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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence
[GGGTGAGCGGTGCCAGCCGCTGGACTTCTCCGGGGTGATCTACTACGACGCCGACGGCCGCCGCCTCGCGCACCCGCCGCCGCCGCGCTCCCCGATGCGCAGCCCTCTCCCGGTCTCCGGCAAGCTCGCCGCCAACGCCCGCGCCGCGTACTAGCTAGCCCGCGCCGTGTTCTTGGGCAGGGCAGCCTCTACGAGGATGAGCGGCGGCGGACGTCGGCGGTAAAACTCGCTCTTTGTTGCTCCGCGCTGGATGTTGGTACTCTGGTTCAGTCCGCCCCCCTCTAATATTTAAACCGCTCCCCTATTTTTTTTATGTGGTGGTTATCGCCAACAATTTGAACCAATAACGATACAAGCTACTCTTTTACTTCCTCTTCTTATCTCTTTTATAAATATTACCTATATCCCATTATTTTTTTATAAACTGTCACCTTATTTCCTTTCTCCTCTGCCCCTCCTATTTACATTTTAACCCGCTTTGCTTATAGTTTTCTCCGCGCCCACCATCATGTTGTAATATCCATGTTCCTCGTTTATACCTTCTCTCCTAGCTACCTATTCGTATTCCCCTTTTATAACATTATGCGCTAGTGTCTGCGATTTTTGTTCGACTCTACCCGGGCTGGCAGATGGCTTGGTGCGTGGTCGTTTGTACATAGTGTTGGTGTGATTTTTTAAATTTTTTGGTGTTGAAATCAATGAGTTTGGAAGTTTTGACATTGATTATAAGAGTGGATGGTGGTTGATA]
[+] EMBL CA758645 [GGGTGAGCGGTGCCAGCCGCTGGACTTCTCCGGGGTGATCTACTACGACGCCGACGGCCGCCGCCTCGCGCACCCGCCGCCGCCGCGCTCCCCGATGCGCAGCCCTCTCCCGGTCTCCGGCAAGCTCGCCGCCAACGCCCGCGCCGCGTACTAGCTAGCCCGCGCCGTGTTCTTGGGCAGGGCAGCCTCTACGAGGATGAGCGGCGGCGGACGTCGGCGGTAAAACTCGCTCTTTGTTGCTCCGCGCTGGATGTTGGTACTCTGGTTCAGTCCGCCCCCCTCTAATATTTAAACCGCTCCCCTATTTTTTTTATGTGGTGGTTATCGCCAACAATTTGAACCAATAACGATACAAGCTACTCTTTTACTTCCTCTTCTTATCTCTTTTATAAATATTACCTATATCCCATTATTTTTTTATAAACTGTCACCTTATTTCCTTTCTCCTCTGCCCCTCCTATTTACATTTTAACCCGCTTTGCTTATAGTTTTCTCCGCGCCCACCATCATGTTGTAATATCCATGTTCCTCGTTTATACCTTCTCTCCTAGCTACCTATTCGTATTCCCCTTTTATAACATTATGCGCTAGTGTCTGCGATTTTTGTTCGACTCTACCCGGGCTGGCAGATGGCTTGGTGCGTGGTCGTTTGTACATAGTGTTGGTGTGATTTTTTAAATTTTTTGGTGTTGAAATCAATGAGTTTGGAAGTTTTGACATTGATTATAAGAGTGGATGGTGGTTGATA]
consensusID : consensus_5584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence
[AGAAGCGCGCGAGAGAAGAGAAGAGAAGCTAAGCTAGCCATCAAGGTCTCGAAGAGGAAGCAAGAGCGCGAGGAGGAGAGGAGGAGGAGGCGGCGGCGGCGGCGATGGGGATGAGCATCGCGCAGGCGGTGGCGGCGCTGATGGGGACGTGCGCGAGGCGGCTGTCGCGGGCGGCGCGGCGGCTGCACCTGCGGCCGCGGGAGGGGATCGCGGCGTCGTTCTCGTCGCGCGCCATCGTGCCGTTCCTGGGCGGCGGAGGCGGCGGGAAGAAGGCTATCTCGTCGTCGAGGAGGAGGAGGAAGGCCGGGGCGGAGCTGAGCTTCCGCGCGGAGGACGGGGTGTGGAGGAAGGAGATACTGATGGGGGAGCGGTGCCAGCCGCTGGACTTCTCCGGCGTGATCTACTACGACGTCGAGGGGCGGCGCCTGGAGCAGCCGCCGCCGCCGCGCTCGCCGCTGCGCAGCCCGCTGCCGTCGTCCATCAAGCTCGCGGCCAACGCCGGCGGCGGCGGCGGCTACTAGCCGGAGATCGACACGTACACCCGCTCTCTCGCAGGCTTGCAGCAAATCTCTGAACTTTTGGAGCCAAAGCTTAGCCAGCCGCCTTCCTCTGCTTTCCTGCGACATAGTAATAGGTCTCTGCTTCTGATGATCTGTTCTTCT]
