These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence [GTGGAGTGCGAGCTCCATTAGCACAAGATGCCAATCCCGTCGCCTCATCACGCCATGGCGGCGAGCCCAGCTCTCGCACCAACCCGCACGGTGCCGGTACTGCCGCCGCGCGGGCCGTCTCGCCACCGGAACGCCGCGGCACCGCCGTGTCGGCCTGCGACGGCGCGGATCGGCGCGTCTCCAGGCGACGGCGCGGCCGCGGCAGCAGCGGCTGCGGTGGAGCAGGGCAGTCGGAGCGAGGAGAAGGATAGGAAGCGATGCCTGCGGTGCGGGAGCCTGTATCTCGACGAGGACAACTCCCCCACCGACTGCGCCTTCCACGGCCACGTCACAGGGGAGAAGGGGTTGTTCTCGCTGTCGCCGCCGCACCAGGGGATCGACGGCGAATGGAGCGACAAGAGCGGGGTGATCGTGTACAGGTGGAACGACAGGGGGAGTCGCCCAAACACCGGGAGAGACAACTGGAAGGGGAGGTGGAGCTGCTGCCAGGAGCGCGACGAGGGCGCGCCCCCCTGCCGCCGCGGACGCCACGTCTCCTACGACGACGGTTTCACCCTCTACTAGACGCACTCTCTCTTAAGTACAGCGACGGTTTCACCCTCTACTAGACGCACTCTCTACAGCGAGAATGTGAGAGGAAGTCCCCAAAAAGCATTCGCAATGTTGATTCTGTACGTCAGTGTCAGATCAGTAGTGCGGAGTGTGGTAATCAAATGAA] [+] EMBL AK108749 [GTGGAGTGCGAGCTCCATTAGCACAAGATGCCAATCCCGTCGCCTCATCACGCCATGGCGGCGAGCCCAGCTCTCGCACCAACCCGCACGGTGCCGGTACTGCCGCCGCGCGGGCCGTCTCGCCACCGGAACGCCGCGGCACCGCCGTGTCGGCCTGCGACGGCGCGGATCGGCGCGTCTCCAGGCGACGGCGCGGCCGCGGCAGCAGCGGCTGCGGTGGAGCAGGGCAGTCGGAGCGAGGAGAAGGATAGGAAGCGATGCCTGCGGTGCGGGAGCCTGTATCTCGACGAGGACAACTCCCCCACCGACTGCGCCTTCCACGGCCACGTCACAGGGGAGAAGGGGTTGTTCTCGCTGTCGCCGCCGCACCAGGGGATCGACGGCGAATGGAGCGACAAGAGCGGGGTGATCGTGTACAGGTGGAACGACAGGGGGAGTCGCCCAAACACCGGGAGAGACAACTGGAAGGGGAGGTGGAGCTGCTGCCAGGAGCGCGACGAGGGCGCGCCCCCCTGCCGCCGCGGACGCCACGTCTCCTACGACGACGGTTTCACCCTCTACTAGACGCACTCTCTCTTAAGTACAGCGACGGTTTCACCCTCTACTAGACGCACTCTCTACAGCGAGAATGTGAGAGGAAGTCCCCAAAAAGCATTCGCAATGTTGATTCTGTACGTCAGTGTCAGATCAGTAGTGCGGAGTGTGGTAATCAAATGAA] consensusID : consensus_561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [AGCGGGGTGATCGTGTACAGGTGGAACGACAGGGGGAGTCGCCCAAGCACCGGGAGAGACAACTGGAAGGGGAGGTGGAGCTGCTGCCAGGAGCGCGACGAGGGCGCGCCGCCCTGCCGCCGCGGACGCCACGTCTCCTACGACGACGGTTTCACCCTCTACTAGACGCACTCTCTTAAGTACAGCGAGAATGTGAGAGGCAACCACAAGTCCCCAAAAAGCATTCGCAATGTTGATTCTGTACGTCAGTGTCAGATCAGTGGTGCGGGGTGTGGTAATCAAATGAATTGCTGCTCTAAATCACACATGCATCCATGATGCTAACAATGGAATCCTCTATG] [+] EMBL CF197411 [AGCGGGGTGATCGTGTACAGGTGGAACGACAGGGGGAGTCGCCCAAGCACCGGGAGAGACAACTGGAAGGGGAGGTGGAGCTGCTGCCAGGAGCGCGACGAGGGCGCGCCGCCCTGCCGCCGCGGACGCCACGTCTCCTACGACGACGGTTTCACCCTCTACTAGACGCACTCTCTTAAGTACAGCGAGAATGTGAGAGGCAACCACAAGTCCCCAAAAAGCATTCGCAATGTTGATTCTGTACGTCAGTGTCAGATCAGTGGTGCGGGGTGTGGTAATCAAATGAATTGCTGCTCTAAATCACACATGCATCCATGATGCTAACAATGGAATCCTCTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_561#0 