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Oryza sativa
cluster # 5583 cluster # 5583       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5583#0 length = 1605 sequences # 3  

consensusID : consensus_5583#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1605
fasta sequence
                              [AGCATGCAGGAGAAGATGATCAGGGAGGCAATGGCGGCAATGAACGGGCAGACCGCCGCCGACGTCGCCGTGAACCTCTACCCGTTCATCCGCAAGTACACCGACGGCCGCGTCGAGCGGCTGCTGACGAGCTCCTACGTGCCGGCGTCGGAGGACGCCGGCAGGGGCAGGGGCGGCGTCGGTGTGGCGACGAGGGACGTCGTCGTCGATCGTGACAACGGCGTGTCCGCGCGGCTGTTCCTCCCGTCCTCCGCGGCCACCGGCGGCGGCGGCGGTGGCAGGAGGCTACCCGTGGTGCTGTACTTCCACGGCGGCTCGTTCTGCACGGAGAGCGCCTTCTGCCGGACGTACCACCGGTACGCCAGCTCACTCGCGTCGCGCGCCGGGGCGCTCGTCGTGTCCGTCGAGTACCGCCTCGCGCCGGAGCACCCGATACCCGCGGCGTACGACGACGCGTGGGCGGCGTTCCGGTGGGTGGAGTCCCTGTCCGACCCGTGGCTCGCGGAGTACGGCGACCTGCGACGGACGTTCGTCGCCGGCGACAGCGCCGGCGGCAACATCGCCTACCACACGGTGGCACGCGCCGGCCGCGAGAACGTCGGCGGCGGCATCCAGGGCCTGATCATGGTGCACCCATTCTTCTGGGGGCCCGAGAGGCTGCCGTGCGAGACGGTCTGGGACGGCGCGTCGGTGTTCCCGGCGTTCGGCGTCGACTGGCTCTGGCCGTTCGTGACGGCCGGCCAGGCGGACAACGACGACCCCCGCATCGACCCCGCCGACGACGAGCTCGCGTCCCTGCCCTGCCGCCGCGTGCTCATGGCCGTGGCCGGGAGGGACACCCTGCGCGACCGCGGCCGCCGCCTCGCGTCCCGGATGCGCGGCGACGTGACGGTGGTGGAGTCGGAGGGCGAGGACCACGGCTTCCACCTCTACAGCCCGCTGCGCGCCACCAGCAAGAGGCTCATGCAGAGCATCGTGCAGTTCATCAACCAGCCGCCTAACCCATGCCCACCTCCGCCGGCGCCGGCGCCATCGCCGGCGATGAGGTGGCCGGCAACCATTCTTCCAGAGCTGGACGAGTGGTCGTCATCCACGTACAGTGACGACGCTGCCAATTCCTCGCAGATTCTTCTTGGCATGCCTGCTAGGGCATACAAGGCAATATTCGTTGATAGGATGGACAGGAAAGCTGCTAAGACTGGACGACTAAGCTCTAATCCGACGGTTAATGCGTCATTAAGCATTGGTCCCAGCGGGAAAGCATCAAAGACAAGCTGCTACGGGATGTCATTTGGCCGGACCAGAGCTTACAATTTCAGAGGGGTAGCAGCTGCAGGGAGCGGCCAGTGTCAGCCTCCCTTCCGTGGAGTGACGATTTGATGAGATTACCGTCAGCTAGCCTGGCTAATCTCTCCCAGAAGACGACGTGCATTTCATCGTGCCGTTCGAAGAATATATAATAGAAACAATAATAATCTTAATTATGACATGTTGACACTGTTCGATAAAAGTGCCCTATACAAATATACTGTCTTTCTTTTTTATTTTTACGGATTACTGATTCACATATTTCTTGTGCTCGATCTAAAAATTTAATCAAAGGAT]

[+] EMBL AK109058             [AGCATGCAGGAGAAGATGATCAGGGAGGCAATGGCGGCAATGAACGGGCAGACCGCCGCCGACGTCGCCGTGAACCTCTACCCGTTCATCCGCAAGTACACCGACGGCCGCGTCGAGCGGCTGCTGACGAGCTCCTACGTGCCGGCGTCGGAGGACGCCGGCAGGGGCAGGGGCGGCGTCGGTGTGGCGACGAGGGACGTCGTCGTCGATCGTGACAACGGCGTGTCCGCGCGGCTGTTCCTCCCGTCCTCCGCGGCCACCGGCGGCGGCGGCGGTGGCAGGAGGCTACCCGTGGTGCTGTACTTCCACGGCGGCTCGTTCTGCACGGAGAGCGCCTTCTGCCGGACGTACCACCGGTACGCCAGCTCACTCGCGTCGCGCGCCGGGGCGCTCGTCGTGTCCGTCGAGTACCGCCTCGCGCCGGAGCACCCGATACCCGCGGCGTACGACGACGCGTGGGCGGCGTTCCGGTGGGTGGAGTCCCTGTCCGACCCGTGGCTCGCGGAGTACGGCGACCTGCGACGGACGTTCGTCGCCGGCGACAGCGCCGGCGGCAACATCGCCTACCACACGGTGGCACGCGCCGGCCGCGAGAACGTCGGCGGCGGCATCCAGGGCCTGATCATGGTGCACCCATTCTTCTGGGGGCCCGAGAGGCTGCCGTGCGAGACGGTCTGGGACGGCGCGTCGGTGTTCCCGGCGTTCGGCGTCGACTGGCTCTGGCCGTTCGTGACGGCCGGCCAGGCGGACAACGACGACCCCCGCATCGACCCCGCCGACGACGAGCTCGCGTCCCTGCCCTGCCGCCGCGTGCTCATGGCCGTGGCCGGGAGGGACACCCTGCGCGACCGCGGCCGCCGCCTCGCGTCCCGGATGCGCGGCGACGTGACGGTGGTGGAGTCGGAGGGCGAGGACCACGGCTTCCACCTCTACAGCCCGCTGCGCGCCACCAGCAAGAGGCTCATGCAGAGCATCGTGCAGTTCATCAACCAGCCGCCTAGCCCATGCCCACCTCCGCCGGCGCCGGCGCCATCGCCGGCGATGAGGTGGCCGGCAACCATTCTTCCAGAGTTCGACGAGTGGTCG   TCGACGTACAGTGACGACACTGCCAATTCCTCGCAGATTCTTCTTGGCATGCCTGCTAGGGCATACAAGGCAATATTCGTTGATAGGATGGACAGGAAAGCTGCTAAGACTGGACGACTAAGCTCTAATCCGACGGTTAATGCGTCATTAAGCATTGGTCCCAGCGGGAAAGCATCAAAGACAAGCTGCTACGGGATGTCATTTGGCCGGACCAGAGCTTACAATTTCAGAGGGGTAGCAGCTGCAGGGAGCGGCCAGTGTCAGCCTCCCTTCCGTGGAGTGACGATTTGATGAGATTACCGTCAGCTAGCCTGGCTAATCTCTCCCAGAAGACGACGTGCATTTCATCGTGCCGTTCGAAGAATATATAATAGAAACAATAATAATCTTAATTATGACATGTTGACACTGTTCGATAAAAGTGCCCTATACAAATATACTGTCTTTCTTTTTTATTTTTACGGATTACTGATTCACATATTTCTTGTGCTCGATCTAAAAATTTAATCAAAGGAT]
[+] EMBL CB621565             [                                                                                                                                                                                                                                                                                                                                                                                                                           CGCCTCTCGCCGGAGCACCCGATACCCGCGGCGTACGACGACGCGTGGGCGGCGTTCCGGTGGGTGGAGTCCCTGTCCGACCCGTGGCTCGCGGAGTACGGCGACCTGCGACGGACGTTCGTCGCCGGCGACAGCGCCGGCGGCAACATCGCCTACCACACGGTGGCACGCGCCGGCCGCGAGAACGTCGGCGGCGGCATCCAGGGCCTGATCATGGTGCACCCATTCTTCTGGGGGCCCGAGAGGCTGCCGTGCGAGACGGTCTGGGACGGCGCGTCGGTGTTCCCGGCGTTCGGCGTCGACTGGCTCTGGCCGTTCGTGACGGCCGGCCAGGCGGACAACGACGACCCCCGCATCGACCCCGCCGACGACGAGCTCGCGTCCCTGCCCTGCCGCCGCGTGCTCATGGCCGTGGCCGGGAGGGACACCCTGCGCGACCGCGGCCGCCGCCTCGCGTCCCGGATGCGCGGCGACGTGACGGTGGTGGAGTCGGAGGGCGAGGACCACGGCTTCCACCTCTACAGCCCGCTGCGCGCCACCAGCAAGAGGCTCATGCAGAGCATCGTGCAGTTCATCAACCAGCCGCCTAACCCATGCCCACCTCCGCCGGCGCCGGCGCCATCGCCGGCGATGAGGTGGCCGGCAACCATTCTTCCAGAGCTGGACGAGTGGTCGTCATCCACGTACAGTGACGACGCTGCCAATTCCTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB621566             