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Oryza sativa
cluster # 5592 cluster # 5592       Sequences # 3       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5592#0 length = 2335 sequences # 1  
 consensus_5592#1 length = 811 sequences # 1  
consensus_5592#2 length = 796 sequences # 1  
consensusID : consensus_5592#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2335
fasta sequence 
                              [ATTTTCCCCCTCGGCCACCGAAACCTCTCTCTCCTCGAGCTAGACCACCATGGCGACGACGGTGGCGACGGCCATGCGACGCCGACGAAATCTCACTCCCTGCGACAGCCGCCTCGCCACCGCAGTCCCCCTGCTCGTGGCGTTCCTCCTCCTCCTCCACGCGCCGCCGCTCGCGGAAGCGCAGCCGCTGCCGTGGCAGATGTGCGACACCGCCGGCGGAAACTACACGGAGGGGAGCACCTACCAGGCCAACGTGCGCGCCCTCGCCAGCGCTCTCCCGGTGAACGCCTCCTCATCGCGCGCCCTCTTCGCCAAGGGCGCCGCCGGCGCGGCGCCGGACGTGGTGTACGCCATCGCGCTCTGCCGCGGCGACACCAACGCCTCCTCCTGCGCCGCCTGCGTCGCCACCGCCTTCCAGGACGCGCAGCAGCTGTGCGCGTTCAACAGGCGCGCCACCATGTTCGACGACCCCTGTATCCTCCGCTACTCCGACCAGGACATCCTCGCCAACGCCACCGACGGCCAGGGGAATTTCATCGCCTGGAACTACAACAACGTCAGCGCGGCGAGGGCGGCGGCGTTCGACGCCGCCTCCGGCCGGCTCGTCAACGCCACAGCCGGCTACGCGGCGGCGGACCCGGTCAGGCGGTTCGGCACGGGGGAGGTCGGGTTCGACGACGCGACGTACCCGAGGATCTTCTCGCTGGCGCAGTGCACGCCGGACTTGTCGGAGGCCGACTGCCGGAGCTGCCTCGGCCGCATAATCAGGTGGGTGCCCCAGTATTTCGCCGGGAAGCCCGGCGGCAGGGTCTTCGGCGTGCGGTGCAACTTCCGGTTCGAGTCGTACTCGTTCTTCTCCGGCCGGCCGCTGCTGCAGTTGCCGGGGCCGCCGCCGGCGCCGGCGCCGTCGCCGGCCAACATGGCGCCACCATCACCACCGGGGACCATGGGAGGAAGAACAAGACATAGAACAGGACGTGTCTTGGCCATTACTCTGCCTATTGCTGGAGCAATATTAGCACTCATTGTCCTGACATGCTTGTTTTTGGAGAAGGAGAACACCTGCAAGGAAGGCCTCACCAGTGCCATACTCAACAAACCCAGATGACATTCAGAGCATCGACTCGCTCCTTCTGGACCTATCAACGCTACGGGCTGCAACAGACAACTTCGCTGAAAGAAATAAGCTTGGCGAAGGAGGGTTCGGTATCGTTTACAAGGGAGTTCTTCCCGAAGGTCGAGAAATAGCTGTAAAAAGGCTCTCACAAAGCTCCAGACAGGGGATAGAAGAGCTGAAAACTGAGCTAGTTTTAGTTGCTAAACTTCGGCACAAGAACCTTGTGAGCCTTGTTGGTGTTTGCTTGGAAGAAGGCGAGAAACTACTGGTGTACGAGTACCTGCCAAATAAGAGCCTCGACACCATTCTTTTCGATTATGAGAAAAGCAAAGATCTTGACTGGGGGAAGAGGCTCAATATTGTAAGCGGAGTCGCTCGAGGCTTGCAATATCTCCACGAAGACTCTCAACTGAGGGTAGTTCATCGAGACCTCAAAGCAAGCAACGTGCTGCTGGACTTCGATCACAACCCAAAGATTTCAGACTTTGGGTTAGCGAAACTGTTTGAGTGGGATCAGACGCAAGACGTCACCAGTCACATCGCTGGAACATATGGATACATGGCACCGGAATACGCCATGCGTGGGCAGTATTCAGTCAAGTCGGACGCGTTCAGTTTTGGTGTTCTGATCATAGAGATTGTCACGGGAAGGAGAAACAGCAGCTTCTCCAACTCGGAGCAATCCATTGACCTCTTGAGTCTTGTATGGGAGCACTGGACAACGGGGACGATCGAGGAGCTGCTGGATCCGGCGATAGGCAGCCGTGCAGTGAACGTTCTGCTGAAGCTGATCAACATCGGGCTGCTCTGCGTCCAGGACAACCCGGCGGACAGGCCGGCGATGTCGGCGGTGAACGTGATGCTCAGCAGCGACACGGTCTCCCTCCAGGCCCCGTCGAGGCCAACGTTCTCCATTCAGGAGATGGACGGCGCCGCCGACACGGATCTCTACGAGTCGGGAGCGTACCCCCGGAGCGCGTTCCAGCCCACCGGCGACGGCAACACGAGAGCAGCGGCGGCGGCGTCGCCGAATGAGTTGTCGCTCTCGGAGCTGGAACCAAGATGAGCGTTTCGAATTTGGAGCGATTTGTGCGGATGACCGCAGGGTTTTTCTTCAATAACGAAAGAATCAACACGTGTGGCCTCTGCACTTGTTTGTCGATAATAATAAATAAATGCCCTCGTTGACGGTTGGTTGGAGCTCTGCATATAGTTGCA]

