These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1811 fasta sequence [GGAACTACCACGCTCGATCTTCCGCTGCGCGCGCCGATTTGAGCTTTACGCCGGCCTACCCAATTACCCAATCCAGCAAGAACAGCATATACTCGTCCCGCCCATGGCAGGATCGACTCTGTTCCGATGGCTCTTCTTACTGCTGGCCATCGTGTCGCTTGCCGCGGCGGATAGCGGCAGCGGCGAAGCAGAGACCACCGTCCCCGGACAAATTCGCCTGAGCTGCGGCGCGTCTGCCTCCGCCACCGACGGGGACGGCCGGGCGTGGGACGGTGACGCCGTGTCCACGTTCGCGCCGTCGGTGACCGGCGTCGCGGCCGACGCGTCGTACCAGGACCCCTCGCTGCCTTCCCCCGTGCCGTACATGACGGCGCGCGTGTTCAGCTCCAGCTACACCTACTCCTTCCCCGTCAAGCCCGGCCGCGTGTTCCTCCGTCTCTACTTCTACCCGTCCGCCTACGGCAACCTCGGCGCCGCCGCCGCCGCCGCGGACGCGCTGTTCGGCGTCACCGCGGGCGGCATCACGCTCCTCCGCGACTTCAACGCGTCGCAGACCGCGCTCGCGGTCGGCTACGCGTACATCGTCCGCGAGTTCTCGCTGAACGTCAGCTCCGGCGCCACGAGCCTCAACGTCACCTTCGCCCCCTCGCCGCGTGGCGCCCCCGGCCACGGGTCCCACCACTACGCGTTCGTCAACGGCATCGAGGTCGTGCCCACGCCGGACATGTTCACGACGCCGGTGCCCGCCTTCGCCAACGGCGGGCGCCCGAACCCGATGCCCCTCCGCGCCGACACGGCGTTCCAGACGATGTACCGCCTCAACGTCGGCGGCGAGGCCATCACCCCACGGGACGACGCCGGCGGTTTCTACCGCACGTGGGACAACGACGCGCCCTACATCTTCGGCGCGGCCTTCGGTGTGACCTTCGCGAAGGACAGCAACGTCAGCGTCCGGTACAACCCGCCGTCGGTGCCGAAGTACGCCGCACCGGAGGACGTGTACGCGACGGCGAGGTCGATGGGCCCGAACGCGCAGATCAACCTCAACTACAACCTCACCTGGATCCTCCCCGTCGACGCCGGCTTCTACTACCTCCTCAGGTTCCACTTCTGCGAGATCCAGTACCCGATAACGAAGGTGAACCAGAGATCATTCTTCATCTACATCAACAACCAGACGGCGCAGTCTCAGATGGACGTGATAGTGTGGAGCGGAGGGATCGGGAGGGCGGTGTACACGGATTACCTCGTCGTCACGGCGGGCTCCGGCCAGATGGATCTGCTGGTGGCGCTGCACCCGGACCTCAGCTCCAGGCCGGAGTACTTCGACGCCATACTCAACGGCCTCGAGGTGTTCAAGCTCCACAAGTACGGAACCCACAGCCTTGCCGGGCCAAACCCGCCGATCCCGCTGAAGCAGGTATTCAGCACGGTGGACGGAAGCAGATCGGAGTCCAGGAAGAAGAGCGTCGTCTGCGCCGCCGTCGGCGGTGTGGCCGCCGGTTGCTTCCTTGCGGTGTTGGTTGCCTTCGCCGTCGCGTGGGCTGTTCGCAGGAGGCAGAGGAAGGCCGCGGCGGAGAAACCGGCTGATGGGCTTCTTGGCCCAACAAAAGGCTCCGCCCTTTATGACCCGGTCCAAAAATAAACAGGCCAATTTTTTAAGCCTTTTGTTTTGATAATATTATAGGGTATGTATAGCTATAATTGGGTTAACATGAAAGAATTATAAATGGGCCCAAAAACATCACATGCTTTGGCAATTTTTCAAGGAGAGAACTATATATTACCTCCCTTAACTAAAAAAAAAAAAA] [+] EMBL AK106447 [GGAACTACCACGCTCGATCTTCCGCTGCGCGCGCCGATTTGAGCTTTACGCCGGCCTACCCAATTACCCAATCCAGCAAGAACAGCATATACTCGTCCCGCCCATGGCAGGATCGACTCTGTTCCGATGGCTCTTCTTACTGCTGGCCATCGTGTCGCTTGCCGCGGCGGATAGCGGCAGCGGCGAAGCAGAGACCACCGTCCCCGGACAAATTCGCCTGAGCTGCGGCGCGTCTGCCTCCGCCACCGACGGGGACGGCCGGGCGTGGGACGGTGACGCCGTGTCCACGTTCGCGCCGTCGGTGACCGGCGTCGCGGCCGACGCGTCGTACCAGGACCCCTCGCTGCCTTCCCCCGTGCCGTACATGACGGCGCGCGTGTTCAGCTCCAGCTACACCTACTCCTTCCCCGTCAAGCCCGGCCGCGTGTTCCTCCGTCTCTACTTCTACCCGTCCGCCTACGGCAACCTCGGCGCCGCCGCCGCCGCCGCGGACGCGCTGTTCGGCGTCACCGCGGGCGGCATCACGCTCCTCCGCGACTTCAACGCGTCGCAGACCGCGCTCGCGGTCGGCTACGCGTACATCGTCCGCGAGTTCTCGCTGAACGTCAGCTCCGGCGCCACGAGCCTCAACGTCACCTTCGCCCCCTCGCCGCGTGGCGCCCCCGGCCACGGGTCCCACCACTACGCGTTCGTCAACGGCATCGAGGTCGTGCCCACGCCGGACATGTTCACGACGCCGGTGCCCGCCTTCGCCAACGGCGGGCGCCCGAACCCGATGCCCCTCCGCGCCGACACGGCGTTCCAGACGATGTACCGCCTCAACGTCGGCGGCGAGGCCATCACCCCACGGGACGACGCCGGCGGTTTCTACCGCACGTGGGACAACGACGCGCCCTACATCTTCGGCGCGGCCTTCGGTGTGACCTTCGCGAAGGACAGCAACGTCAGCGTCCGGTACAACCCGCCGTCGGTGCCGAAGTACGCCGCACCGGAGGACGTGTACGCGACGGCGAGGTCGATGGGCCCGAACGCGCAGATCAACCTCAACTACAACCTCACCTGGATCCTCCCCGTCGACGCCGGCTTCTACTACCTCCTCAGGTTCCACTTCTGCGAGATCCAGTACCCGATAACGAAGGTGAACCAGAGATCATTCTTCATCTACATCAACAACCAGACGGCGCAGTCTCAGATGGACGTGATAGTGTGGAGCGGAGGGATCGGGAGGGCGGTGTACACGGATTACCTCGTCGTCACGGCGGGCTCCGGCCAGATGGATCTGCTGGTGGCGCTGCACCCGGACCTCAGCTCCAGGCCGGAGTACTTCGACGCCATACTCAACGGCCTCGAGGTGTTCAAGCTCCACAAGTACGGAACCCACAGCCTTGCCGGGCCAAACCCGCCGATCCCGCTGAAGCAGGTATTCAGCACGGTGGACGGAAGCAGATCGGAGTCCAGGAAGAAGAGCGTCGTCTGCGCCGCCGTCGGCGGTGTGGCCGCCGGTTGCTTCCTTGCGGTGTTGGTTGCCTTCGCCGTCGCGTGGGCTGTTCGCAGGAGGCAGAGGAAGGCCGCGGCGGAGAAACCGGCTGATGGGCTTCTTGGCCCAACAAAAGGCTCCGCCCTTTATGACCCGGTCCAAAAATAAACAGGCCAATTTTTTAAGCCTTTTGTTTTGATAATATTATAGGGTATGTATAGCTATAATTGGGTTAACATGAAAGAATTATAAATGGGCCCAAAAACATCACATGCTTTGGCAATTTTTCAAGGAGAGAACTATATATTACC ] [+] EMBL AU174982 [ CTCCACAAGTACGGAACCCACAGCCTTGCCGGGCCAAACCCGCCGATCCCGCTGAAGCAGGTATTCAGCACGGTGGACGGAAGCAGATCGGAGTCCAGGAAGAAGAGCGTCGTCTGCNCCGCCGTCGGCGTNGTGGCCGCCGGTTGCTTCCTTGCGGTGTTGGTTGCCTTCGCCGTCGCGTGGGCTGTTCGCAGGAGGCAGAGGAAGGCCGCGGCGGAGAAACCGGCTGATGGGCTTCTTGGCCCAACAAAAGGCTCCGCCCTTTATGACCCGGTCCAAAAATAAACAGGCCAATTTTTTAAGCCTTTTGTTTTGATAATATTATAGGGTATGTATAGCTATAATTGGGTTAACATGAAAGAATTATAAATGGGCCCAAAAACATCACATGCTTTGGCAATTTTTCAAGGAGAGAACTATATATTACCTCCCTTAACTAAAAAAAAAAAAA] consensusID : consensus_5608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [ATGGAATTTTCTGTGNGCTGCTGATCACCTCGGACTTCAGTTCAGGCCGGATGTATTGTTGACCCCATTATTCTATCGGCCTCTCGAGGTGTTTCAAGCTCCACAATTCTGGAACCCTACATACCTTGTCTCGGGCCAAACCCTCCGATCCCGCTGATAGTTCAGGTATTCATCACGGTGGTACGGAATCAGATCGGTAGTCCAGGTAAGAAAGAGCNTCGTTGCTCCCCTTCGGCGGTGTGCCCCGGTTGCTTCCTGCGGTGTGTGGTGCCTTCCGTCGCGTGGGCTGTTCCCAGGAGGCAGNGGAAGGCCTGCGGCGGAGAANACCGGCTGATGTGCTTCTTGGCCCCACNAAAGGCTCCCCCCTTTATGACCCGGTCCCAAAATNAACAGGCCCATTTTTTAAGCCTTTTGTTTTGATAATATTATAGGGTAAGTAAAGCTATAATTGGGTAACATGAAAGAATTANAAAGGGGTCCCAAAAAAAAAA] [+] EMBL BI805910 [ATGGAATTTTCTGTGNGCTGCTGATCACCTCGGACTTCAGTTCAGGCCGGATGTATTGTTGACCCCATTATTCTATCGGCCTCTCGAGGTGTTTCAAGCTCCACAATTCTGGAACCCTACATACCTTGTCTCGGGCCAAACCCTCCGATCCCGCTGATAGTTCAGGTATTCATCACGGTGGTACGGAATCAGATCGGTAGTCCAGGTAAGAAAGAGCNTCGTTGCTCCCCTTCGGCGGTGTGCCCCGGTTGCTTCCTGCGGTGTGTGGTGCCTTCCGTCGCGTGGGCTGTTCCCAGGAGGCAGNGGAAGGCCTGCGGCGGAGAANACCGGCTGATGTGCTTCTTGGCCCCACNAAAGGCTCCCCCCTTTATGACCCGGTCCCAAAATNAACAGGCCCATTTTTTAAGCCTTTTGTTTTGATAATATTATAGGGTAAGTAAAGCTATAATTGGGTAACATGAAAGAATTANAAAGGGGTCCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5608#0 GGAACTACCACGCTCGATCTTCCGCTGCGCGCGCCGATTTGAGCTTTACGCCGGCCTACC 60 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 CAATTACCCAATCCAGCAAGAACAGCATATACTCGTCCCGCCCATGGCAGGATCGACTCT 120 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 GTTCCGATGGCTCTTCTTACTGCTGGCCATCGTGTCGCTTGCCGCGGCGGATAGCGGCAG 180 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 CGGCGAAGCAGAGACCACCGTCCCCGGACAAATTCGCCTGAGCTGCGGCGCGTCTGCCTC 240 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 CGCCACCGACGGGGACGGCCGGGCGTGGGACGGTGACGCCGTGTCCACGTTCGCGCCGTC 300 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 GGTGACCGGCGTCGCGGCCGACGCGTCGTACCAGGACCCCTCGCTGCCTTCCCCCGTGCC 360 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 GTACATGACGGCGCGCGTGTTCAGCTCCAGCTACACCTACTCCTTCCCCGTCAAGCCCGG 420 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 CCGCGTGTTCCTCCGTCTCTACTTCTACCCGTCCGCCTACGGCAACCTCGGCGCCGCCGC 480 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 CGCCGCCGCGGACGCGCTGTTCGGCGTCACCGCGGGCGGCATCACGCTCCTCCGCGACTT 540 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 CAACGCGTCGCAGACCGCGCTCGCGGTCGGCTACGCGTACATCGTCCGCGAGTTCTCGCT 600 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 GAACGTCAGCTCCGGCGCCACGAGCCTCAACGTCACCTTCGCCCCCTCGCCGCGTGGCGC 660 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 CCCCGGCCACGGGTCCCACCACTACGCGTTCGTCAACGGCATCGAGGTCGTGCCCACGCC 720 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 GGACATGTTCACGACGCCGGTGCCCGCCTTCGCCAACGGCGGGCGCCCGAACCCGATGCC 780 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 CCTCCGCGCCGACACGGCGTTCCAGACGATGTACCGCCTCAACGTCGGCGGCGAGGCCAT 840 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 CACCCCACGGGACGACGCCGGCGGTTTCTACCGCACGTGGGACAACGACGCGCCCTACAT 900 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 CTTCGGCGCGGCCTTCGGTGTGACCTTCGCGAAGGACAGCAACGTCAGCGTCCGGTACAA 960 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 CCCGCCGTCGGTGCCGAAGTACGCCGCACCGGAGGACGTGTACGCGACGGCGAGGTCGAT 1020 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 GGGCCCGAACGCGCAGATCAACCTCAACTACAACCTCACCTGGATCCTCCCCGTCGACGC 1080 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 