[+] EMBL AK105197 [AGAAGCGCGCGAGAGAAGAGAAGAGAAGCTAAGCTAGCCATCAAGGTCTCGAAGAGGAAGCAAGAGCGCGAGGAGGAGAGGAGGAGGAGGCGGCGGCGGCGGCGATGGGGATGAGCATCGCGCAGGCGGTGGCGGCGCTGATGGGGACGTGCGCGAGGCGGCTGTCGCGGGCGGCGCGGCGGCTGCACCTGCGGCCGCGGGAGGGGATCGCGGCGTCGTTCTCGTCGCGCGCCATCGTGCCGTTCCTGGGCGGCGGAGGCGGCGGGAAGAAGGCTATCTCGTCGTCGAGGAGGAGGAGGAAGGCCGGGGCGGAGCTGAGCTTCCGCGCGGAGGACGGGGTGTGGAGGAAGGAGATACTGATGGGGGAGCGGTGCCAGCCGCTGGACTTCTCCGGCGTGATCTACTACGACGTCGAGGGGCGGCGCCTGGAGCAGCCGCCGCCGCCGCGCTCGCCGCTGCGCAGCCCGCTGCCGTCGTCCATCAAGCTCGCGGCCAACGCCGGCGGCGGCGGCGGCTACTAGCCGGAGATCGACACGTACACCCGCTCTCTCGCAGGCTTGCAGCAAATCTCTGAACTTTTGGAGCCAAAGCTTAGCCAGCCGCCTTCCTCTGCTTTCCTGCGACATAGTAATAGGTCTCTGCTTCTGATGATCTGTTCTTCT]
consensusID : consensus_5584#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence
[ATCAAGGTCTCGAAGAGGAAGCAAGAGCGCGAGGAGGAGAGGAGGAGGAGGCGGCGGCGGCGGCGATGGGGATGAGCATCGTGCCGTTCCTGGGCGGCGGAGGCGGCGGGAAGAAGGCTATCTCGTCGTCGAGGAGGAGGAGGAAGGCCGGGGCGGAGTGAGCTTCCGCGCGGAGGACGGGGTGTGGAGGAAGGAGATACTGATGGGGGAGCGGTGCCAGCCGCTGGACTTCTCCGGCGTGATCTACTACGATGCCGAGGGGCGGCGCCTGGAGCANCCGCCGCCNCCGCGCTCGCCGCTGCGCANCCGCTTGCCGTNGTCCATCAAGATCGTGGCCAAAGCNGG]
[+] EMBL OSS15750A [ATCAAGGTCTCGAAGAGGAAGCAAGAGCGCGAGGAGGAGAGGAGGAGGAGGCGGCGGCGGCGGCGATGGGGATGAGCATCGTGCCGTTCCTGGGCGGCGGAGGCGGCGGGAAGAAGGCTATCTCGTCGTCGAGGAGGAGGAGGAAGGCCGGGGCGGAGTGAGCTTCCGCGCGGAGGACGGGGTGTGGAGGAAGGAGATACTGATGGGGGAGCGGTGCCAGCCGCTGGACTTCTCCGGCGTGATCTACTACGATGCCGAGGGGCGGCGCCTGGAGCANCCGCCGCCNCCGCGCTCGCCGCTGCGCANCCGCTTGCCGTNGTCCATCAAGATCGTGGCCAAAGCNGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5584#1 AGAAGCGCGCGAGAGAAGAGAAGAGAAGCTAAGCTAGCCATCAAGGTCTCGAAGAGGAAG 60
consensus_5584#2 ------------------------------------------------------------
consensus_5584#0 --GGGTGAGCGGTGCCAGCCGCTGGACTTCTCCGGGGTGATCTACTACGACGCCGACGGC 58
consensus_5584#1 CAAGAGCGCGAGGAGGAGAGGAGGAGGAGGCGGCGGCGGCGGCGATGGGGATGAGCATCG 120
consensus_5584#2 ------------------------------------------------------------
consensus_5584#0 CGCCGCCTCGCGCACCCGCCGCCGCCGCGCTCCCCGATGCGCAGCCCTCTCCCGGTCTCC 118
consensus_5584#1 CGCAGGCGGTGGCGGCGCTGATGGGGACGTGCGCGAGGCGGCTGTCGCGGGCGGCGCGGC 180
consensus_5584#2 -----------------------------------ATCAAGGTCTCGAAGAGGAAGCAAG 25
consensus_5584#0 GGCAAGCT-CGCCGCCAACGCCCGCGCCGCGTACTAGCTAGCCCGCGCCGTGTTCTTGGG 177
* * ** *
consensus_5584#1 GGCTGCACCTGCGGCCGCGGGAGGGGATCGCGG-CGTCGTTCTCGTCGCGCGCCATCGTG 239
consensus_5584#2 AGC-GCGAGGAGGAGAGGAGGAGGAGGCGGCGG-CGGCGGCGATGGGGATGAGCATCGTG 83
