cluster # 5625

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Oryza sativa
cluster # 5625 cluster # 5625 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5625#0 length = 1289 sequences # 2

consensus_5625#1 length = 419 sequences # 1

consensusID : consensus_5625#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1289
fasta sequence

                              [CGCTCGCCGCGCCGCCGCGGGTGGGGAGATTTGACCGGCGTTGACTCCGGGATGGACGGGCGGTTCCCGCTGCCGCCGGCGAGCGGAGGGGGGCGGGGGCACCACCGGCGGGCGCACTCGGAGACGTTCCTGCGGCTGCCCGACGCGGACCTCCTCCTCGACCCGGAGGGGGACTTCTCCTTCTCCGACCTCGACTTCCCCTCCCTCTCCGACGACTCCCCGGCCATCTCCGACCCGACCCCGCCGCCGCCGCCGCCGATGGCTGCGACCCCCGCGCCGGCGCCGCGGCCACCGGGTGGGGCGCACATGAGGAGCCTCTCCCTCGACACCGCCTTCTTCGAGGGTTTCTCGTTGCAGGGTGGGGGAGGAGGAGGAGGAGGAGGAGGGAGTGGGGGAAGTGGTGGGCATAAGAGGAGCGGGTCGATGGATGGGGTCAACTCGCCGTTCGAGGGTGAGTCGGCGCTCTCCGGTGGGCTACCGGACTACGCGAAGAAGGCCATGCCCGCGGAGAGGATCGCCGAGCTCGCGCTCATCGACCCCAAGCGCGCAAAGAGAATTCTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGAAAGGAAGATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCACGCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGCTCAAGCTACGGTT-GCAGTCCAT-GGAAGAGCAAGCTAAACTA-CGTGATGCTCT-GAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGGTAATCCCTTCAATGGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCATGCTCAGCAACGCCATCCAAGCCATCAGCAGAGCTCATCAAATGGCGGCCAGTCGCTGAGTGGTCAGTCCCTAAACGACTCCATGGATTTCATGTGAGGAGAAGAAACTCGGGGGCCCCTATTAAACCATATACCAACTGCAGCTCAGCATTGTAAAGATAGCTAATGTACAATGTAATGCATATGAATCATTGAATAGGGTAGCTAGCCGTTCTTTGTACCAGTAAACAGAAGTAATTCTTGTATGACATAATCCTCCCTTTCCCCCTTTGTTCATTCCTGGATTAATGCCTAGACTGAGTTAACTATGTTAACCATTTAACACTTGTCTTGTAAAGTGGTCGTT]

[+] EMBL AK065995             [CGCTCGCCGCGCCGCCGCGGGTGGGGAGATTTGACCGGCGTTGACTCCGGGATGGACGGGCGGTTCCCGCTGCCGCCGGCGAGCGGAGGGGGGCGGGGGCACCACCGGCGGGCGCACTCGGAGACGTTCCTGCGGCTGCCCGACGCGGACCTCCTCCTCGACCCGGAGGGGGACTTCTCCTTCTCCGACCTCGACTTCCCCTCCCTCTCCGACGACTCCCCGGCCATCTCCGACCCGACCCCGCCGCCGCCGCCGCCGATGGCTGCGACCCCCGCGCCGGCGCCGCGGCCACCGGGTGGGGCGCACATGAGGAGCCTCTCCCTCGACACCGCCTTCTTCGAGGGTTTCTCGTTGCAGGGTGGGGGAGGAGGAGGAGGAGGAGGAGGGAGTGGGGGAAGTGGTGGGCATAAGAGGAGCGGGTCGATGGATGGGGTCAACTCGCCGTTCGAGGGTGAGTCGGCGCTCTCCGGTGGGCTACCGGACTACGCGAAGAAGGCCATGCCCGCGGAGAGGATCGCCGAGCTCGCGCTCATCGACCCCAAGCGCGCAAAGAGAATTCTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGAAAGGAAGATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCACGCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGCTCAAGCTACGGTT GCAGTCCAT GGAAGAGCAAGCTAAACTA CGTGATGCTCT GAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGGTAATCCCTTCAATGGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCATGCTCAGCAACGCCATCCAAGCCATCAGCAGAGCTCATCAAATGGCGGCCAGTCGCTGAGTGGTCAGTCCCTAAACGACTCCATGGATTTCATGTGAGGAGAAGAAACTCGGGGGCCCCTATTAAACCATATACCAACTGCAGCTCAGCATTGTAAAGATAGCTAATGTACAATGTAATGCATATGAATCATTGAATAGGGTAGCTAGCCGTTCTTTGTACCAGTAAACAGAAGTAATTCTTGTATGACATAATCCTCCCTTTCCCCCTTTGTTCATTCCTGGATTAATGCCTAGACTGAGTTAACTATGTTAACCATTTAACACTTGTCTTGTAAAGTGGTCGTT]
[+] EMBL AF465825             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         cgTACCGGACTACGCGAAGAAGGCCATGCCCGCGGAGAGGATCGCCGAGCTCGCGCTCATCGACCCCAAGCGCGCAAAGAGAATTCTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGAAAGGAAGATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCCCGCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGCTCAAGCTACGGTTGGCAGTCCATGGGAAGAGCAAGCT AACTACCGTGATGCTCTGGAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGG AATCCCTTCAAT GGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCATGCTCAGCAACGCCATCCAAGCCATCAGCAGAGCTCATCAAATGGCGGCCAGTCGCTGAGTGGTCAGTCCCTAAACGACTCCATGGATTTCATGTGAGGAGAAGAAACTCGGGGGCCCCTATTAAACCATATACCAACTGCAGCTCAGCATTGTAAAGATAGCTAATGTACAATGTAATGCATATGAATCATTGAATAGGGTAGCTAGCCGTTCTTTGTACCAGTAAACAGAAGTAATTCTTGTATGACATAATCCTCCCTTTCCCCCTTTGTTCATTCCTGGATTAATGCCTAGACTGAG TAACTATGTTAACCATTTAACACTTGTC TGTAAAaaa      ]