[+] EMBL AK100722             [ATTTTCCCCCTCGGCCACCGAAACCTCTCTCTCCTCGAGCTAGACCACCATGGCGACGACGGTGGCGACGGCCATGCGACGCCGACGAAATCTCACTCCCTGCGACAGCCGCCTCGCCACCGCAGTCCCCCTGCTCGTGGCGTTCCTCCTCCTCCTCCACGCGCCGCCGCTCGCGGAAGCGCAGCCGCTGCCGTGGCAGATGTGCGACACCGCCGGCGGAAACTACACGGAGGGGAGCACCTACCAGGCCAACGTGCGCGCCCTCGCCAGCGCTCTCCCGGTGAACGCCTCCTCATCGCGCGCCCTCTTCGCCAAGGGCGCCGCCGGCGCGGCGCCGGACGTGGTGTACGCCATCGCGCTCTGCCGCGGCGACACCAACGCCTCCTCCTGCGCCGCCTGCGTCGCCACCGCCTTCCAGGACGCGCAGCAGCTGTGCGCGTTCAACAGGCGCGCCACCATGTTCGACGACCCCTGTATCCTCCGCTACTCCGACCAGGACATCCTCGCCAACGCCACCGACGGCCAGGGGAATTTCATCGCCTGGAACTACAACAACGTCAGCGCGGCGAGGGCGGCGGCGTTCGACGCCGCCTCCGGCCGGCTCGTCAACGCCACAGCCGGCTACGCGGCGGCGGACCCGGTCAGGCGGTTCGGCACGGGGGAGGTCGGGTTCGACGACGCGACGTACCCGAGGATCTTCTCGCTGGCGCAGTGCACGCCGGACTTGTCGGAGGCCGACTGCCGGAGCTGCCTCGGCCGCATAATCAGGTGGGTGCCCCAGTATTTCGCCGGGAAGCCCGGCGGCAGGGTCTTCGGCGTGCGGTGCAACTTCCGGTTCGAGTCGTACTCGTTCTTCTCCGGCCGGCCGCTGCTGCAGTTGCCGGGGCCGCCGCCGGCGCCGGCGCCGTCGCCGGCCAACATGGCGCCACCATCACCACCGGGGACCATGGGAGGAAGAACAAGACATAGAACAGGACGTGTCTTGGCCATTACTCTGCCTATTGCTGGAGCAATATTAGCACTCATTGTCCTGACATGCTTGTTTTTGGAGAAGGAGAACACCTGCAAGGAAGGCCTCACCAGTGCCATACTCAACAAACCCAGATGACATTCAGAGCATCGACTCGCTCCTTCTGGACCTATCAACGCTACGGGCTGCAACAGACAACTTCGCTGAAAGAAATAAGCTTGGCGAAGGAGGGTTCGGTATCGTTTACAAGGGAGTTCTTCCCGAAGGTCGAGAAATAGCTGTAAAAAGGCTCTCACAAAGCTCCAGACAGGGGATAGAAGAGCTGAAAACTGAGCTAGTTTTAGTTGCTAAACTTCGGCACAAGAACCTTGTGAGCCTTGTTGGTGTTTGCTTGGAAGAAGGCGAGAAACTACTGGTGTACGAGTACCTGCCAAATAAGAGCCTCGACACCATTCTTTTCGATTATGAGAAAAGCAAAGATCTTGACTGGGGGAAGAGGCTCAATATTGTAAGCGGAGTCGCTCGAGGCTTGCAATATCTCCACGAAGACTCTCAACTGAGGGTAGTTCATCGAGACCTCAAAGCAAGCAACGTGCTGCTGGACTTCGATCACAACCCAAAGATTTCAGACTTTGGGTTAGCGAAACTGTTTGAGTGGGATCAGACGCAAGACGTCACCAGTCACATCGCTGGAACATATGGATACATGGCACCGGAATACGCCATGCGTGGGCAGTATTCAGTCAAGTCGGACGCGTTCAGTTTTGGTGTTCTGATCATAGAGATTGTCACGGGAAGGAGAAACAGCAGCTTCTCCAACTCGGAGCAATCCATTGACCTCTTGAGTCTTGTATGGGAGCACTGGACAACGGGGACGATCGAGGAGCTGCTGGATCCGGCGATAGGCAGCCGTGCAGTGAACGTTCTGCTGAAGCTGATCAACATCGGGCTGCTCTGCGTCCAGGACAACCCGGCGGACAGGCCGGCGATGTCGGCGGTGAACGTGATGCTCAGCAGCGACACGGTCTCCCTCCAGGCCCCGTCGAGGCCAACGTTCTCCATTCAGGAGATGGACGGCGCCGCCGACACGGATCTCTACGAGTCGGGAGCGTACCCCCGGAGCGCGTTCCAGCCCACCGGCGACGGCAACACGAGAGCAGCGGCGGCGGCGTCGCCGAATGAGTTGTCGCTCTCGGAGCTGGAACCAAGATGAGCGTTTCGAATTTGGAGCGATTTGTGCGGATGACCGCAGGGTTTTTCTTCAATAACGAAAGAATCAACACGTGTGGCCTCTGCACTTGTTTGTCGATAATAATAAATAAATGCCCTCGTTGACGGTTGGTTGGAGCTCTGCATATAGTTGCA]