consensus_5584#0 CAGGGCAGCCTCTACGAGGATGAGCGGCGGCGGACGTCGGCGGTAAAACTCGCTCTT-TG 236
** * * **** ** ** * **
consensus_5584#1 CCGTTCCTGGGCGGCGGAGGCGGCGGGAAGAAGGCTATCTCGTCGTCGAGGAGGAGGAGG 299
consensus_5584#2 CCGTTCCTGGGCGGCGGAGGCGGCGGGAAGAAGGCTATCTCGTCGTCGAGGAGGAGGAGG 143
consensus_5584#0 TTGCTCC---GCGCTGGA--TGTTGGTACTCTGGTTCAGTC--CGCCCCCCTCTAATATT 289
* *** *** *** * ** * ** * ** ** * * *
consensus_5584#1 AAGGCCGGGGCGGAGCTGAGCTTCCGCGCGGAGGACGGGGTGTGGAGGAAGGAGATACTG 359
consensus_5584#2 AAGGCCGGGGCGGAG-TGAGCTTCCGCGCGGAGGACGGGGTGTGGAGGAAGGAGATACTG 202
consensus_5584#0 TAAACCGCTCCCCTATTTTTTTTATGTGGTGGTTATCGCCAACAATTTGAACCAATAACG 349
* *** * * ** * * * * * * *** *
consensus_5584#1 ATGGGGGA-GCGGTGCCAGCCGCTGGACTTCTCCGGCGTG-ATCTACTACG-ACGTCGAG 416
consensus_5584#2 ATGGGGGA-GCGGTGCCAGCCGCTGGACTTCTCCGGCGTG-ATCTACTACG-ATGCCGAG 259
consensus_5584#0 ATACAAGCTACTCTTTTACTTCCTCTTCTTATCTCTTTTATAAATATTACCTATATCCCA 409
** * * * * ** *** ** * * ** *** * *
consensus_5584#1 GGGCGGCGCCTGGAGCAGCCGCCGCCGCCGCGCTCGCCGCTGCGCAGCCCGCTGCCGTCG 476
consensus_5584#2 GGGCGGCGCCTGGAGCANCCGCCGCCNCCGCGCTCGCCGCTGCGCANCCGCTTGCCGTNG 319
consensus_5584#0 TTATTTTTTTATAAACTGTCACCTTATTTCCTTTCTCCTCTGCCCCTCCTATTTACATTT 469
* * * ** * ** ** **** * ** * * *
consensus_5584#1 T---CCATCAAGCTCGCGGCCAACGCCGGCGGCGGCGGCGGCTACTAGCCGGAGATCGAC 533
consensus_5584#2 T---CCATCAAGATCGTGGCCAAAGCNGG------------------------------- 345
consensus_5584#0 TAACCCGCTTTGCTTATAGTTTTCTCCGCGCCCACCATCATGTTGTAATATCCATGTTCC 529
* ** * * * * *
consensus_5584#1 ACGTACACCCGCTCTCTCGCAGGCTTGCAGCAAATCTCTGAACTTTTGGAGCCAAAGCTT 593
consensus_5584#2 ------------------------------------------------------------
consensus_5584#0 TCGTTTATACCTTCTCTCCTAGCTACCTATTCGTATTCCCCTTTTATAACATTATGCGCT 589
consensus_5584#1 AGC--CAGCCGCCTTCCTCTGCTTTCCTGCGACATAGTAATAGGTCTCTGCTTCTGATGA 651
consensus_5584#2 ------------------------------------------------------------
consensus_5584#0 AGTGTCTGCGATTTTTGTTCGACTCTACCCGGGCTGGCAGATGG-CTTGGTGCGTGGTCG 648
consensus_5584#1 TCTGTTCTTCT------------------------------------------------- 662
consensus_5584#2 ------------------------------------------------------------
consensus_5584#0 TTTGTACATAGTGTTGGTGTGATTTTTTAAATTTTTTGGTGTTGAAATCAATGAGTTTGG 708
consensus_5584#1 ----------------------------------------
consensus_5584#2 ----------------------------------------
consensus_5584#0 AAGTTTTGACATTGATTATAAGAGTGGATGGTGGTTGATA 748
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||