cluster # 5580

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Oryza sativa
cluster # 5580 cluster # 5580 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5580#0 length = 1576 sequences # 1

consensus_5580#1 length = 201 sequences # 2

consensusID : consensus_5580#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1576
fasta sequence

                              [GGGAAAAAAAAAGATGGACAAGATGATGCGCACGGTGATCGCCGCCGTCGTGGTCGGCCTCCTCGCCGCGGCCCACACGGCCACCACCGCACCGGAACAATCCTACGGCGGCGCAACGGCGACCGTGGCGCCGAAGCAGCCGGCGGCGGGGGAAGACGTCAACAAGGCCTTGGCGGCGGAGACGGCGGCTGCCGAGGCGGAGGACGCCGCCGAGGAGGAGGACGCCGCGGCCGCTCTGGTCACCGGCTTCACCGCCGGCGCGGCGAACTCCGCGCCGGGGGTGACTGCCGTCATGAAGCCGGTGCTGGAGAAGGCGGACGCCGGGCAATTCTACCAGGACGTGCCATGGATTCCGGATCCCAACGACGAGGGGAATCCTCCCAAGTCTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGGCGGCGCTGGCGCGGCAGGATCATCGCCGCCGTCGAAGGAGGTGCAGGTGGATTACTACGCGACGACCCAGCCGAAGAAGCCGGAGGAGCCGCCGACGGTCGCGGCGGTCCAAAAGGACAATTGCGTCCCGCCGGCGGCGCCCAAGCCAGCTGTTCCGGCGACGCCGTCGACGTCTCCTCCTTCGAATAAGGAGTATGCTCCGGCGGCGCCAGGCGTGGTGCCGGTGAACCAGCCTTCTTCCCCGGCGGCGCCAGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGGCGCCAGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGACGGCGGTGCCAAAGCCTCCTTCCAATGACCCGTACGCCCCGGCGACCAGCAACACTCCGGCGGCGGAGGAGCAGAAGGACGGGCTGAACGAGAAGGCGATCAGCGACATCGTGAGGGAGCACAACATGTTCCGCACGAGGGAGCACGTGCCACCCATAGTGTGGAACGCGACGCTGGCGAAGTACGCGCAGGAGTACGCGGATTTGAGGAGAGGGGATTGCCAGCTGGAGCACTCTCATGGCCCCTACGGGGAGAACATGATGTTCGGGACGGGGAAGCAGTGGACGTGGAAGAAGACGGTGGACGAGTGGAGCGACGAGAAGAAGAGCTACGACTACAAATCCAACAGCTGCAAGGCCGGCGCCATGTGCACCCACTACACCGCCATCGTCTGGAAGAACACCACCGCCGTCGGCTGCGGCCGCGTCGTCTGCACCTCCGGCGACACCATCATGGTCTGCAGCTACTGGCCGCCCGGCAACTACGTCGGCGTCAAGCCCTACTAATTCATTCTTCATCATATCGATCGATCCACCACCCCTGCTGCTGCCCTCCATCTCTCACCCATCATCGATCGATCGTCATCCATGCATCCACCATCGTCGTCGTCTCATCTTATTAATAATATATATATGCATCAGATTCTTAATTATTATAACTAATTAATTAATGTTATCTTAACTTGTTAGTGATATGCCCTAGAGGCTATCATAGAGATGATTATATCACACACTATGTTTACATATTTATCCGACTTTGTTCCTTGAAATAGATAAACTTATTATTGGTTAATGAATGTGTGATTCTTTCAT]