>consensus_5592#0
ATTTTCCCCCTCGGCCACCGAAACCTCTCTCTCCTCGAGCTAGACCACCATGGCGACGAC
GGTGGCGACGGCCATGCGACGCCGACGAAATCTCACTCCCTGCGACAGCCGCCTCGCCAC
CGCAGTCCCCCTGCTCGTGGCGTTCCTCCTCCTCCTCCACGCGCCGCCGCTCGCGGAAGC
GCAGCCGCTGCCGTGGCAGATGTGCGACACCGCCGGCGGAAACTACACGGAGGGGAGCAC
CTACCAGGCCAACGTGCGCGCCCTCGCCAGCGCTCTCCCGGTGAACGCCTCCTCATCGCG
CGCCCTCTTCGCCAAGGGCGCCGCCGGCGCGGCGCCGGACGTGGTGTACGCCATCGCGCT
CTGCCGCGGCGACACCAACGCCTCCTCCTGCGCCGCCTGCGTCGCCACCGCCTTCCAGGA
CGCGCAGCAGCTGTGCGCGTTCAACAGGCGCGCCACCATGTTCGACGACCCCTGTATCCT
CCGCTACTCCGACCAGGACATCCTCGCCAACGCCACCGACGGCCAGGGGAATTTCATCGC
CTGGAACTACAACAACGTCAGCGCGGCGAGGGCGGCGGCGTTCGACGCCGCCTCCGGCCG
GCTCGTCAACGCCACAGCCGGCTACGCGGCGGCGGACCCGGTCAGGCGGTTCGGCACGGG
GGAGGTCGGGTTCGACGACGCGACGTACCCGAGGATCTTCTCGCTGGCGCAGTGCACGCC
GGACTTGTCGGAGGCCGACTGCCGGAGCTGCCTCGGCCGCATAATCAGGTGGGTGCCCCA
GTATTTCGCCGGGAAGCCCGGCGGCAGGGTCTTCGGCGTGCGGTGCAACTTCCGGTTCGA
GTCGTACTCGTTCTTCTCCGGCCGGCCGCTGCTGCAGTTGCCGGGGCCGCCGCCGGCGCC
GGCGCCGTCGCCGGCCAACATGGCGCCACCATCACCACCGGGGACCATGGGAGGAAGAAC
AAGACATAGAACAGGACGTGTCTTGGCCATTACTCTGCCTATTGCTGGAGCAATATTAGC
ACTCATTGTCCTGACATGCTTGTTTTTGGAGAAGGAGAACACCTGCAAGGAAGGCCTCAC
CAGTGCCATACTCAACAAACCCAGATGACATTCAGAGCATCGACTCGCTCCTTCTGGACC
TATCAACGCTACGGGCTGCAACAGACAACTTCGCTGAAAGAAATAAGCTTGGCGAAGGAG
GGTTCGGTATCGTTTACAAGGGAGTTCTTCCCGAAGGTCGAGAAATAGCTGTAAAAAGGC
TCTCACAAAGCTCCAGACAGGGGATAGAAGAGCTGAAAACTGAGCTAGTTTTAGTTGCTA
AACTTCGGCACAAGAACCTTGTGAGCCTTGTTGGTGTTTGCTTGGAAGAAGGCGAGAAAC
TACTGGTGTACGAGTACCTGCCAAATAAGAGCCTCGACACCATTCTTTTCGATTATGAGA
AAAGCAAAGATCTTGACTGGGGGAAGAGGCTCAATATTGTAAGCGGAGTCGCTCGAGGCT
TGCAATATCTCCACGAAGACTCTCAACTGAGGGTAGTTCATCGAGACCTCAAAGCAAGCA
ACGTGCTGCTGGACTTCGATCACAACCCAAAGATTTCAGACTTTGGGTTAGCGAAACTGT
TTGAGTGGGATCAGACGCAAGACGTCACCAGTCACATCGCTGGAACATATGGATACATGG
CACCGGAATACGCCATGCGTGGGCAGTATTCAGTCAAGTCGGACGCGTTCAGTTTTGGTG
TTCTGATCATAGAGATTGTCACGGGAAGGAGAAACAGCAGCTTCTCCAACTCGGAGCAAT
CCATTGACCTCTTGAGTCTTGTATGGGAGCACTGGACAACGGGGACGATCGAGGAGCTGC
TGGATCCGGCGATAGGCAGCCGTGCAGTGAACGTTCTGCTGAAGCTGATCAACATCGGGC
TGCTCTGCGTCCAGGACAACCCGGCGGACAGGCCGGCGATGTCGGCGGTGAACGTGATGC
TCAGCAGCGACACGGTCTCCCTCCAGGCCCCGTCGAGGCCAACGTTCTCCATTCAGGAGA
TGGACGGCGCCGCCGACACGGATCTCTACGAGTCGGGAGCGTACCCCCGGAGCGCGTTCC
AGCCCACCGGCGACGGCAACACGAGAGCAGCGGCGGCGGCGTCGCCGAATGAGTTGTCGC
TCTCGGAGCTGGAACCAAGATGAGCGTTTCGAATTTGGAGCGATTTGTGCGGATGACCGC
AGGGTTTTTCTTCAATAACGAAAGAATCAACACGTGTGGCCTCTGCACTTGTTTGTCGAT
AATAATAAATAAATGCCCTCGTTGACGGTTGGTTGGAGCTCTGCATATAGTTGCA