CGGCTTCTACTACCTCCTCAGGTTCCACTTCTGCGAGATCCAGTACCCGATAACGAAGGT 1140 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 GAACCAGAGATCATTCTTCATCTACATCAACAACCAGACGGCGCAGTCTCAGATGGACGT 1200 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 GATAGTGTGGAGCGGAGGGATCGGGAGGGCGGTGTACACGGATTACCTCGTCGTCACGGC 1260 consensus_5608#1 ------------------------------------------------------------ consensus_5608#0 GGGCTCCGGCCAGATGGATCTGCTGGTGGCGCTGCACC-CGGACCTCAGCTCCAGGCCGG 1319 consensus_5608#1 ---------ATGGAATTTTCTGTGNGCTGCTGATCACCTCGGACTTCAGTTC-AGGCCGG 50 ** **** * ** **** ***** **** ** ******* consensus_5608#0 A-GTACT-TCGACGCCAT-ACTCAA-CGGCCTC--GAGGTGTT-CAAGCTCCACAAGTAC 1372 consensus_5608#1 ATGTATTGTTGACCCCATTATTCTATCGGCCTCTCGAGGTGTTTCAAGCTCCACAATTCT 110 * *** * * *** **** * ** * ******* ******** ************ * consensus_5608#0 GGAACCC-ACA-GCCTTGCC--GGGCCAAACCCGCCGATCCCGCTGAAG---CAGGTATT 1425 consensus_5608#1 GGAACCCTACATACCTTGTCTCGGGCCAAACCCTCCGATCCCGCTGATAGTTCAGGTATT 170 ******* *** ***** * *********** ************* ******** consensus_5608#0 CAGCACGGTGG-ACGGAAGCAGATCGG-AGTCCAGG--AAGAAGAGCGTCGTCTGCGCCG 1481 consensus_5608#1 CATCACGGTGGTACGGAATCAGATCGGTAGTCCAGGTAAGAAAGAGCNTCGT-TGCTCC- 228 ** ******** ****** ******** ******** * ****** **** *** ** consensus_5608#0 CCGTCGGCGGTGTGGCCGCCGGTTGCTTCCTTGCGGTGTTGGTTGCCTTCGCCGTCGCGT 1541 consensus_5608#1 CCTTCGGCGGTGTGCC--CCGGTTGCTTCCT-GCGGTGTGTGGTGCCTT--CCGTCGCGT 283 ** *********** * ************* ******* * ****** ********* consensus_5608#0 GGGCTGTTCGCAGGAGGCAGAGGAAGGCC-GCGGCGGAGAAA-CCGGCTGATGGGCTTCT 1599 consensus_5608#1 GGGCTGTTCCCAGGAGGCAGNGGAAGGCCTGCGGCGGAGAANACCGGCTGATGTGCTTCT 343 ********* ********** ******** *********** ********** ****** consensus_5608#0 TGGCCCAACAAAAGGCTCCGCCCTTTATGACCCGGTCCAAAAATAAACAGGCCAATTTTT 1659 consensus_5608#1 TGGCCCCACNAAAGGCTCCCCCCTTTATGACCCGGTCCCAAAATNAACAGGCCCATTTTT 403 ****** ** ********* ****************** ***** ******** ****** consensus_5608#0 TAAGCCTTTTGTTTTGATAATATTATAGGGTATGTATAGCTATAATTGGGTTAACATGAA 1719 consensus_5608#1 TAAGCCTTTTGTTTTGATAATATTATAGGGTAAGTAAAGCTATAATTGGGT-AACATGAA 462 ******************************** *** ************** ******** consensus_5608#0 AGAATTATAAATGGGCCCAAAAACATCACATGCTTTGGCAATTTTTCAAGGAGAGAACTA 1779 consensus_5608#1 AGAATTANAAAGGGGTCCCAAAAAAAAAA------------------------------- 491 ******* *** *** ** **** * * consensus_5608#0 TATATTACCTCCCTTAACTAAAAAAAAAAAAA 1811 consensus_5608#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||