These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1517 fasta sequence [CCATCCGGCGGAGGAAGATGGAGGCGCAGGCGACCCACCGGCGAGCCGGAGACCGCGGCGGCGGTGGCGACGGCGGGAGCTCCTCCGCCTCCATCGCCAAGCACCTCGCAAACCAGAGCCAGGTCTTGAAGTGGCTGCAAGATTTCTCTGATAAGGTGGAGGAGAGAGCTAAAGGAGCCGCTGCAGAAGTCAATGTGTTGTTAGATGAGGCTGGGGCGCTGGAGCTGGATATGAAGACCGCGATGATCTCCTTCAACAACCTGACCCGCCAAAGGTTCATTGAACATAAAATTTCAGATGAAGATAGTATGCATCTGAAAACAACGGAGAGTATGCATGGTTCTCTGCAATCCCAAGTGCCAGCTCAGGATTATGAACGTGATATTTTACCAAGATACAAAGAAGCATTACACATAGGACTTTCTTCCTGTAAGGACCACTTCCGAAGCAAGGGACGCTCTACCACCTCTGTGTTCAGGGCTATGTCTGCATATGGCCCTCTTCCACATATAATTGGTTCTGAAGAGTACATTCATGATAACAGCTGTGGTCTGGCAGATGATATGCAGCCTCTAAGTGATGACTTCAGTTGGTTGCGGGAGTTTCAAAGTGAGTCTTCAGACTCACGGACTGCTGATATCTCTGAGTCTCAAATTTTCGGGGCTCAGCGAGGTTATGAGAAGGGGGAAACTGACTCTGTGGTTTCTGCTGCACGAGAATTCAAGGCAATGCTGGAGGCTGCACTTGTTAATCCCTATAAGTTCTATGATGATGCAACTATTACAGCGCAAGATGCTTCTGTAGAGAAGAAGATAAGCACAAGTGAGGACCAAGTTATGCTGACAGGGACAAGTGAAGCACCGAGTGGAAGATCAGCACAAGAAGATAACTCTGAACAGACAGGACTTTTTGCAAGCTTGCAAAGCGCAGATGCCAATCCTCATGACATCTATTCTGCTTTGGTTAGAGAAGGCCTGTTTGATACTGGTGATGAGATTCTGTCTATGGATAGAGGGGAGTCTGCTGATACTCCTATTTCAGGCCTAGCGTCAGGTTTAGCAAATCTTGGCACTGCTGATCCAGCTGAAAGGGGCTACTCAATAAACGAGACTACAAATGAGGAGGGATACTTGATTGAAGGGGATGATCCATCACCATCAAACAAAGACGAACAAGATGACCAAACTGATGCACATGGTGTGTCTTCGCCAGAGCCAGAAGATGGTGTTTCTAGACCATCCTAGCCATGCTGATATTGGTTGATTTCTTCTCGAGTGCAGTTCATTCTGTCAAAATCTACTGTAGACGCTGGTGAAGCAACTGAATGGCAATGATTTAGACGAGGAACACACTTTTGCTGCCATGTGCTGAGTGCTGTAGACTAAGAAATTATATACTCCCTTTGTTTCAGGTTATAAGACGTTTTGATTTTTGGTCAAAGTCAGGACAAATTTGTAGAAAAAAATAGTAACATTTTCAAGCCAGGACAAATTTATTATGAAAATATATTTAATTAT] [+] EMBL AK069806 [CCATCCGGCGGAGGAAGATGGAGGCGCAGGCGACCCACCGGCGAGCCGGAGACCGCGGCGGCGGTGGCGACGGCGGGAGCTCCTCCGCCTCCATCGCCAAGCACCTCGCAAACCAGAGCCAGGTCTTGAAGTGGCTGCAAGATTTCTCTGATAAGGTGGAGGAGAGAGCTAAAGGAGCCGCTGCAGAAGTCAATGTGTTGTTAGATGAGGCTGGGGCGCTGGAGCTGGATATGAAGACCGCGATGATCTCCTTCAACAACCTGACCCGCCAAAGGTTCATTGAACATAAAATTTCAGATGAAGATAGTATGCATCTGAAAACAACGGAGAGTATGCATGGTTCTCTGCAATCCCAAGTGCCAGCTCAGGATTATGAACGTGATATTTTACCAAGATACAAAGAAGCATTACACATAGGACTTTCTTCCTGTAAGGACCACTTCCGAAGCAAGGGACGCTCTACCACCTCTGTGTTCAGGGCTATGTCTGCATATGGCCCTCTTCCACATATAATTGGTTCTGAAGAGTACATTCATGATAACAGCTGTGGTCTGGCAGATGATATGCAGCCTCTAAGTGATGACTTCAGTTGGTTGCGGGAGTTTCAAAGTGAGTCTTCAGACTCACGGACTGCTGATATCTCTGAGTCTCAAATTTTCGGGGCTCAGCGAGGTTATGAGAAGGGGGAAACTGACTCTGTGGTTTCTGCTGCACGAGAATTCAAGGCAATGCTGGAGGCTGCACTTGTTAATCCCTATAAGTTCTATGATGATGCAACTATTACAGCGCAAGATGCTTCTGTAGAGAAGAAGATAAGCACAAGTGAGGACCAAGTTATGCTGACAGGGACAAGTGAAGCACCGAGTGGAAGATCAGCACAAGAAGATAACTCTGAACAGACAGGACTTTTTGCAAGCTTGCAAAGCGCAGATGCCAATCCTCATGACATCTATTCTGCTTTGGTTAGAGAAGGCCTGTTTGATACTGGTGATGAGATTCTGTCTATGGATAGAGGGGAGTCTGCTGATACTCCTATTTCAGGCCTAGCGTCAGGTTTAGCAAATCTTGGCACTGCTGATCCAGCTGAAAGGGGCTACTCAATAAACGAGACTACAAATGAGGAGGGATACTTGATTGAAGGGGATGATCCATCACCATCAAACAAAGACGAACAAGATGACCAAACTGATGCACATGGTGTGTCTTCGCCAGAGCCAGAAGATGGTGTTTCTAGACCATCCTAGCCATGCTGATATTGGTTGATTTCTTCTCGAGTGCAGTTCATTCTGTCAAAATCTACTGTAGACGCTGGTGAAGCAACTGAATGGCAATGATTTAGACGAGGAACACACTTTTGCTGCCATGTGCTGAGTGCTGTAGACTAAGAAATTATATACTCCCTTTGTTTCAGGTTATAAGACGTTTTGATTTTTGGTCAAAGTCAGGACAAATTTGTAGAAAAAAATAGTAACATTTTCAAGCCAGGACAAATTTATTATGAAAATATATTTAATTAT] consensusID : consensus_5605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 769 fasta sequence [CACGGGTTCCTCGCCCGGGAGGGCCACATCAACTTCAGTGTCTCCGCCGCGTTCNCCGCCTCTCCCCATCAACTTCGAAGTCATTAGTCGCCGCTTCGAGCTCAACCAAAGAAAATGATCTGTATGCTGGAATGCCCAGAGCTTCCAATTTCACTGTCTGAGATATGTAACCTGTTTGGTTGTTCCAGGTAAATGCAACAAGAAGTTAGTATTTCAGATAAAGTTCCAGAAAAAAAAATGGCGCTATCAAGTTAGTTACTCTAACACTAGGCAAAGTTCCAGAGAAAATGACGCCAAAGTAAACGAATCTAAAAAAGAGCAAAAGAGATACAGAAGTTTCAGTCAAAGAATCTGAAATTCAGCAAAAGTTTCAGAGATTGTGCCAAGTTGGTGACTCTGAAATTCAGCAAAAGTTTCAATGAATGACTGAAATTTAGCAAATGATCCAGCTAATGACTGAAATTCAACAAATTTTCAGTTAATAAATCTGAAATTCTAGGACCAAGTTACGCTGACAGGGACAAGTGAAGCACCGAGTGGAAGATCAGCACAAGAAGATAACTCTGAACAGACAGGACTTTTTGCAAGCTTGCAAAGTGCAGATGCCAATCCTCATGACATCTATTCTTCTTTGGTTAGAGAAGGCCTGTTTGATACTGGTGATGAGATTCTGTCTATGGATACAGGGGAATCTGCTGATACTCCTATTTCAGGCCTAGCGTCAGGTTTAGCAAATCTTGGCACTGCTGATCCAGCTGAAAGGGGCTAC] [-] EMBL CB666593 [CACGGGTTCCTCGCCCGGGAGGGCCACATCAACTTCAGTGTCTCCGCCGCGTTCNCCGCCTCTCCCCATCAACTTCGAAGTCATTAGTCGCCGCTTCGAGCTCAACCAAAGAAAATGATCTGTATGCTGGAATGCCCAGAGCTTCCAATTTCACTGTCTGAGATATGTAACCTGTTTGGTTGTTCCAGGTAAATGCAACAAGAAGTTAGTATTTCAGATAAAGTTCCAGAAAAAAAAATGGCGCTATCAAGTTAGTTACTCTAACACTAGGCAAAGTTCCAGAGAAAATGACGCCAAAGTAAACGAATCTAAAAAAGAGCAAAAGAGATACAGAAGTTTCAGTCAAAGAATCTGAAATTCAGCAAAAGTTTCAGAGATTGTGCCAAGTTGGTGACTCTGAAATTCAGCAAAAGTTTCAATGAATGACTGAAATTTAGCAAATGATCCAGCTAATGACTGAAATTCAACAAATTTTCAGTTAATAAATCTGAAATTCTAGGACCAAGTTACGCTGACAGGGACAAGTGAAGCACCGAGTGGAAGATCAGCACAAGAAGATAACTCTGAACAGACAGGACTTTTTGCAAGCTTGCAAAGTGCAGATGCCAATCCTCATGACATCTATTCTTCTTTGGTTAGAGAAGGCCTGTTTGATACTGGTGATGAGATTCTGTCTATGGATACAGGGGAATCTGCTGATACTCCTATTTCAGGCCTAGCGTCAGGTTTAGCAAATCTTGGCACTGCTGATCCAGCTGAAAGGGGCTAC] consensusID : consensus_5605#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [CCCGGAGGAAGATGGAGGCGCAGGCGACCCACCGGCGAGCCGGAGACTGCGGCGGCGGTGGCGACGGCGGGAGCTCCTCCGCCTCCATCGCCAAGCACCTCGCAAACCAGAGCCAGGTCTTGAAGTGGCTGCAAGATTTCTCTGATAAGGTGGAGGAGAGAGCTAAAGGAGCCGCTGCAGAAGTCATGTGTTGTTAGATGAGGCTGGGGCGCTGGAGCTGGATATGAAGACCGCGATGATCTCCTTCAACAACCTGACCCGCCAAGGTTCATTGAACATGCAAGTAGTGGTTCCAATCTGTATATTGCACTTGTCTTTGGATGCCTCTAGTCTAGAAAGTTATGCTTGCTTTGTGATTGATTTGTTTATATCAGATGACAATATACTTAACTTTTGGCTCGTAGTACACCCTTCTGTGGTCAAGTGTCGTATACTTGTTTTGATTACTNTTGTAAAAGACATAAATTTCAATTTACATAAATTCAATTTATGATAAA] [+] EMBL BI805536 [CCCGGAGGAAGATGGAGGCGCAGGCGACCCACCGGCGAGCCGGAGACTGCGGCGGCGGTGGCGACGGCGGGAGCTCCTCCGCCTCCATCGCCAAGCACCTCGCAAACCAGAGCCAGGTCTTGAAGTGGCTGCAAGATTTCTCTGATAAGGTGGAGGAGAGAGCTAAAGGAGCCGCTGCAGAAGTCATGTGTTGTTAGATGAGGCTGGGGCGCTGGAGCTGGATATGAAGACCGCGATGATCTCCTTCAACAACCTGACCCGCCAAGGTTCATTGAACATGCAAGTAGTGGTTCCAATCTGTATATTGCACTTGTCTTTGGATGCCTCTAGTCTAGAAAGTTATGCTTGCTTTGTGATTGATTTGTTTATATCAGATGACAATATACTTAACTTTTGGCTCGTAGTACACCCTTCTGTGGTCAAGTGTCGTATACTTGTTTTGATTACTNTTGTAAAAGACATAAATTTCAATTTACATAAATTCAATTTATGATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5605#0 CCATCCGGCGGAGGAAGATGGAGGCGCAGGCGACCCACCGGCGAGCCGGAGACCGCGGCG 60 consensus_5605#2 ------CCCGGAGGAAGATGGAGGCGCAGGCGACCCACCGGCGAGCCGGAGACTGCGGCG 54 consensus_5605#1 ------------------------CACGGGTTCCTCGCCCGGGAG--GGCCACATCAACT 34 * * ** * * ** * *** ** ** * * consensus_5605#0 GCGGTGGCGACGGCGGGAGCTCCTCCGCCTCCATCGCCAAGCACCTCGCAAACCAGAGCC 120 consensus_5605#2 GCGGTGGCGACGGCGGGAGCTCCTCCGCCTCCATCGCCAAGCACCTCGCAAACCAGAGCC 114 consensus_5605#1 TCAGTGTCTCCGCCGCG---TTCNCCGCCTC--TCCCCATCAACTTCGAAGTCATTAGTC 89 * *** * ** ** * * * ******* ** *** ** *** * * ** * consensus_5605#0 AGGTCTTGAAGT--GGCTGCAAGATTTCTCTGATAAGGTGGAGGAG--AGAGCTAAAGGA 176 consensus_5605#2 AGGTCTTGAAGT--GGCTGCAAGATTTCTCTGATAAGGTGGAGGAG--AGAGCTAAAGGA 170 consensus_5605#1 GCCGCTTCGAGCTCAACCAAAGAAAATGATCTGTATGCTGGAATGCCCAGAGCTTCCAAT 149 *** ** * * * * ** * **** ****** consensus_5605#0 GCCGCTG-CAGAAGTCAATGTGTTGTTAGATGAGGCTGGGGCGCTGGAGCTGGATATGAA 235 consensus_5605#2 GCCGCTG-CAGAAGTCA-TGTGTTGTTAGATGAGGCTGGGGCGCTGGAGCTGGATATGAA 228 consensus_5605#1 TTCACTGTCTGAGATATGTAACCTGTTTGGTTGTTCCAGGTAAATGCAACAAGAAGTTAG 209 * *** * ** * * **** * * * ** ** * * ** * * consensus_5605#0 GACCGC-GATGATCTCCTTCAACAACCTGACCCGCCAAAGGTTCATTGAACATAAAATTT 294 consensus_5605#2 GACCGC-GATGATCTCCTTCAACAACCTGACCCGCCAA-GGTTCATTGAACATGCAAGT- 285 consensus_5605#1 TATTTCAGATAAAGTTCCAGAAAAAAAAATGGCGCTATCAAGTTAGTTACTCTAACACT- 268 * * *** * * * ** ** *** * * * * * * * * consensus_5605#0 CAGATGAAGATAGTATGCATCTGAAAACAAC---GGAGAGTATGCATGGTTCTCTGCAAT 351 consensus_5605#2 --------AGTGGTTCCAATCTGTATATTGC---ACT---TGTCTTTGGATGCCTCTAGT 331 consensus_5605#1 -----AGGCAAAGTTCCAGAGAAAATGACGCCAAAGTAAACGAATCTAAAAAAGAGCAAA 323 ** * * * * consensus_5605#0 CCCAAGTGCCAGCTCA-GGATTATGAACGTGATATTTTACCAAGATACAAAGAAGCATTA 410 consensus_5605#2 CTAGAAAGTTATGCTT-GCTTTGTGATTGATTTGTTT-------ATATCAGATGACAATA 383 consensus_5605#1 AGAGATACAGAAGTTTCAGTCAAAGAATCTGAAATTCAGCAAAAGTTTCAGAGATTGTGC 383 * * ** ** * * consensus_5605#0 CAC-ATAGGACTTTCTTCCTGTAAGGACCACTTCCGAAGCAAGGGACGCTCTACCACCT- 468 consensus_5605#2 TAC-TTA--ACTTTTGGCTCGTAGTACACCCTTCTGTGGTCAAGTGTCGTATACT----- 435 consensus_5605#1 CAAGTTGGTGACTCTGAAATTCAGCAAAAGTTTCAATGAATGACTGAAATTTAGCAAATG 443 * * * * *** * ** consensus_5605#0 -CTGTGTTCAGGGCTATGTCTGCATATGGCCCTCTTCCACATATAATTGGTTCTGAAGAG 527 consensus_5605#2 --TGTTTT---GATTACTNTTGTAAAAGAC--------ATAAATTTCAATTTACATAAAT 482 consensus_5605#1 ATCCAGCTAATGACTGAAATTCAACAAATTTTCAGTTAATAAATCTGAAATTC--TAGGA 501 * * * * * * * * ** ** * consensus_5605#0 TACATTCATGATAACAGCTGTGGTCTGGCAGATGATATGCAGCCTCTAAGTGATGACTTC 587 consensus_5605#2 TCAATTTATGATAAA--------------------------------------------- 497 consensus_5605#1 CCAAGTTACGCTGACAGGGACAAGTGAAGCACCGAGTGGAAGATCAGCACAAGAAGATAA 561 * * * * * * consensus_5605#0 AGTTGGTTGCGGGAGTTTCAAAGTGAGTCTTCAGACTCACGGACTGCTGATATCTCTGAG 647 consensus_5605#2 ------------------------------------------------------------ consensus_5605#1 CTCTGAACAGACAGGACTTTTTGCAAGCTTGCAAAGTGCAGA--TGCCAATCCTCATGAC 619 consensus_5605#0 TCTCAAATTTTCGGGGCTCAGCGAGGTTATGAGAAGGGGGAAACTGACTCTGTGGTTTCT 707 consensus_5605#2 ------------------------------------------------------------ consensus_5605#1 ATCTATTCTTCTTTGGTTAGAGAAGGCCTGTTTGATACTGGTGATGAGATTCTGTCTATG 679 consensus_5605#0 GCTGCACGAGAATTCAAGGCAATGCTGGAGGCTGCACTTGTTAATCCCTATAAGTTCTAT 767 consensus_5605#2 ------------------------------------------------------------ consensus_5605#1 GATACAGGGGAATCTGCTGATACTCCTATTTCAGGCCTAGCGTCAGGTTTAGCAAATCTT 739 consensus_5605#0 GATGATGCAACTATTACAGCGCAAGATGCTTCTGTAGAGAAGAAGATAAGCACAAGTGAG 827 consensus_5605#2 ------------------------------------------------------------ consensus_5605#1 GGCACTGCTGATCCAGCTGAAAGGGGCTAC------------------------------ 769 consensus_5605#0 GACCAAGTTATGCTGACAGGGACAAGTGAAGCACCGAGTGGAAGATCAGCACAAGAAGAT 887 consensus_5605#2 ------------------------------------------------------------ consensus_5605#1 ------------------------------------------------------------ consensus_5605#0 AACTCTGAACAGACAGGACTTTTTGCAAGCTTGCAAAGCGCAGATGCCAATCCTCATGAC 