consensusID : consensus_5592#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 811
fasta sequence 
                              [GCGCGTTCAACAGGCGCGCCACCCTGTTCAACGACCCCTGCATCCTCCGATACTCCGACCAGGACATCCTCGCCAACGTCACCGATAACCGGGGCATGTTCGTCGCCTGGAACTACAACAACGTCAGCGCGGCGAAGGTGGCGGCGTACGACGCCGCCTCCGGCCGGCTTGTCAACGCCACGGCCGACTACGCAGCGGCGGACCCGGTGAGGCGGTTCGGCACGGGGGAGGTTGGGTTCGACGACGCGACGTACCCGAGGATCTTCTCGCTGGCGCAGTGCACGCCGGACATGTCGGAGGCCGACTGCCGGAGCTGCCTCGGCGACATAATCAGGAGGATGACGCCCAAGTACTTCGTCGGGAAGCCCGGAGGCAGGGTCTTCGGCGTTCGGTGCAACTTCCGGTTCGAGGCGTACTCGTTCTTCTCCGGCCGGCCGCTGCTGCAGCTGTCGGGGCCCTCGCCGCCGCCGGCTAACATGACGCCACCGGTGACCAGTGAAGGAAGAACAAGACATAGAACAGGACGGATCTTGGCCATTACTCTGCCTATTGCTGGAGCAGCATTAGTCTTCATTGTCCTGACATGCTTTTGTTTCCGGAGAAAGAGAACACCAGCAAATAAGGCCTCACCATTGCCATTCTCAACTAATCCGGATGATATTCAAAGCATCGACTCGCTCCTTCTCGACCTATCAACGCTACGGGCTGCAACAGACAACTTCGCTGACAGAAATAAGCTAGGCGAAGGAGGGTTCGGTGCCGTTTACAAGGGAGTTCTTTCTGAAGGTCAAGAAATAGCAGTGAAAAAGCT]

[+] EMBL CB622391             [GCGCGTTCAACAGGCGCGCCACCCTGTTCAACGACCCCTGCATCCTCCGATACTCCGACCAGGACATCCTCGCCAACGTCACCGATAACCGGGGCATGTTCGTCGCCTGGAACTACAACAACGTCAGCGCGGCGAAGGTGGCGGCGTACGACGCCGCCTCCGGCCGGCTTGTCAACGCCACGGCCGACTACGCAGCGGCGGACCCGGTGAGGCGGTTCGGCACGGGGGAGGTTGGGTTCGACGACGCGACGTACCCGAGGATCTTCTCGCTGGCGCAGTGCACGCCGGACATGTCGGAGGCCGACTGCCGGAGCTGCCTCGGCGACATAATCAGGAGGATGACGCCCAAGTACTTCGTCGGGAAGCCCGGAGGCAGGGTCTTCGGCGTTCGGTGCAACTTCCGGTTCGAGGCGTACTCGTTCTTCTCCGGCCGGCCGCTGCTGCAGCTGTCGGGGCCCTCGCCGCCGCCGGCTAACATGACGCCACCGGTGACCAGTGAAGGAAGAACAAGACATAGAACAGGACGGATCTTGGCCATTACTCTGCCTATTGCTGGAGCAGCATTAGTCTTCATTGTCCTGACATGCTTTTGTTTCCGGAGAAAGAGAACACCAGCAAATAAGGCCTCACCATTGCCATTCTCAACTAATCCGGATGATATTCAAAGCATCGACTCGCTCCTTCTCGACCTATCAACGCTACGGGCTGCAACAGACAACTTCGCTGACAGAAATAAGCTAGGCGAAGGAGGGTTCGGTGCCGTTTACAAGGGAGTTCTTTCTGAAGGTCAAGAAATAGCAGTGAAAAAGCT]




