These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [AAGCACACACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGCGGCGGCGGCGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGTGCCGCTGATCGACGCGCAGGAGCTGACCAAGTGGTCCCTGTACCGCGCGGGGATCGCCGAGTGCGTGGCCACGCTGCTCTTCCCTTACTTCACGGCGGCCTCGGTCATCGGGTGCGGGCGCCTGTGGGACCCGGGCGCGAACGCCGGCGGAGCGCCATGCGACGCTGCCGGCCTTCCTCGGCATCTCCCGGCTGCTCCGCGCCTTGTCTGTTAGTCTTTTCTCCTGGCCCCTCGTAGTCGCGTGCGAGGGCGTTAGCGCCGGTGTGTGCGGGTGTCTCCTGGTCGGTTCGCTGGAGGCTGATCTCTCTGACACTTCACCTTCGTTGGCGTCACGTCGTGGGCACGCGCCCGCCCCCCCCCCCGCCCTGGGCCCGGCCGCCGCGACGTTGCGTGTCCGCGGGTTTGGTGCGCGTCTCGCTGCATTCGTTCCATCGCCTGTGCCCGTGTGGGCGGCTCGGGGCTGTGTCACGTCTTCAATACT] [+] EMBL CA755676 [AAGCACACACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGCGGCGGCGGCGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGTGCCGCTGATCGACGCGCAGGAGCTGACCAAGTGGTCCCTGTACCGCGCGGGGATCGCCGAGTGCGTGGCCACGCTGCTCTTCCCTTACTTCACGGCGGCCTCGGTCATCGGGTGCGGGCGCCTGTGGGACCCGGGCGCGAACGCCGGCGGAGCGCCATGCGACGCTGCCGGCCTTCCTCGGCATCTCCCGGCTGCTCCGCGCCTTGTCTGTTAGTCTTTTCTCCTGGCCCCTCGTAGTCGCGTGCGAGGGCGTTAGCGCCGGTGTGTGCGGGTGTCTCCTGGTCGGTTCGCTGGAGGCTGATCTCTCTGACACTTCACCTTCGTTGGCGTCACGTCGTGGGCACGCGCCCGCCCCCCCCCCCGCCCTGGGCCCGGCCGCCGCGACGTTGCGTGTCCGCGGGTTTGGTGCGCGTCTCGCTGCATTCGTTCCATCGCCTGTGCCCGTGTGGGCGGCTCGGGGCTGTGTCACGTCTTCAATACT] consensusID : consensus_5616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [ACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGCGGCGGCGGCGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGCGCCGCTGATCGACGCGGAGGAGCTGACCAAGTGGTCCCTGTACCGCGCGGTGATCGCCGAGTTCGTGGCCACGCTGCTCTTCCTCTACATCACGGTGGCCACGGTCATCGGGTACAAGCACCAGTCGGACCCGGGCGCGAACGCCGCCGACGCCGCGTGCAGCGGCGTCGGCATCCTCGGCATCGCGTGGGCGTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCGTGTCCGGTGGCCACATCAACCCGGCGGTGACGTTCGTGATCTTCCTGACGCGCAAGGTGTCGCTGCGGCGCGCGGTGCTGTCCTGGCGAGCGCAGAGTCTCGGCGCCTTCTGCGAGGTCGGTCTCCCCGGGGGGGCCCGAGCGGCGTGGTCGGGGGGTGTGGCGGTCGCCGGCCCCGAGGTCAGCGGCGGCGACTCCTCGGGAGCCGGTCGGCGCGGCACGCCCGTGCGTCGCTGCGGGGTGGGCTAC] [+] EMBL CA755123 [ACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGCGGCGGCGGCGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGCGCCGCTGATCGACGCGGAGGAGCTGACCAAGTGGTCCCTGTACCGCGCGGTGATCGCCGAGTTCGTGGCCACGCTGCTCTTCCTCTACATCACGGTGGCCACGGTCATCGGGTACAAGCACCAGTCGGACCCGGGCGCGAACGCCGCCGACGCCGCGTGCAGCGGCGTCGGCATCCTCGGCATCGCGTGGGCGTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCGTGTCCGGTGGCCACATCAACCCGGCGGTGACGTTCGTGATCTTCCTGACGCGCAAGGTGTCGCTGCGGCGCGCGGTGCTGTCCTGGCGAGCGCAGAGTCTCGGCGCCTTCTGCGAGGTCGGTCTCCCCGGGGGGGCCCGAGCGGCGTGGTCGGGGGGTGTGGCGGTCGCCGGCCCCGAGGTCAGCGGCGGCGACTCCTCGGGAGCCGGTCGGCGCGGCACGCCCGTGCGTCGCTGCGGGGTGGGCTAC] consensusID : consensus_5616#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [ACACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGNGGCGGCGGCGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGNCACGCTGATCGACGCGGAGNAGCTGACCAAGTGGTCCCTGTACCGCGCGGTNATCGCCGAGTTCGTGGNCACGCTGATCTTACTCTACATCACGGTGGCCACGGTCATCGGGTACAAGCACCAGTCGGACCCGGGCGCGAACGCNTCAACGTCGCGTGCAGGTTATTCCNCNTTCGCNAGATACCCNTNGCANCATTCGGCNANATNATCTNAACGG] [+] EMBL OSR1924A [ACACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGNGGCGGCGGCGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGNCACGCTGATCGACGCGGAGNAGCTGACCAAGTGGTCCCTGTACCGCGCGGTNATCGCCGAGTTCGTGGNCACGCTGATCTTACTCTACATCACGGTGGCCACGGTCATCGGGTACAAGCACCAGTCGGACCCGGGCGCGAACGCNTCAACGTCGCGTGCAGGTTATTCCNCNTTCGCNAGATACCCNTNGCANCATTCGGCNANATNATCTNAACGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5616#1 --------ACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGCGGCGGCGG 52 consensus_5616#2 ------ACACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGNGGCGGCGG 54 consensus_5616#0 AAGCACACACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGCGGCGGCGG 60 ******************************************* ******** consensus_5616#1 CGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGCGCCGCTGA 112 consensus_5616#2 CGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGNCACGCTGA 114 consensus_5616#0 CGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGTGCCGCTGA 120 *************************************************** ****** consensus_5616#1 TCGACGCGGAGGAGCTGACCAAGTGGTCCCTGTACCGCGCGGTGATCGCCGAGTTCGTGG 172 consensus_5616#2 TCGACGCGGAGNAGCTGACCAAGTGGTCCCTGTACCGCGCGGTNATCGCCGAGTTCGTGG 174 consensus_5616#0 TCGACGCGCAGGAGCTGACCAAGTGGTCCCTGTACCGCGCGGGGATCGCCGAGTGCGTGG 180 ******** ** ****************************** ********** ***** consensus_5616#1 CCACGCTGCTCTTCCTCTACATCACGGTGGCCACGGTCATCGGGTACAAGCACCAGTCGG 232 consensus_5616#2 NCACGCTGATCTTACTCTACATCACGGTGGCCACGGTCATCGGGTACAAGCACCAGTCGG 234 consensus_5616#0 CCACGCTGCTCTTCCCTTACTTCACGGCGGCCTCGGTCATCGGGTGCGGGCGCCTGTGGG 240 ******* **** * *** ****** **** ************ * ** ** ** ** consensus_5616#1 ACCCGGGCGCGAACGCCGCCGACGCCGCGTGCAGCGGCGTCGGCAT-CCTCGGCAT-CGC 290 consensus_5616#2 ACCCGGGCGCGAACGCN-TCAACGTCGCGTGCAGGTTATTCCNCNT-TCGCNAGATACCC 292 consensus_5616#0 ACCCGGGCGCGAACGCCGGCGGAGCGCCATGCGACGCTGCCGGCCTTCCTCGGCAT-CTC 299 **************** * * * *** * * * * * ** * * consensus_5616#1 GTGG--GCGTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCGTGTCCGGT 348 consensus_5616#2 NTNGCANCATTCGGCNANATNATCTNAACGG----------------------------- 323 consensus_5616#0 CCGG--CTGCTCCGCGCCTTGTCTGTTAGTCTTTTCTCCTGGCCCCTCGTAGTCGCGTGC 357 * ** ** * * consensus_5616#1 GGCCACATCAAC-CCGGCGGTGACGTTCGTGATCTTCCTGACGCGCAAGGTGTCGCTGCG 407 consensus_5616#2 ------------------------------------------------------------ consensus_5616#0 GAGGGCGTTAGCGCCGGTGTGTGCGGGTGTCTCCTGGTCGGTTCGCTGGAGGCTGATCTC 417 consensus_5616#1 GCGCGCGGTGCTGTCCTGGCGAGCGCAGAGTC-TCGGCGC-CTTCTGCGAGGTCGGTCTC 465 consensus_5616#2 ------------------------------------------------------------ consensus_5616#0 TCTGACACTTC-ACCTTCGTTGGCGTCACGTCGTGGGCACGCGCCCGCCCCCCCCCCCGC 476 consensus_5616#1 CCCGGGGGGGCCCGA-GCGGCGTGGTCGGGGGGTGTGGCGGTCGCCGGCCCCGAGGTCAG 524 consensus_5616#2 ------------------------------------------------------------ consensus_5616#0 CCTGGGCCCGGCCGCCGCGACGTTGCGTGTCCGCGGGTTTGGTGCGCGTCTCG----CTG 532 consensus_5616#1 CGGCGGCGACTCCTCGGGAGCCGGTCGGCGCGGCACGCCCGTGCGTCGCTGCGGGGTGGG 584 consensus_5616#2 ------------------------------------------------------------ consensus_5616#0 CATTCGTTCCATCGCCTGTGCCCGTGTGGGCGGCTCGGGGCTGTGTCACGTCTTCAATAC 592 consensus_5616#1 CTAC 588 consensus_5616#2 ---- consensus_5616#0 T--- 593 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||