>consensus_5625#0
CGCTCGCCGCGCCGCCGCGGGTGGGGAGATTTGACCGGCGTTGACTCCGGGATGGACGGG
CGGTTCCCGCTGCCGCCGGCGAGCGGAGGGGGGCGGGGGCACCACCGGCGGGCGCACTCG
GAGACGTTCCTGCGGCTGCCCGACGCGGACCTCCTCCTCGACCCGGAGGGGGACTTCTCC
TTCTCCGACCTCGACTTCCCCTCCCTCTCCGACGACTCCCCGGCCATCTCCGACCCGACC
CCGCCGCCGCCGCCGCCGATGGCTGCGACCCCCGCGCCGGCGCCGCGGCCACCGGGTGGG
GCGCACATGAGGAGCCTCTCCCTCGACACCGCCTTCTTCGAGGGTTTCTCGTTGCAGGGT
GGGGGAGGAGGAGGAGGAGGAGGAGGGAGTGGGGGAAGTGGTGGGCATAAGAGGAGCGGG
TCGATGGATGGGGTCAACTCGCCGTTCGAGGGTGAGTCGGCGCTCTCCGGTGGGCTACCG
GACTACGCGAAGAAGGCCATGCCCGCGGAGAGGATCGCCGAGCTCGCGCTCATCGACCCC
AAGCGCGCAAAGAGAATTCTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGAAAGGAAG
ATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCACG
CTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGA
GAGCTCAAGCTACGGTTGCAGTCCATGGAAGAGCAAGCTAAACTACGTGATGCTCTGAAT
GAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATG
AACGGGTAATCCCTTCAATGGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAAC
AGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCATGCTCAGCAACGCCATC
CAAGCCATCAGCAGAGCTCATCAAATGGCGGCCAGTCGCTGAGTGGTCAGTCCCTAAACG
ACTCCATGGATTTCATGTGAGGAGAAGAAACTCGGGGGCCCCTATTAAACCATATACCAA
CTGCAGCTCAGCATTGTAAAGATAGCTAATGTACAATGTAATGCATATGAATCATTGAAT
AGGGTAGCTAGCCGTTCTTTGTACCAGTAAACAGAAGTAATTCTTGTATGACATAATCCT
CCCTTTCCCCCTTTGTTCATTCCTGGATTAATGCCTAGACTGAGTTAACTATGTTAACCA
TTTAACACTTGTCTTGTAAAGTGGTCGTT

consensusID : consensus_5625#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [GAATTCGGCACGAGTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGGAAAGGAAGATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCACGCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGCTCAAGCTACGGTTGCAGTCCATGGAAGAGCAAGCTAAACTACGTGATGCTCTGAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGGAATCCCTTCAATGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCNTGCTCANCAACNCCTNCCANNC]