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCGCGTCCCTGCCCTGCCGCCGCGTGCTCATGGCCGTGGCCGGGAGGGACACCCTGCGCGACCGCGGCCGCCGCCTCGCGTCCCGGATGCGCGGCGACGTGACGGTGGTGGAGTCGGAGGGCGAGGACCACGGCTTCCACCTCTACAGCCCGCTGCGCGCCACCAGCAAGAGGCTCATGCAGAGCATCGTGCAGTTCATCAACCAGCCGCCTAACCCATGCCCACCTCCGCCGGCGCCGGCGCCATCGCCGGCGATGAGGTGGCCGGCAACCATTCTTCCAGAGCTGGACGAGTGGTCGTCATCCACGTACAGTGACGACGCTGCCAATTCCTCGCAGATTCTTCTTGGCATGCCTGCTAGGGCATACAAGGCAATATTCGTTGATAGGATGGACAGGAAAGCTGCTAAGACTGGACGACTAAGCTCTAATCCGACGGTTAATGCGTCATTAAGCATTGGTCCCAGCGGGAAAGCATCAAAGACAAGCTGCTACGGGATGTCATTTGGCCGGACCAGAGCTTACAATTTCAGAGGGGTAGCAGCTGCAGGGAGCGGCCAGTGTCAGCCTCCCTTCCGTGGAGTGACGATTTGATGAGATTACCGTCAGCTAGCCTGGCTAATCTCTCCCAGAAGACGACGTGCATTTCATCGTGCCGTTCGAAGAATATATAATAGAAACAATAATAATCTTAATTATGACATGTTGACACTGTTCGATAAAAGTGGCCTATACAAATATACTGTC                                                                        ]


>consensus_5583#0 AGCATGCAGGAGAAGATGATCAGGGAGGCAATGGCGGCAATGAACGGGCAGACCGCCGCC GACGTCGCCGTGAACCTCTACCCGTTCATCCGCAAGTACACCGACGGCCGCGTCGAGCGG CTGCTGACGAGCTCCTACGTGCCGGCGTCGGAGGACGCCGGCAGGGGCAGGGGCGGCGTC GGTGTGGCGACGAGGGACGTCGTCGTCGATCGTGACAACGGCGTGTCCGCGCGGCTGTTC CTCCCGTCCTCCGCGGCCACCGGCGGCGGCGGCGGTGGCAGGAGGCTACCCGTGGTGCTG TACTTCCACGGCGGCTCGTTCTGCACGGAGAGCGCCTTCTGCCGGACGTACCACCGGTAC GCCAGCTCACTCGCGTCGCGCGCCGGGGCGCTCGTCGTGTCCGTCGAGTACCGCCTCGCG CCGGAGCACCCGATACCCGCGGCGTACGACGACGCGTGGGCGGCGTTCCGGTGGGTGGAG TCCCTGTCCGACCCGTGGCTCGCGGAGTACGGCGACCTGCGACGGACGTTCGTCGCCGGC GACAGCGCCGGCGGCAACATCGCCTACCACACGGTGGCACGCGCCGGCCGCGAGAACGTC GGCGGCGGCATCCAGGGCCTGATCATGGTGCACCCATTCTTCTGGGGGCCCGAGAGGCTG CCGTGCGAGACGGTCTGGGACGGCGCGTCGGTGTTCCCGGCGTTCGGCGTCGACTGGCTC TGGCCGTTCGTGACGGCCGGCCAGGCGGACAACGACGACCCCCGCATCGACCCCGCCGAC GACGAGCTCGCGTCCCTGCCCTGCCGCCGCGTGCTCATGGCCGTGGCCGGGAGGGACACC CTGCGCGACCGCGGCCGCCGCCTCGCGTCCCGGATGCGCGGCGACGTGACGGTGGTGGAG TCGGAGGGCGAGGACCACGGCTTCCACCTCTACAGCCCGCTGCGCGCCACCAGCAAGAGG CTCATGCAGAGCATCGTGCAGTTCATCAACCAGCCGCCTAACCCATGCCCACCTCCGCCG GCGCCGGCGCCATCGCCGGCGATGAGGTGGCCGGCAACCATTCTTCCAGAGCTGGACGAG TGGTCGTCATCCACGTACAGTGACGACGCTGCCAATTCCTCGCAGATTCTTCTTGGCATG CCTGCTAGGGCATACAAGGCAATATTCGTTGATAGGATGGACAGGAAAGCTGCTAAGACT GGACGACTAAGCTCTAATCCGACGGTTAATGCGTCATTAAGCATTGGTCCCAGCGGGAAA GCATCAAAGACAAGCTGCTACGGGATGTCATTTGGCCGGACCAGAGCTTACAATTTCAGA GGGGTAGCAGCTGCAGGGAGCGGCCAGTGTCAGCCTCCCTTCCGTGGAGTGACGATTTGA TGAGATTACCGTCAGCTAGCCTGGCTAATCTCTCCCAGAAGACGACGTGCATTTCATCGT GCCGTTCGAAGAATATATAATAGAAACAATAATAATCTTAATTATGACATGTTGACACTG TTCGATAAAAGTGCCCTATACAAATATACTGTCTTTCTTTTTTATTTTTACGGATTACTG ATTCACATATTTCTTGTGCTCGATCTAAAAATTTAATCAAAGGAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)