[+] EMBL AK100940             [GGGAAAAAAAAAGATGGACAAGATGATGCGCACGGTGATCGCCGCCGTCGTGGTCGGCCTCCTCGCCGCGGCCCACACGGCCACCACCGCACCGGAACAATCCTACGGCGGCGCAACGGCGACCGTGGCGCCGAAGCAGCCGGCGGCGGGGGAAGACGTCAACAAGGCCTTGGCGGCGGAGACGGCGGCTGCCGAGGCGGAGGACGCCGCCGAGGAGGAGGACGCCGCGGCCGCTCTGGTCACCGGCTTCACCGCCGGCGCGGCGAACTCCGCGCCGGGGGTGACTGCCGTCATGAAGCCGGTGCTGGAGAAGGCGGACGCCGGGCAATTCTACCAGGACGTGCCATGGATTCCGGATCCCAACGACGAGGGGAATCCTCCCAAGTCTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGGCGGCGCTGGCGCGGCAGGATCATCGCCGCCGTCGAAGGAGGTGCAGGTGGATTACTACGCGACGACCCAGCCGAAGAAGCCGGAGGAGCCGCCGACGGTCGCGGCGGTCCAAAAGGACAATTGCGTCCCGCCGGCGGCGCCCAAGCCAGCTGTTCCGGCGACGCCGTCGACGTCTCCTCCTTCGAATAAGGAGTATGCTCCGGCGGCGCCAGGCGTGGTGCCGGTGAACCAGCCTTCTTCCCCGGCGGCGCCAGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGGCGCCAGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGACGGCGGTGCCAAAGCCTCCTTCCAATGACCCGTACGCCCCGGCGACCAGCAACACTCCGGCGGCGGAGGAGCAGAAGGACGGGCTGAACGAGAAGGCGATCAGCGACATCGTGAGGGAGCACAACATGTTCCGCACGAGGGAGCACGTGCCACCCATAGTGTGGAACGCGACGCTGGCGAAGTACGCGCAGGAGTACGCGGATTTGAGGAGAGGGGATTGCCAGCTGGAGCACTCTCATGGCCCCTACGGGGAGAACATGATGTTCGGGACGGGGAAGCAGTGGACGTGGAAGAAGACGGTGGACGAGTGGAGCGACGAGAAGAAGAGCTACGACTACAAATCCAACAGCTGCAAGGCCGGCGCCATGTGCACCCACTACACCGCCATCGTCTGGAAGAACACCACCGCCGTCGGCTGCGGCCGCGTCGTCTGCACCTCCGGCGACACCATCATGGTCTGCAGCTACTGGCCGCCCGGCAACTACGTCGGCGTCAAGCCCTACTAATTCATTCTTCATCATATCGATCGATCCACCACCCCTGCTGCTGCCCTCCATCTCTCACCCATCATCGATCGATCGTCATCCATGCATCCACCATCGTCGTCGTCTCATCTTATTAATAATATATATATGCATCAGATTCTTAATTATTATAACTAATTAATTAATGTTATCTTAACTTGTTAGTGATATGCCCTAGAGGCTATCATAGAGATGATTATATCACACACTATGTTTACATATTTATCCGACTTTGTTCCTTGAAATAGATAAACTTATTATTGGTTAATGAATGTGTGATTCTTTCAT]




