These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 720 fasta sequence [ATCATATTGTAAAATCATGACGTCCTTAGGCTCAAAAGATTTGTCTCACAATTTACATGCAAACTGTGCAATTGATTTTTTTCGTTCATATTTAATGCTCTATACATATGTCCAAACATTTAATGTGACGGAATTTTTAGAAGTTTGAAGGGAACTTAAATACTGCCTAAATCAATAAGAACAATGGTGTTACAATAAAAAATAATAGGTATACAGTGACTAGACTAGAGGGCAATTGGGATTTGGGATTGCTTCATTTATGATGTATCCAAGGCCAACTATGTTGAACGACCCCATGAATGAGTAAAACCCCACAGCTCAACATTCTTCAGTTCAAAATCTGGACTATGAGCCAAGCATGAGTTCCCAAATGTCTGACATGATCCACTGGTTCCATGTAACAAATCTTCATCGAGGCACAACGCGAAACTCCCACCTCCTCCAAATGCCAAAGCATCATTCAAGCATAAGTAGTAGTACCTGTTGGCACCGGTTGGTCTGAAAAGCCTAGGTTCACCATAAATCGTTGTGAATACAAATGTCTGATTAGTTCCCTGGTATTTTCTTTTCTCTGTAGGCCTGAGAGGACCATTTAACAAGCCACCAAACACAGCCCCCCGCATGTCTCCAACAATCAATAGGCATGGACCCTGGAGATTTTCACTCCTACGGAAAAGTGTTCTTAGCGATGTTCCATGCTTCCAAGTGCTGCACTATATA] [+] EMBL CB629874 [ATCATATTGTAAAATCATGACGTCCTTAGGCTCAAAAGATTTGTCTCACAATTTACATGCAAACTGTGCAATTGATTTTTTTCGTTCATATTTAATGCTCTATACATATGTCCAAACATTTAATGTGACGGAATTTTTAGAAGTTTGAAGGGAACTTAAATACTGCCTAAATCAATAAGAACAATGGTGTTACAATAAAAAATAATAGGTATACAGTGACTAGACTAGAGGGCAATTGGGATTTGGGATTGCTTCATTTATGATGTATCCAAGGCCAACTATGTTGAACGACCCCATGAATGAGTAAAACCCCACAGCTCAACATTCTTCAGTTCAAAATCTGGACTATGAGCCAAGCATGAGTTCCCAAATGTCTGACATGATCCACTGGTTCCATGTAACAAATCTTCATCGAGGCACAACGCGAAACTCCCACCTCCTCCAAATGCCAAAGCATCATTCAAGCATAAGTAGTAGTACCTGTTGGCACCGGTTGGTCTGAAAAGCCTAGGTTCACCATAAATCGTTGTGAATACAAATGTCTGATTAGTTCCCTGGTATTTTCTTTTCTCTGTAGGCCTGAGAGGACCATTTAACAAGCCACCAAACACAGCCCCCCGCATGTCTCCAACAATCAATAGGCATGGACCCTGGAGATTTTCACTCCTACGGAAAAGTGTTCTTAGCGATGTTCCATGCTTCCAAGTGCTGCACTATATA] consensusID : consensus_560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTCATATTTAAGGCTCTATACATATGCCCAAACATTTAAGGGGACGGAATTTTTAAAAGTTTGAAGGGAACTTGAATACTGCCTAAATCAATAAAAACAAGGGTGTTCCAATAAAAAATAATAGGTATCCGGGGACTAAACTAGAGGGCAATTGGGATTTGGGATTGCTTCATTTATAATGTATCCAAGGCCAACTATGTTGAACGACCCCATGAATGAGTAAAACCCCACAGCTCAACATTTTTCAGTTCAAAATCTGGACTATAACCCAAGCATGAGTTCCCAAATGTCTAACATGATCCACTGGTTCCATGTAACAAATCTTCATCGAGGCACAACGCGAAACTCCCACCTCCTCCAAATGCCAAAGCATCATTCAAGCATAAGTAGTAGTACCTGTTGGCACCGGTTGGTCTGAAAAGCCTAGGTTCACCATAAATCGTTGGGAATACAAAGGTCTAATTAGTTCCCTGGAATTTTCTTTTCTCTGTAGGCCTGAGAGGACCATTTAACAAGCCACCAAACACAGCCCCCCTTGTCT] [+] EMBL CA759460 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTCATATTTAAGGCTCTATACATATGCCCAAACATTTAAGGGGACGGAATTTTTAAAAGTTTGAAGGGAACTTGAATACTGCCTAAATCAATAAAAACAAGGGTGTTCCAATAAAAAATAATAGGTATCCGGGGACTAAACTAGAGGGCAATTGGGATTTGGGATTGCTTCATTTATAATGTATCCAAGGCCAACTATGTTGAACGACCCCATGAATGAGTAAAACCCCACAGCTCAACATTTTTCAGTTCAAAATCTGGACTATAACCCAAGCATGAGTTCCCAAATGTCTAACATGATCCACTGGTTCCATGTAACAAATCTTCATCGAGGCACAACGCGAAACTCCCACCTCCTCCAAATGCCAAAGCATCATTCAAGCATAAGTAGTAGTACCTGTTGGCACCGGTTGGTCTGAAAAGCCTAGGTTCACCATAAATCGTTGGGAATACAAAGGTCTAATTAGTTCCCTGGAATTTTCTTTTCTCTGTAGGCCTGAGAGGACCATTTAACAAGCCACCAAACACAGCCCCCCTTGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_560#0 