These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 486 fasta sequence [CGTGGCGACTTGAAGGACACGATGCGATTGTGGGATTGTTGCTGATGCCACCAAGTTTGCCATGAGTGAATGGAAAATGCTCTTGGCTCGACATGAGTCTGGTTGCTGATTGCGTGCCCCGAACCGAATTGTTGCGCTGGGTTTGTTTGTAAGTAAGCTAAGTAAATAGTGACACGATGGAGCTGCGAGAGGACAAGAATTTGATGTTGTTTATGCAAGGGGAAACCATCTAGGGTTAGTGATAATACTAATAAATTGAGGCCACACTTTGTGCATGTGCTGACCCTTGAATGATGAGAAATGCGAAATAATGATAGAAATGCAAAAGGTT-AAATAAGAAGAAAGTCCAATTTTGGAAGATATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATCAATCGCTCATATTCGATTTCTATAGAAGAGGGAAATGCTTTATCGAAGGAAATAAGAAAAAAGGGTATGTTGCTACTCTTTTGAAAAA] [+] EMBL BI802721 [CGTGGCGACTTGAAGGACACGATGCGATTGTGGGATTGTTGCTGATGCCACCAAGTTTGCCATGAGTGAATGGAAAATGCTCTTGGCTCGACATGAGTCTGGTTGCTGATTGCGTGCCCCGAACCGAATTGTTGCGCTGGGTTTGTTTGTAAGTAAGCTAAGTAAATAGTGACACGATGGAGCTGCGAGAGGACAAGAATTTGATGTTGTTTATGCAAGGGGAAACCATCTAGGGTTAGTGATAATACTAATAAATTGAGGCCACACTTTGTGCATGTGCTGACCCTTGAATGATGAGAAATGCGAAATAATGATAGAAATGCAAAAGGTT AAATAAGAAGAAAGTCCAATTTTGGAAGATATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATCAATCGCTCATATTCGATTTCTATAGAAGAGGGAAATGCTTTA ] [+] EMBL BI801395 [ AAAT C AAAGGTTAAAATAAGAAGAAAGTCC ATTTTGGAAGATATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATC ATCGCTCATATTCGATTTCTATAGAAGAGGGAAATGCTTTATCGAAGGAAATAAGAAAAAAGGGTATGTTGCTACTCTTTTGAAAAA] consensusID : consensus_5586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [AGGACACCGATCGATTGTGGATTTTGCTATCCACCATTTTCCATAGTAATGAAAATGCTCTTGGCTCGACATAGTCTGTTCTATTCGTCCCGAACCGAATTTTCGCTGGGTTGTTTGTAAGTAAGCTAAGTAAATAGTACACGATGGAGCTCGAGAGGACAGAATTTATTTTTTATCAAGGGAAAGAATCTAGGGTTAGTGAAAACTAATAAATTAGGCCAACTTTGTCATTCTACCCTTAATATAGAAATCGAAATAATATAGAAATCAAAAGGTTAAAATAAGAAGAAAGTCCAATTTTGGAAGATATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATCAATCGCTCATATTCGATTTCTATAGAAGAGGGAAATGCTTTATCGAAGG] [+] EMBL AU174933 [AGGACACCGATCGATTGTGGATTTTGCTATCCACCATTTTCCATAGTAATGAAAATGCTCTTGGCTCGACATAGTCTGTTCTATTCGTCCCGAACCGAATTTTCGCTGGGTTGTTTGTAAGTAAGCTAAGTAAATAGTACACGATGGAGCTCGAGAGGACAGAATTTATTTTTTATCAAGGGAAAGAATCTAGGGTTAGTGAAAACTAATAAATTAGGCCAACTTTGTCATTCTACCCTTAATATAGAAATCGAAATAATATAGAAATCAAAAGGTTAAAATAAGAAGAAAGTCCAATTTTGGAAGATATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATCAATCGCTCATATTCGATTTCTATAGAAGAGGGAAATGCTTTATCGAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5586#0 CGTGGCGACTTGAAGGACACGATGCGATTGTGGGATTGTTGCTGATGCCACCAAGTTTGC 60 consensus_5586#1 -------------AGGACACCGATCGATTGTGGATTT--TGCTAT--CCACCA--TTTTC 41 ******* ********* ** **** ****** *** * consensus_5586#0 CATGAGTGAATGGAAAATGCTCTTGGCTCGACATGAGTCTGGTTGCTGATTGCGTGCCCC 120 consensus_5586#1 CAT-AGTAA--TGAAAATGCTCTTGGCTCGACAT-AGTCTGTTC------TATTCGTCCC 91 *** *** * ********************** ****** * * * *** consensus_5586#0 GAACCGAATTGTTGCGCTGGGTTTGTTTGTAAGTAAGCTAAGTAAATAGTGACACGATGG 180 consensus_5586#1 GAACCGAATTTT--CGCTGGGTT-GTTTGTAAGTAAGCTAAGTAAATAGT-ACACGATGG 147 ********** * ********* ************************** ********* consensus_5586#0 AGCTGCGAGAGGACAAGAATTTGATGTTGTTTATGCAAGGGGAAACCATCTAGGGTTAGT 240 consensus_5586#1 AGCT-CGAGAGGACA-GAATT---TATTTTTTATC--AAGGGAAAGAATCTAGGGTTAGT 200 **** ********** ***** * ** ***** * ****** ************* consensus_5586#0 GATAATACTAATAAATTGAGGCCACACTTTGTGCATGTGCTGACCCTTGAATGATGAGAA 300 consensus_5586#1 G--AAAACTAATAAATT-AGGCCA-ACTTTGT---CATTCTACCCTTAATAT----AGAA 249 * ** *********** ****** ******* * ** ** * ** **** consensus_5586#0 ATGCGAAATAATGATAGAAATGCAAAAGGTTAAATAAGAAGAAAGTCCAATTTTGGAAGA 360 consensus_5586#1 AT-CGAAATAAT-ATAGAAATCAAAAGGTTAAAATAAGAAGAAAGTCCAATTTTGGAAGA 307 ** ********* ******** *** * * ***************************** consensus_5586#0 TATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATCAATCGCTCATATTCGATTTCTA 420 consensus_5586#1 TATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATCAATCGCTCATATTCGATTTCTA 367 ************************************************************ consensus_5586#0 TAGAAGAGGGAAATGCTTTATCGAAGGAAATAAGAAAAAAGGGTATGTTGCTACTCTTTT 480 consensus_5586#1 TAGAAGAGGGAAATGCTTTATCGAAGG--------------------------------- 394 *************************** consensus_5586#0 GAAAAA 486 consensus_5586#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||