>consensus_5580#0
GGGAAAAAAAAAGATGGACAAGATGATGCGCACGGTGATCGCCGCCGTCGTGGTCGGCCT
CCTCGCCGCGGCCCACACGGCCACCACCGCACCGGAACAATCCTACGGCGGCGCAACGGC
GACCGTGGCGCCGAAGCAGCCGGCGGCGGGGGAAGACGTCAACAAGGCCTTGGCGGCGGA
GACGGCGGCTGCCGAGGCGGAGGACGCCGCCGAGGAGGAGGACGCCGCGGCCGCTCTGGT
CACCGGCTTCACCGCCGGCGCGGCGAACTCCGCGCCGGGGGTGACTGCCGTCATGAAGCC
GGTGCTGGAGAAGGCGGACGCCGGGCAATTCTACCAGGACGTGCCATGGATTCCGGATCC
CAACGACGAGGGGAATCCTCCCAAGTCTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGG
CGGCGCTGGCGCGGCAGGATCATCGCCGCCGTCGAAGGAGGTGCAGGTGGATTACTACGC
GACGACCCAGCCGAAGAAGCCGGAGGAGCCGCCGACGGTCGCGGCGGTCCAAAAGGACAA
TTGCGTCCCGCCGGCGGCGCCCAAGCCAGCTGTTCCGGCGACGCCGTCGACGTCTCCTCC
TTCGAATAAGGAGTATGCTCCGGCGGCGCCAGGCGTGGTGCCGGTGAACCAGCCTTCTTC
CCCGGCGGCGCCAGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGGCGCC
AGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGACGGCGGTGCCAAAGCC
TCCTTCCAATGACCCGTACGCCCCGGCGACCAGCAACACTCCGGCGGCGGAGGAGCAGAA
GGACGGGCTGAACGAGAAGGCGATCAGCGACATCGTGAGGGAGCACAACATGTTCCGCAC
GAGGGAGCACGTGCCACCCATAGTGTGGAACGCGACGCTGGCGAAGTACGCGCAGGAGTA
CGCGGATTTGAGGAGAGGGGATTGCCAGCTGGAGCACTCTCATGGCCCCTACGGGGAGAA
CATGATGTTCGGGACGGGGAAGCAGTGGACGTGGAAGAAGACGGTGGACGAGTGGAGCGA
CGAGAAGAAGAGCTACGACTACAAATCCAACAGCTGCAAGGCCGGCGCCATGTGCACCCA
CTACACCGCCATCGTCTGGAAGAACACCACCGCCGTCGGCTGCGGCCGCGTCGTCTGCAC
CTCCGGCGACACCATCATGGTCTGCAGCTACTGGCCGCCCGGCAACTACGTCGGCGTCAA
GCCCTACTAATTCATTCTTCATCATATCGATCGATCCACCACCCCTGCTGCTGCCCTCCA
TCTCTCACCCATCATCGATCGATCGTCATCCATGCATCCACCATCGTCGTCGTCTCATCT
TATTAATAATATATATATGCATCAGATTCTTAATTATTATAACTAATTAATTAATGTTAT
CTTAACTTGTTAGTGATATGCCCTAGAGGCTATCATAGAGATGATTATATCACACACTAT
GTTTACATATTTATCCGACTTTGTTCCTTGAAATAGATAAACTTATTATTGGTTAATGAA
TGTGTGATTCTTTCAT

consensusID : consensus_5580#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 201
fasta sequence

                              [CTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGGCGGCGTGGCCGGGCAGGATCATCGCCNCGTCGAAGGAGGTGCAGGTGGATTACTACGCGACGACCCAGCCGAAGAAGCCGGAGAGCCGCCGACGTCGCGCGTCCAAAAGGACAATTGCGTCCGCCGGCNCCAAGCCAGCTGTTCGCGCNTCGAGCTCTCTCTCGATA]

[+] EMBL AA750064             [CTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGGCGGCGTGGCCGGGCAGGATCATCGCCNCGTCGAAGGAGGTGCAGGTGGATTACTACGCGACGACCCAGCCGAAGAAGCCGGAGAGCCGCCGACGTCGCGCGTCCAAAAGGACAATTGCGTCCGCCGGCNCCAAGCCAGCTGTTCGCGCNTCGAGCTCTCTCTCGATA]
[+] EMBL AA750022             [CTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGGCGGCGTGGCCGGGCAGGATCATCGCCNCGTCGAAGGAGGTGCAGGTGGATTACTACGCGACGACCCAGCCGAAGAAGCCGGAGAGCCGCCGACGTCGCGCGTCCAAAAGGACAATTGCGTCCGCCGGCNCCAAGCCAGCTGTTCGCGANTCGAGCTCTCTCTCGATA]




>consensus_5580#1
CTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGGCGGCGTGGCCGGGCAGGATCATCGCC
NCGTCGAAGGAGGTGCAGGTGGATTACTACGCGACGACCCAGCCGAAGAAGCCGGAGAGC
CGCCGACGTCGCGCGTCCAAAAGGACAATTGCGTCCGCCGGCNCCAAGCCAGCTGTTCGC
GCNTCGAGCTCTCTCTCGATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5580#0      GGGAAAAAAAAAGATGGACAAGATGATGCGCACGGTGATCGCCGCCGTCGTGGTCGGCCT 60
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      CCTCGCCGCGGCCCACACGGCCACCACCGCACCGGAACAATCCTACGGCGGCGCAACGGC 120
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      GACCGTGGCGCCGAAGCAGCCGGCGGCGGGGGAAGACGTCAACAAGGCCTTGGCGGCGGA 180
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      GACGGCGGCTGCCGAGGCGGAGGACGCCGCCGAGGAGGAGGACGCCGCGGCCGCTCTGGT 240
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      CACCGGCTTCACCGCCGGCGCGGCGAACTCCGCGCCGGGGGTGACTGCCGTCATGAAGCC 300
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      GGTGCTGGAGAAGGCGGACGCCGGGCAATTCTACCAGGACGTGCCATGGATTCCGGATCC 360
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      CAACGACGAGGGGAATCCTCCCAAGTCTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGG 420
consensus_5580#1      --------------------------CTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGG 34
                                                **********************************