>consensus_5592#1
GCGCGTTCAACAGGCGCGCCACCCTGTTCAACGACCCCTGCATCCTCCGATACTCCGACC
AGGACATCCTCGCCAACGTCACCGATAACCGGGGCATGTTCGTCGCCTGGAACTACAACA
ACGTCAGCGCGGCGAAGGTGGCGGCGTACGACGCCGCCTCCGGCCGGCTTGTCAACGCCA
CGGCCGACTACGCAGCGGCGGACCCGGTGAGGCGGTTCGGCACGGGGGAGGTTGGGTTCG
ACGACGCGACGTACCCGAGGATCTTCTCGCTGGCGCAGTGCACGCCGGACATGTCGGAGG
CCGACTGCCGGAGCTGCCTCGGCGACATAATCAGGAGGATGACGCCCAAGTACTTCGTCG
GGAAGCCCGGAGGCAGGGTCTTCGGCGTTCGGTGCAACTTCCGGTTCGAGGCGTACTCGT
TCTTCTCCGGCCGGCCGCTGCTGCAGCTGTCGGGGCCCTCGCCGCCGCCGGCTAACATGA
CGCCACCGGTGACCAGTGAAGGAAGAACAAGACATAGAACAGGACGGATCTTGGCCATTA
CTCTGCCTATTGCTGGAGCAGCATTAGTCTTCATTGTCCTGACATGCTTTTGTTTCCGGA
GAAAGAGAACACCAGCAAATAAGGCCTCACCATTGCCATTCTCAACTAATCCGGATGATA
TTCAAAGCATCGACTCGCTCCTTCTCGACCTATCAACGCTACGGGCTGCAACAGACAACT
TCGCTGACAGAAATAAGCTAGGCGAAGGAGGGTTCGGTGCCGTTTACAAGGGAGTTCTTT
CTGAAGGTCAAGAAATAGCAGTGAAAAAGCT

consensusID : consensus_5592#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 796
fasta sequence 
                              [CAAACGCAAGACGTCACCAGTCACATTGCTGGAACATACGGATACATGGCGCCGGAGTACGCCATGCGTGGGCAGTATTCAGTCAAGTCGGACGCGTTCAGTTTCGGAGTTATGATCCTAGAGATTGTCACGGGAAGGAGAAACAGCAGCTTCTCCAACTCGGAGCAATCCATTGACCTCTTGAGTCTTGTCTGGGAGCACTGGACAACGGGGACGATCGAGGAGCTGCTGGATCCGGCGATGCGCGGCCGTTCAGCTGACGATCTGCTGAAGCTGATCAACATCGGGCTGCTCTGCGTCCAGGACAACCCGGCGGACAGGCCGACGATGTCGGCGGTGAGCGTGATGCTCAGCAGCGAGACGTTCTCCATCCAGGCCCCGTCGAGGCCAACGTTCTGCATCCAGGAGACGGACAGCGCCGCCGACACGGATCTCTACTCGAGCGCGCTTCGGTCCACCGGCGACAGCAAGACGAGAGCAGTGGCGTCGCCGAATGAGGTGTCGCTCACCGAGCTGGAGCCAAGATGAGTGTTTGTTGGAGCGATTTGTGCAGATGAGTAGATGACTGCATGATCTTCTTCTCAATAACTAAAGAATCAACTCATGGGTCATGGCCTCTGCACTCGTTTGTCTATAATAAATGAATAGATAAAAGGAAGTGTCATAGTGGTTATGCAGAATGTAACTCAGTTTGATACTGGTTGTAACTCTGCAAAGATTGTTCCCACCTGTATATTATTATAGTTACACCGTCCATGTCGAAGACAGCAATCAGAATAATTACACCTGTATATGG]