947 consensus_5605#2 ------------------------------------------------------------ consensus_5605#1 ------------------------------------------------------------ consensus_5605#0 ATCTATTCTGCTTTGGTTAGAGAAGGCCTGTTTGATACTGGTGATGAGATTCTGTCTATG 1007 consensus_5605#2 ------------------------------------------------------------ consensus_5605#1 ------------------------------------------------------------ consensus_5605#0 GATAGAGGGGAGTCTGCTGATACTCCTATTTCAGGCCTAGCGTCAGGTTTAGCAAATCTT 1067 consensus_5605#2 ------------------------------------------------------------ consensus_5605#1 ------------------------------------------------------------ consensus_5605#0 GGCACTGCTGATCCAGCTGAAAGGGGCTACTCAATAAACGAGACTACAAATGAGGAGGGA 1127 consensus_5605#2 ------------------------------------------------------------ consensus_5605#1 ------------------------------------------------------------ consensus_5605#0 TACTTGATTGAAGGGGATGATCCATCACCATCAAACAAAGACGAACAAGATGACCAAACT 1187 consensus_5605#2 ------------------------------------------------------------ consensus_5605#1 ------------------------------------------------------------ consensus_5605#0 GATGCACATGGTGTGTCTTCGCCAGAGCCAGAAGATGGTGTTTCTAGACCATCCTAGCCA 1247 consensus_5605#2 ------------------------------------------------------------ consensus_5605#1 ------------------------------------------------------------ consensus_5605#0 TGCTGATATTGGTTGATTTCTTCTCGAGTGCAGTTCATTCTGTCAAAATCTACTGTAGAC 1307 consensus_5605#2 ------------------------------------------------------------ consensus_5605#1 ------------------------------------------------------------ consensus_5605#0 GCTGGTGAAGCAACTGAATGGCAATGATTTAGACGAGGAACACACTTTTGCTGCCATGTG 1367 consensus_5605#2 ------------------------------------------------------------ consensus_5605#1 ------------------------------------------------------------ consensus_5605#0 CTGAGTGCTGTAGACTAAGAAATTATATACTCCCTTTGTTTCAGGTTATAAGACGTTTTG 1427 consensus_5605#2 ------------------------------------------------------------ consensus_5605#1 ------------------------------------------------------------ consensus_5605#0 ATTTTTGGTCAAAGTCAGGACAAATTTGTAGAAAAAAATAGTAACATTTTCAAGCCAGGA 1487 consensus_5605#2 ------------------------------------------------------------ consensus_5605#1 ------------------------------------------------------------ consensus_5605#0 CAAATTTATTATGAAAATATATTTAATTAT 1517 consensus_5605#2 ------------------------------ consensus_5605#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||