCATGAGAAGGATATGTTTGTCAATACCCACTGATGACCAAGTAGCCCAGGATGC 660
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 AAATAAGGCTGCAAAGGAGAGTCTCATGTCGCAAATCGCAAATGGTTCACAAATGGTCAA 720
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 GCTAGAGAAGGATCCTGATGCAGCATTTGCTCTAGTTATAGATGGAAAAGCGCTCACATT 780
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 TGCTTTGGAAGATGACATGAAGCATATGTTCCTGAATCTTGCAATAGAGTGCGCTTCTGT 840
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 CATATGTTGCCGTGTGTCCCCAAAGCAAAAAGCACTGGTGACTCGACTGGTCAAAGAAGG 900
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 TATTGGAAAAACTACATTAGCAATAGGTGATGGTGCAAATGATGTAGGCATGATTCAAGA 960
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 AGCTGATATAGGAGTTGGTATAAGTGGGGTAGAGGGCATGCAGGCTGTGATGGCTAGTGA 1020
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 CTTTTCTATATCCCAATTTCGGTTCCTTGAGAGACTACTCGTAGTCCATGGCCATTGGTG 1080
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 CTATAAGAGAATTGCCCAAATGATCTGCTACTTCTTCTACAAGAATATTGCTTTTGGACT 1140
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 TACTATATTTTACTTTGAGGCATTTGCTGGATTTTCTGGTCAATCAGTTTATGATGATTG 1200
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 GTTTATGCTGCTCTTCAATGTTGTTCTTACCTCACTGCCTGTTATCTCACTTGGGGTATT 1260
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 TGAGCAGGATGTTTCATCTGAAATCTGCTTGCAGTTCCCGGCGTTATATCAGCAAGGACC 1320
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 GAGAAATCTTTTCTTCGATTGGTACCGGATTTTAGGATGGATGGCGAATGGCCTCTACTC 1380
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 ATCTCTGGCCATATTCTTTCTCAACATCTGTATATTCTATGATCAGGCAATCCGTTCTGG 1440
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 AGGACAGACTGCTGACATGGCTGCAGTGGGAACTACTATGTTCACCTGCATCATCTGGGC 1500
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 TGTCAACATGCAGATTGCGCTGACAATGAGCCATTTCACCTGGATTCAACATCTCTTTGT 1560
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 CTGGGGCAGCGTAGGTACTTGGTACCTCTTCATAATCGTCTATGGCTCGGCGTTGAGGTC 1620
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 CCGCGACAATTACCAGATTCTACTGGAGGTTCTTGGACCTGCTCCCTTGTACTGGGCAGC 1680
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 AACTCTTCTGGTGACTGCTGCTTGCAACATGCCCTACCTGATCCACATATCCTACCAGAG 1740
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 ATTGTGCAATCCACTTGATCACCATGTGATTCAAGAGATCAAGTACCTGAAGAAGGACGT 1800
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 CGAAGACCAAACGATGTGGAAGAGGGAGCGGTCGAAGGCCCGGCAGCGGACGAAGATTGG 1860
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 TTTCACCGCGAGGGTCGATGCGAAGATCAAGCAGATCAGGGGGAAGTTGCACAAGAAGGC 1920
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 CCCATCCCTAACCATCCATACTGTATCGTAGTGACATCTGAGTCATCTGACCGGCGTTTC 1980
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 GACAGTAGTTGTCACCTTACTTTTTTTCTCATGCAAGGCAGCGGTTTTTGGCTTCTCTCC 2040
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 CAGCTATACAGTGAAATTCTTTCTCTTCTTTTTTCTTTTTTTGGTCTTAATTTTCTGATC 2100
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 ATATTGGATTTTTTTTTCTCCGTTCGTGTAAGGAATGTTGGGGGTGTGATGGGTGGCATT 2160
consensus_5579#1 ------------------------------------------------------------
consensus_5579#0 TCCCCGAGTAGAAGTTCCAAAGCCAGCCATGTAAAAAGTATAGCTCATTTCAGTTGGAAG 2220
consensus_5579#1 ---------------------------------------ATAGCTCATTTCAGTTGGAAG 21
*********************
consensus_5579#0 AAGAACCTCTCTAGATAGCTGACAATATATGTATATCTGCAATTTTGCTTATTCTTTTTC 2280
consensus_5579#1 AAGAACCTCTCTAGATAGCTGACAATATATGTATATCTGCAATTCTGCTTATTCTTTTT- 80
******************************************** **************
consensus_5579#0 CTGGCAATGTCTTCGCTGTAATTATTCGAAAAAAAAAAAAAAAAAAAAATTTTAAAAAAA 2340
consensus_5579#1 -GGGCAAAAAAAGGGGCC------------------------------------------ 97
***** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||