[-] EMBL CB622392             [CAAACGCAAGACGTCACCAGTCACATTGCTGGAACATACGGATACATGGCGCCGGAGTACGCCATGCGTGGGCAGTATTCAGTCAAGTCGGACGCGTTCAGTTTCGGAGTTATGATCCTAGAGATTGTCACGGGAAGGAGAAACAGCAGCTTCTCCAACTCGGAGCAATCCATTGACCTCTTGAGTCTTGTCTGGGAGCACTGGACAACGGGGACGATCGAGGAGCTGCTGGATCCGGCGATGCGCGGCCGTTCAGCTGACGATCTGCTGAAGCTGATCAACATCGGGCTGCTCTGCGTCCAGGACAACCCGGCGGACAGGCCGACGATGTCGGCGGTGAGCGTGATGCTCAGCAGCGAGACGTTCTCCATCCAGGCCCCGTCGAGGCCAACGTTCTGCATCCAGGAGACGGACAGCGCCGCCGACACGGATCTCTACTCGAGCGCGCTTCGGTCCACCGGCGACAGCAAGACGAGAGCAGTGGCGTCGCCGAATGAGGTGTCGCTCACCGAGCTGGAGCCAAGATGAGTGTTTGTTGGAGCGATTTGTGCAGATGAGTAGATGACTGCATGATCTTCTTCTCAATAACTAAAGAATCAACTCATGGGTCATGGCCTCTGCACTCGTTTGTCTATAATAAATGAATAGATAAAAGGAAGTGTCATAGTGGTTATGCAGAATGTAACTCAGTTTGATACTGGTTGTAACTCTGCAAAGATTGTTCCCACCTGTATATTATTATAGTTACACCGTCCATGTCGAAGACAGCAATCAGAATAATTACACCTGTATATGG]




>consensus_5592#2
CAAACGCAAGACGTCACCAGTCACATTGCTGGAACATACGGATACATGGCGCCGGAGTAC
GCCATGCGTGGGCAGTATTCAGTCAAGTCGGACGCGTTCAGTTTCGGAGTTATGATCCTA
GAGATTGTCACGGGAAGGAGAAACAGCAGCTTCTCCAACTCGGAGCAATCCATTGACCTC
TTGAGTCTTGTCTGGGAGCACTGGACAACGGGGACGATCGAGGAGCTGCTGGATCCGGCG
ATGCGCGGCCGTTCAGCTGACGATCTGCTGAAGCTGATCAACATCGGGCTGCTCTGCGTC
CAGGACAACCCGGCGGACAGGCCGACGATGTCGGCGGTGAGCGTGATGCTCAGCAGCGAG
ACGTTCTCCATCCAGGCCCCGTCGAGGCCAACGTTCTGCATCCAGGAGACGGACAGCGCC
GCCGACACGGATCTCTACTCGAGCGCGCTTCGGTCCACCGGCGACAGCAAGACGAGAGCA
GTGGCGTCGCCGAATGAGGTGTCGCTCACCGAGCTGGAGCCAAGATGAGTGTTTGTTGGA
GCGATTTGTGCAGATGAGTAGATGACTGCATGATCTTCTTCTCAATAACTAAAGAATCAA
CTCATGGGTCATGGCCTCTGCACTCGTTTGTCTATAATAAATGAATAGATAAAAGGAAGT
GTCATAGTGGTTATGCAGAATGTAACTCAGTTTGATACTGGTTGTAACTCTGCAAAGATT
GTTCCCACCTGTATATTATTATAGTTACACCGTCCATGTCGAAGACAGCAATCAGAATAA
TTACACCTGTATATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5592#0      ATTTTCCCCCTCGGCCACCGAAACCTCTCTCTCCTCGAGCTAGACCACCATGGCGACGAC 60
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      GGTGGCGACGGCCATGCGACGCCGACGAAATCTCACTCCCTGCGACAGCCGCCTCGCCAC 120
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      CGCAGTCCCCCTGCTCGTGGCGTTCCTCCTCCTCCTCCACGCGCCGCCGCTCGCGGAAGC 180
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      GCAGCCGCTGCCGTGGCAGATGTGCGACACCGCCGGCGGAAACTACACGGAGGGGAGCAC 240
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      CTACCAGGCCAACGTGCGCGCCCTCGCCAGCGCTCTCCCGGTGAACGCCTCCTCATCGCG 300
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      CGCCCTCTTCGCCAAGGGCGCCGCCGGCGCGGCGCCGGACGTGGTGTACGCCATCGCGCT 360
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      CTGCCGCGGCGACACCAACGCCTCCTCCTGCGCCGCCTGCGTCGCCACCGCCTTCCAGGA 420
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      CGCGCAGCAGCTGTGCGCGTTCAACAGGCGCGCCACCATGTTCGACGACCCCTGTATCCT 480
consensus_5592#1      --------------GCGCGTTCAACAGGCGCGCCACCCTGTTCAACGACCCCTGCATCCT 46
consensus_5592#2      ---------------CAAACGCAAGACGT-CACCAGTCACATTGCTGGAACATACGGATA 44
                                     *     *** * *  * ***      *    *   * *       

consensus_5592#0      CCGCTACTCCGACCAGGACATCC-TCGCCAACGCCACCGACGGCCAGGGGAATTTCATCG 539
consensus_5592#1      CCGATACTCCGACCAGGACATCC-TCGCCAACGTCACCGATAACCGGGGCATGTTCGTCG 105
consensus_5592#2      CATGGCGCCGGAGTACGCCATGCGTGGGCAGTATT-CAGTCAAGTCGGACGCGTTCAGT- 102
                      *       * **  * * *** * * * **      * *       **     ***    