[+] EMBL AA751846             [GAATTCGGCACGAGTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGGAAAGGAAGATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCACGCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGCTCAAGCTACGGTTGCAGTCCATGGAAGAGCAAGCTAAACTACGTGATGCTCTGAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGGAATCCCTTCAATGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCNTGCTCANCAACNCCTNCCANNC]




>consensus_5625#1
GAATTCGGCACGAGTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGGAAAGGAAGATCA
AGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCACGCTGT
CTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGC
TCAAGCTACGGTTGCAGTCCATGGAAGAGCAAGCTAAACTACGTGATGCTCTGAATGAAG
CTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACG
GGAATCCCTTCAATGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGC
AGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCNTGCTCANCAACNCCTNCCANNC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5625#0      CGCTCGCCGCGCCGCCGCGGGTGGGGAGATTTGACCGGCGTTGACTCCGGGATGGACGGG 60
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      CGGTTCCCGCTGCCGCCGGCGAGCGGAGGGGGGCGGGGGCACCACCGGCGGGCGCACTCG 120
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      GAGACGTTCCTGCGGCTGCCCGACGCGGACCTCCTCCTCGACCCGGAGGGGGACTTCTCC 180
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      TTCTCCGACCTCGACTTCCCCTCCCTCTCCGACGACTCCCCGGCCATCTCCGACCCGACC 240
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      CCGCCGCCGCCGCCGCCGATGGCTGCGACCCCCGCGCCGGCGCCGCGGCCACCGGGTGGG 300
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      GCGCACATGAGGAGCCTCTCCCTCGACACCGCCTTCTTCGAGGGTTTCTCGTTGCAGGGT 360
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      GGGGGAGGAGGAGGAGGAGGAGGAGGGAGTGGGGGAAGTGGTGGGCATAAGAGGAGCGGG 420
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      TCGATGGATGGGGTCAACTCGCCGTTCGAGGGTGAGTCGGCGCTCTCCGGTGGGCTACCG 480
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      GACTACGCGAAGAAGGCCATGCCCGCGGAGAGGATCGCCGAGCTCGCGCTCATCGACCCC 540
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      AAGCGCGCAAAGAGAATTCTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGG-AAAGGAA 599
consensus_5625#1      GAATTCGGCACGAG-----TGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGGAAAGGAA 55
                       *   **  * ***     ********************************* *******

consensus_5625#0      GATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCAC 659
consensus_5625#1      GATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCAC 115
                      ************************************************************

consensus_5625#0      GCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAG 719
consensus_5625#1      GCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAG 175
                      ************************************************************

consensus_5625#0      AGAGCTCAAGCTACGGTTGCAGTCCATGGAAGAGCAAGCTAAACTACGTGATGCTCTGAA 779
consensus_5625#1      AGAGCTCAAGCTACGGTTGCAGTCCATGGAAGAGCAAGCTAAACTACGTGATGCTCTGAA 235
                      ************************************************************

consensus_5625#0      TGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACAT 839
consensus_5625#1      TGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACAT 295
                      ************************************************************

consensus_5625#0      GAACGGGTAATCCCTTCAATGGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAA 899
consensus_5625#1      GAACGGG-AATCCCTTCAATGG-TGGACTCCAACAGCAGATTCCGCCCTATTACACGCAA 353
                      ******* ************** *************************************

consensus_5625#0      CAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCATGCTCAGCAACGCCAT 959
consensus_5625#1      CAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCNTGCTCANCAACNCCTN 413
                      ******************************************* ****** **** **  

consensus_5625#0      CCAAGCCATCAGCAGAGCTCATCAAATGGCGGCCAGTCGCTGAGTGGTCAGTCCCTAAAC 1019
consensus_5625#1      CCANNC------------------------------------------------------ 419
                      ***  *                                                      

consensus_5625#0      GACTCCATGGATTTCATGTGAGGAGAAGAAACTCGGGGGCCCCTATTAAACCATATACCA 1079
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      ACTGCAGCTCAGCATTGTAAAGATAGCTAATGTACAATGTAATGCATATGAATCATTGAA 1139
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      TAGGGTAGCTAGCCGTTCTTTGTACCAGTAAACAGAAGTAATTCTTGTATGACATAATCC 1199
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      TCCCTTTCCCCCTTTGTTCATTCCTGGATTAATGCCTAGACTGAGTTAACTATGTTAACC 1259
consensus_5625#1      ------------------------------------------------------------
                                                                                  

consensus_5625#0      ATTTAACACTTGTCTTGTAAAGTGGTCGTT 1289
consensus_5625#1      ------------------------------