consensus_5580#0      CGGCGCTGGCGCGGCAGGATCATCGCCGCCGTCGAAGGAGGTGCAGGTGGATTACTACGC 480
consensus_5580#1      CGGCG-TGGCCGGGCAGGATCATCGCCNC-GTCGAAGGAGGTGCAGGTGGATTACTACGC 92
                      ***** ****  *************** * ******************************

consensus_5580#0      GACGACCCAGCCGAAGAAGCCGGAGGAGCCGCCGACGGTCGCGGCGGTCCAAAAGGACAA 540
consensus_5580#1      GACGACCCAGCCGAAGAAGCCGGAG-AGCCGCCGACG-TCGCG--CGTCCAAAAGGACAA 148
                      ************************* *********** *****   **************

consensus_5580#0      TTGCGTCCCGCCGGCGGCGCCCAAGCCAGCTGTTCCGGCGACGCCGTCGACGTCTCCTCC 600
consensus_5580#1      TTGCGTCC-GCCGGC----NCCAAGCCAGCTGTTC--GCG----CNTCGAGCTCTCTCTC 197
                      ******** ******     ***************  ***    * ****  ****   *

consensus_5580#0      TTCGAATAAGGAGTATGCTCCGGCGGCGCCAGGCGTGGTGCCGGTGAACCAGCCTTCTTC 660
consensus_5580#1      GATA-------------------------------------------------------- 201
                                                                                  

consensus_5580#0      CCCGGCGGCGCCAGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGGCGCC 720
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      AGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGACGGCGGTGCCAAAGCC 780
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      TCCTTCCAATGACCCGTACGCCCCGGCGACCAGCAACACTCCGGCGGCGGAGGAGCAGAA 840
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      GGACGGGCTGAACGAGAAGGCGATCAGCGACATCGTGAGGGAGCACAACATGTTCCGCAC 900
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      GAGGGAGCACGTGCCACCCATAGTGTGGAACGCGACGCTGGCGAAGTACGCGCAGGAGTA 960
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      CGCGGATTTGAGGAGAGGGGATTGCCAGCTGGAGCACTCTCATGGCCCCTACGGGGAGAA 1020
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      CATGATGTTCGGGACGGGGAAGCAGTGGACGTGGAAGAAGACGGTGGACGAGTGGAGCGA 1080
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      CGAGAAGAAGAGCTACGACTACAAATCCAACAGCTGCAAGGCCGGCGCCATGTGCACCCA 1140
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      CTACACCGCCATCGTCTGGAAGAACACCACCGCCGTCGGCTGCGGCCGCGTCGTCTGCAC 1200
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      CTCCGGCGACACCATCATGGTCTGCAGCTACTGGCCGCCCGGCAACTACGTCGGCGTCAA 1260
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      GCCCTACTAATTCATTCTTCATCATATCGATCGATCCACCACCCCTGCTGCTGCCCTCCA 1320
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      TCTCTCACCCATCATCGATCGATCGTCATCCATGCATCCACCATCGTCGTCGTCTCATCT 1380
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      TATTAATAATATATATATGCATCAGATTCTTAATTATTATAACTAATTAATTAATGTTAT 1440
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      CTTAACTTGTTAGTGATATGCCCTAGAGGCTATCATAGAGATGATTATATCACACACTAT 1500
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      GTTTACATATTTATCCGACTTTGTTCCTTGAAATAGATAAACTTATTATTGGTTAATGAA 1560
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      TGTGTGATTCTTTCAT 1576
consensus_5580#1      ----------------