GTGGAGTGCGAGCTCCATTAGCACAAGATGCCAATCCCGTCGCCTCATCACGCCATGGCG 60 consensus_561#1 ------------------------------------------------------------ consensus_561#0 GCGAGCCCAGCTCTCGCACCAACCCGCACGGTGCCGGTACTGCCGCCGCGCGGGCCGTCT 120 consensus_561#1 ------------------------------------------------------------ consensus_561#0 CGCCACCGGAACGCCGCGGCACCGCCGTGTCGGCCTGCGACGGCGCGGATCGGCGCGTCT 180 consensus_561#1 ------------------------------------------------------------ consensus_561#0 CCAGGCGACGGCGCGGCCGCGGCAGCAGCGGCTGCGGTGGAGCAGGGCAGTCGGAGCGAG 240 consensus_561#1 ------------------------------------------------------------ consensus_561#0 GAGAAGGATAGGAAGCGATGCCTGCGGTGCGGGAGCCTGTATCTCGACGAGGACAACTCC 300 consensus_561#1 ------------------------------------------------------------ consensus_561#0 CCCACCGACTGCGCCTTCCACGGCCACGTCACAGGGGAGAAGGGGTTGTTCTCGCTGTCG 360 consensus_561#1 ------------------------------------------------------------ consensus_561#0 CCGCCGCACCAGGGGATCGACGGCGAATGGAGCGACAAGAGCGGGGTGATCGTGTACAGG 420 consensus_561#1 ---------------------------------------AGCGGGGTGATCGTGTACAGG 21 ********************* consensus_561#0 TGGAACGACAGGGGGAGTCGCCCAAACACCGGGAGAGACAACTGGAAGGGGAGGTGGAGC 480 consensus_561#1 TGGAACGACAGGGGGAGTCGCCCAAGCACCGGGAGAGACAACTGGAAGGGGAGGTGGAGC 81 ************************* ********************************** consensus_561#0 TGCTGCCAGGAGCGCGACGAGGGCGCGCCCCCCTGCCGCCGCGGACGCCACGTCTCCTAC 540 consensus_561#1 TGCTGCCAGGAGCGCGACGAGGGCGCGCCGCCCTGCCGCCGCGGACGCCACGTCTCCTAC 141 ***************************** ****************************** consensus_561#0 GACGACGGTTTCACCCTCTACTAGACGCACTCTCTCTTAAGTACAGCGACGGTTTCACCC 600 consensus_561#1 GACGACGGTTTCACCCTCTACTAGACGCACTCTCT--TAAGTACAGCGAGAAT------- 192 *********************************** ************ * consensus_561#0 TCTACTAGACGCACTCTCTACAGCGAGAATGTGAGAGGAAGTCCCCAAAAAGCATTCGCA 660 consensus_561#1 ----------------------GTGAGAG-GCAACCACAAGTCCCCAAAAAGCATTCGCA 229 * **** * * ********************** consensus_561#0 ATGTTGATTCTGTACGTCAGTGTCAGATCAGTAGTGCGGAGTGTGGTAATCAAATGAA-- 718 consensus_561#1 ATGTTGATTCTGTACGTCAGTGTCAGATCAGTGGTGCGGGGTGTGGTAATCAAATGAATT 289 ******************************** ****** ****************** consensus_561#0 ---------------------------------------------------- consensus_561#1 GCTGCTCTAAATCACACATGCATCCATGATGCTAACAATGGAATCCTCTATG 341 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||