consensus_5592#0      CCTGGAACTACAAC----AACGTCAGCGCGGCGAGG-GCGGCGGCGTTCGACGCCGCCTC 594
consensus_5592#1      CCTGGAACTACAAC----AACGTCAGCGCGGCGAAG-GTGGCGGCGTACGACGCCGCCTC 160
consensus_5592#2      TTCGGAGTTATGATCCTAGAGATTGTCACGGGAAGGAGAAACAGCA-GCTTCTCCAACTC 161
                         ***  **  *      *  *   * ***  * * *   * **   *  * **  ***

consensus_5592#0      CGGCCGGCTCGTCAACGCCACAGCCGGCTACGCGGCGGCGGACCCGGTCAGGCGGTTCGG 654
consensus_5592#1      CGGCCGGCTTGTCAACGCCACGGCCGACTACGCAGCGGCGGACCCGGTGAGGCGGTTCGG 220
consensus_5592#2      GGAGCAATCCATTGACCTCTTGA---GTCTTGTCTGGGAGCACTGGACAACG-GGGACGA 217
                       *  *      *  **  *            *    ** * **  *   * * **  ** 

consensus_5592#0      CACGGGGGAGGTCGGGTTCGACGACGCGACGT-----ACCCGAGGATCTTCTC--GCTGG 707
consensus_5592#1      CACGGGGGAGGTTGGGTTCGACGACGCGACGT-----ACCCGAGGATCTTCTC--GCTGG 273
consensus_5592#2      TCGAGGAGCTGCTGGATCCGGCGATGCGCGGCCGTTCAGCTGACGATCTGCTGAAGCTGA 277
                          ** *  *  ** * ** *** ***  *      * * ** ***** **   **** 

consensus_5592#0      CGCAGTGCACGCCGGAC-TTGTCGGAGGCCGACTGCCGGAGCTGCCTCGGCCGCATAATC 766
consensus_5592#1      CGCAGTGCACGCCGGAC-ATGTCGGAGGCCGACTGCCGGAGCTGCCTCGGCGACATAATC 332
consensus_5592#2      TCAACATCGGGCTGCTCTGCGTCCAGGACAACCCGGCGGACAGGC--CGACGATGTCGGC 335
                         *   *  ** *  *   ***   * *   * * ****   **  ** *    *   *

consensus_5592#0      AG-GTGGGTG---CCCC--AGTATTTCGCCGGGAAGCCCGGCGGCAGGGTCTTCGGCGTG 820
consensus_5592#1      AG-GAGGATGACGCCCA--AGTACTTCGTCGGGAAGCCCGGAGGCAGGGTCTTCGGCGTT 389
consensus_5592#2      GGTGAGCGTGATGCTCAGCAGCGAGACGTTCTCCATCCAGGCCCCGTCGAGGCCAACGTT 395
                       * * *  **   * *   **     **      * ** **   *   *    *  *** 

consensus_5592#0      CGGTG--CAACTTCCGGTTCGAGTCGTACTCGTTCTTCTCCGGCCGGCCGCTGCTGCAGT 878
consensus_5592#1      CGGTG--CAACTTCCGGTTCGAGGCGTACTCGTTCTTCTCCGGCCGGCCGCTGCTGCAGC 447
consensus_5592#2      CTGCATCCAGGAGACGGACAGCGCCGCCGACACGGATCTCTACTCGAGCGCGCTTCGGTC 455
                      * *    **     ***   * * **    *     ****    **  ***   *     

consensus_5592#0      TGCCGGGGCCGCC--GCCGGCGCCGGCGCCGTCGCCGGCCAACATGGCGC-CACC-ATCA 934
consensus_5592#1      TGTCGGGGCCCTC--GCCG------------CCGCCGGCTAACATGACGC-CAC------ 486
consensus_5592#2      CACCGGCGACAGCAAGACGAGAGCAGTGGCGTCGCCGAATGAGGTGTCGCTCACCGAGCT 515
                         *** * *  *  * **             *****    *  ** *** ***      

consensus_5592#0      CCACCGGGGACCATGGGAGGA-AGAACAAGACATAGAACAGGACGTGT--CTTGGCCATT 991
consensus_5592#1      ----CGGTGACCAGTGAAGGA-AGAACAAGACATAGAACAGGACGGAT--CTTGGCCATT 539
consensus_5592#2      GGAGCCAAGATGAGTGTTTGTTGGAGCGATTTGTGCAGATGAGTAGATGACTGCATGATC 575
                          *   **  *  *   *   ** * *    *  *   *      *  **     ** 

consensus_5592#0      ACTCTGCCTATTGCTGGAGCAATA--TTAGCACTCATTGTCCTGACATGCTT--GTTTTT 1047
consensus_5592#1      ACTCTGCCTATTGCTGGAGCAGCA--TTAGTCTTCATTGTCCTGACATGCTTTTGTTTCC 597
consensus_5592#2      TTCTTCTCAATAACTAAAGAATCAACTCATGGGTCATGGCCTCTGCACTCGTTTGTCTAT 635
                          *  * **  **  ** *  *  * *    **** * *    **  * *  ** *  