ATCATATTGTAAAATCATGACGTCCTTAGGCTCAAAAGATTTGTCTCACAATTTACATGC 60 consensus_560#1 ---------------------------------------------------TTTTTTTTT 9 *** * consensus_560#0 AAACTGTGCAATTGATTTTTTTCGTTCATATTTAATGCTCTATACATATGTCCAAACATT 120 consensus_560#1 ---TTTTTTTTTTTTTTTTTTTCGTTCATATTTAAGGCTCTATACATATGCCCAAACATT 66 * * ** ******************** ************** ********* consensus_560#0 TAATGTGACGGAATTTTTAGAAGTTTGAAGGGAACTTAAATACTGCCTAAATCAATAAGA 180 consensus_560#1 TAAGGGGACGGAATTTTTAAAAGTTTGAAGGGAACTTGAATACTGCCTAAATCAATAAAA 126 *** * ************* ***************** ******************** * consensus_560#0 ACAATGGTGTTACAATAAAAAATAATAGGTATACAGTGACTAGACTAGAGGGCAATTGGG 240 consensus_560#1 ACAAGGGTGTTCCAATAAAAAATAATAGGTATCCGGGGACTAAACTAGAGGGCAATTGGG 186 **** ****** ******************** * * ***** ***************** consensus_560#0 ATTTGGGATTGCTTCATTTATGATGTATCCAAGGCCAACTATGTTGAACGACCCCATGAA 300 consensus_560#1 ATTTGGGATTGCTTCATTTATAATGTATCCAAGGCCAACTATGTTGAACGACCCCATGAA 246 ********************* ************************************** consensus_560#0 TGAGTAAAACCCCACAGCTCAACATTCTTCAGTTCAAAATCTGGACTATGAGCCAAGCAT 360 consensus_560#1 TGAGTAAAACCCCACAGCTCAACATTTTTCAGTTCAAAATCTGGACTATAACCCAAGCAT 306 ************************** ********************** * ******** consensus_560#0 GAGTTCCCAAATGTCTGACATGATCCACTGGTTCCATGTAACAAATCTTCATCGAGGCAC 420 consensus_560#1 GAGTTCCCAAATGTCTAACATGATCCACTGGTTCCATGTAACAAATCTTCATCGAGGCAC 366 **************** ******************************************* consensus_560#0 AACGCGAAACTCCCACCTCCTCCAAATGCCAAAGCATCATTCAAGCATAAGTAGTAGTAC 480 consensus_560#1 AACGCGAAACTCCCACCTCCTCCAAATGCCAAAGCATCATTCAAGCATAAGTAGTAGTAC 426 ************************************************************ consensus_560#0 CTGTTGGCACCGGTTGGTCTGAAAAGCCTAGGTTCACCATAAATCGTTGTGAATACAAAT 540 consensus_560#1 CTGTTGGCACCGGTTGGTCTGAAAAGCCTAGGTTCACCATAAATCGTTGGGAATACAAAG 486 ************************************************* ********* consensus_560#0 GTCTGATTAGTTCCCTGGTATTTTCTTTTCTCTGTAGGCCTGAGAGGACCATTTAACAAG 600 consensus_560#1 GTCTAATTAGTTCCCTGGAATTTTCTTTTCTCTGTAGGCCTGAGAGGACCATTTAACAAG 546 **** ************* ***************************************** consensus_560#0 CCACCAAACACAGCCCCCCGCATGTCTCCAACAATCAATAGGCATGGACCCTGGAGATTT 660 consensus_560#1 CCACCAAACACAGCCCCCCTTGTCT----------------------------------- 571 ******************* * * consensus_560#0 TCACTCCTACGGAAAAGTGTTCTTAGCGATGTTCCATGCTTCCAAGTGCTGCACTATATA 720 consensus_560#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||