consensus_5592#0      GGAGAAGGAGAACACCTGCAAGGAAGGCCTCACCAGT--GCCATACTCAACAAACCCAGA 1105
consensus_5592#1      GGAGAAAGAGAACACCAGCAAATAAGGCCTCACCATT--GCCATTCTCAACTAATCCGGA 655
consensus_5592#2      AATAAATGAATAGATAAAAGGAAGTGTCATAGTGGTTATGCAGAATGTAACTCAGTTTGA 695
                          ** **  * *           * * *      *  **       ***  *    **

consensus_5592#0      TGACATTCAGAGCATCGACTCGCTCCTTCTGGACCTATCAACGCTACGGGCTGCAACAGA 1165
consensus_5592#1      TGATATTCAAAGCATCGACTCGCTCCTTCTCGACCTATCAACGCTACGGGCTGCAACAGA 715
consensus_5592#2      TACTGGTTGTAACTCTGCAAAGATTGTTCCC-ACCTGTATATTATTATAGTTACACC-GT 753
                      *     *   * *   *    * *  ***   **** *  *   *    * * ** * * 

consensus_5592#0      CAACTTCGCTGAAAGAAATAAGC-TTGGCGAAGGAGGGTTCGGTATCGTTTACAAGGGAG 1224
consensus_5592#1      CAACTTCGCTGACAGAAATAAGC-TAGGCGAAGGAGGGTTCGGTGCCGTTTACAAGGGAG 774
consensus_5592#2      CCATGTCGAAGACAGCAATCAGAATAATTACACCTGTATATGG----------------- 796
                      * *  ***  ** ** *** **  *      *   *  *  **                 

consensus_5592#0      TTCTTCCCGAAGGTCGAGAAATAGCTGTAAAAAGGCTCTCACAAAGCTCCAGACAGGGGA 1284
consensus_5592#1      TTCTTTCTGAAGGTCAAGAAATAGCAGTGAAAAAGCT----------------------- 811
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      TAGAAGAGCTGAAAACTGAGCTAGTTTTAGTTGCTAAACTTCGGCACAAGAACCTTGTGA 1344
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      GCCTTGTTGGTGTTTGCTTGGAAGAAGGCGAGAAACTACTGGTGTACGAGTACCTGCCAA 1404
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      ATAAGAGCCTCGACACCATTCTTTTCGATTATGAGAAAAGCAAAGATCTTGACTGGGGGA 1464
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      AGAGGCTCAATATTGTAAGCGGAGTCGCTCGAGGCTTGCAATATCTCCACGAAGACTCTC 1524
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      AACTGAGGGTAGTTCATCGAGACCTCAAAGCAAGCAACGTGCTGCTGGACTTCGATCACA 1584
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      ACCCAAAGATTTCAGACTTTGGGTTAGCGAAACTGTTTGAGTGGGATCAGACGCAAGACG 1644
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      TCACCAGTCACATCGCTGGAACATATGGATACATGGCACCGGAATACGCCATGCGTGGGC 1704
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      AGTATTCAGTCAAGTCGGACGCGTTCAGTTTTGGTGTTCTGATCATAGAGATTGTCACGG 1764
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      GAAGGAGAAACAGCAGCTTCTCCAACTCGGAGCAATCCATTGACCTCTTGAGTCTTGTAT 1824
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      GGGAGCACTGGACAACGGGGACGATCGAGGAGCTGCTGGATCCGGCGATAGGCAGCCGTG 1884
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      CAGTGAACGTTCTGCTGAAGCTGATCAACATCGGGCTGCTCTGCGTCCAGGACAACCCGG 1944
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      CGGACAGGCCGGCGATGTCGGCGGTGAACGTGATGCTCAGCAGCGACACGGTCTCCCTCC 2004
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      AGGCCCCGTCGAGGCCAACGTTCTCCATTCAGGAGATGGACGGCGCCGCCGACACGGATC 2064
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      TCTACGAGTCGGGAGCGTACCCCCGGAGCGCGTTCCAGCCCACCGGCGACGGCAACACGA 2124
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      GAGCAGCGGCGGCGGCGTCGCCGAATGAGTTGTCGCTCTCGGAGCTGGAACCAAGATGAG 2184
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      CGTTTCGAATTTGGAGCGATTTGTGCGGATGACCGCAGGGTTTTTCTTCAATAACGAAAG 2244
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      AATCAACACGTGTGGCCTCTGCACTTGTTTGTCGATAATAATAAATAAATGCCCTCGTTG 2304
consensus_5592#1      ------------------------------------------------------------
consensus_5592#2      ------------------------------------------------------------
                                                                                  

consensus_5592#0      ACGGTTGGTTGGAGCTCTGCATATAGTTGCA 2335
consensus_5592#1      -------------------------------
consensus_5592#2      -------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)