These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1289 fasta sequence [CGCTCGCCGCGCCGCCGCGGGTGGGGAGATTTGACCGGCGTTGACTCCGGGATGGACGGGCGGTTCCCGCTGCCGCCGGCGAGCGGAGGGGGGCGGGGGCACCACCGGCGGGCGCACTCGGAGACGTTCCTGCGGCTGCCCGACGCGGACCTCCTCCTCGACCCGGAGGGGGACTTCTCCTTCTCCGACCTCGACTTCCCCTCCCTCTCCGACGACTCCCCGGCCATCTCCGACCCGACCCCGCCGCCGCCGCCGCCGATGGCTGCGACCCCCGCGCCGGCGCCGCGGCCACCGGGTGGGGCGCACATGAGGAGCCTCTCCCTCGACACCGCCTTCTTCGAGGGTTTCTCGTTGCAGGGTGGGGGAGGAGGAGGAGGAGGAGGAGGGAGTGGGGGAAGTGGTGGGCATAAGAGGAGCGGGTCGATGGATGGGGTCAACTCGCCGTTCGAGGGTGAGTCGGCGCTCTCCGGTGGGCTACCGGACTACGCGAAGAAGGCCATGCCCGCGGAGAGGATCGCCGAGCTCGCGCTCATCGACCCCAAGCGCGCAAAGAGAATTCTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGAAAGGAAGATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCACGCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGCTCAAGCTACGGTT-GCAGTCCAT-GGAAGAGCAAGCTAAACTA-CGTGATGCTCT-GAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGGTAATCCCTTCAATGGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCATGCTCAGCAACGCCATCCAAGCCATCAGCAGAGCTCATCAAATGGCGGCCAGTCGCTGAGTGGTCAGTCCCTAAACGACTCCATGGATTTCATGTGAGGAGAAGAAACTCGGGGGCCCCTATTAAACCATATACCAACTGCAGCTCAGCATTGTAAAGATAGCTAATGTACAATGTAATGCATATGAATCATTGAATAGGGTAGCTAGCCGTTCTTTGTACCAGTAAACAGAAGTAATTCTTGTATGACATAATCCTCCCTTTCCCCCTTTGTTCATTCCTGGATTAATGCCTAGACTGAGTTAACTATGTTAACCATTTAACACTTGTCTTGTAAAGTGGTCGTT] [+] EMBL AK065995 [CGCTCGCCGCGCCGCCGCGGGTGGGGAGATTTGACCGGCGTTGACTCCGGGATGGACGGGCGGTTCCCGCTGCCGCCGGCGAGCGGAGGGGGGCGGGGGCACCACCGGCGGGCGCACTCGGAGACGTTCCTGCGGCTGCCCGACGCGGACCTCCTCCTCGACCCGGAGGGGGACTTCTCCTTCTCCGACCTCGACTTCCCCTCCCTCTCCGACGACTCCCCGGCCATCTCCGACCCGACCCCGCCGCCGCCGCCGCCGATGGCTGCGACCCCCGCGCCGGCGCCGCGGCCACCGGGTGGGGCGCACATGAGGAGCCTCTCCCTCGACACCGCCTTCTTCGAGGGTTTCTCGTTGCAGGGTGGGGGAGGAGGAGGAGGAGGAGGAGGGAGTGGGGGAAGTGGTGGGCATAAGAGGAGCGGGTCGATGGATGGGGTCAACTCGCCGTTCGAGGGTGAGTCGGCGCTCTCCGGTGGGCTACCGGACTACGCGAAGAAGGCCATGCCCGCGGAGAGGATCGCCGAGCTCGCGCTCATCGACCCCAAGCGCGCAAAGAGAATTCTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGAAAGGAAGATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCACGCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGCTCAAGCTACGGTT GCAGTCCAT GGAAGAGCAAGCTAAACTA CGTGATGCTCT GAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGGTAATCCCTTCAATGGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCATGCTCAGCAACGCCATCCAAGCCATCAGCAGAGCTCATCAAATGGCGGCCAGTCGCTGAGTGGTCAGTCCCTAAACGACTCCATGGATTTCATGTGAGGAGAAGAAACTCGGGGGCCCCTATTAAACCATATACCAACTGCAGCTCAGCATTGTAAAGATAGCTAATGTACAATGTAATGCATATGAATCATTGAATAGGGTAGCTAGCCGTTCTTTGTACCAGTAAACAGAAGTAATTCTTGTATGACATAATCCTCCCTTTCCCCCTTTGTTCATTCCTGGATTAATGCCTAGACTGAGTTAACTATGTTAACCATTTAACACTTGTCTTGTAAAGTGGTCGTT] [+] EMBL AF465825 [ cgTACCGGACTACGCGAAGAAGGCCATGCCCGCGGAGAGGATCGCCGAGCTCGCGCTCATCGACCCCAAGCGCGCAAAGAGAATTCTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGAAAGGAAGATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCCCGCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGCTCAAGCTACGGTTGGCAGTCCATGGGAAGAGCAAGCT AACTACCGTGATGCTCTGGAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGG AATCCCTTCAAT GGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCATGCTCAGCAACGCCATCCAAGCCATCAGCAGAGCTCATCAAATGGCGGCCAGTCGCTGAGTGGTCAGTCCCTAAACGACTCCATGGATTTCATGTGAGGAGAAGAAACTCGGGGGCCCCTATTAAACCATATACCAACTGCAGCTCAGCATTGTAAAGATAGCTAATGTACAATGTAATGCATATGAATCATTGAATAGGGTAGCTAGCCGTTCTTTGTACCAGTAAACAGAAGTAATTCTTGTATGACATAATCCTCCCTTTCCCCCTTTGTTCATTCCTGGATTAATGCCTAGACTGAG TAACTATGTTAACCATTTAACACTTGTC TGTAAAaaa ] consensusID : consensus_5625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [GAATTCGGCACGAGTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGGAAAGGAAGATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCACGCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGCTCAAGCTACGGTTGCAGTCCATGGAAGAGCAAGCTAAACTACGTGATGCTCTGAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGGAATCCCTTCAATGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCNTGCTCANCAACNCCTNCCANNC] [+] EMBL AA751846 [GAATTCGGCACGAGTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGGAAAGGAAGATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCACGCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAGAGAGCTCAAGCTACGGTTGCAGTCCATGGAAGAGCAAGCTAAACTACGTGATGCTCTGAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGGAATCCCTTCAATGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCNTGCTCANCAACNCCTNCCANNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5625#0 CGCTCGCCGCGCCGCCGCGGGTGGGGAGATTTGACCGGCGTTGACTCCGGGATGGACGGG 60 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 CGGTTCCCGCTGCCGCCGGCGAGCGGAGGGGGGCGGGGGCACCACCGGCGGGCGCACTCG 120 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 GAGACGTTCCTGCGGCTGCCCGACGCGGACCTCCTCCTCGACCCGGAGGGGGACTTCTCC 180 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 TTCTCCGACCTCGACTTCCCCTCCCTCTCCGACGACTCCCCGGCCATCTCCGACCCGACC 240 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 CCGCCGCCGCCGCCGCCGATGGCTGCGACCCCCGCGCCGGCGCCGCGGCCACCGGGTGGG 300 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 GCGCACATGAGGAGCCTCTCCCTCGACACCGCCTTCTTCGAGGGTTTCTCGTTGCAGGGT 360 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 GGGGGAGGAGGAGGAGGAGGAGGAGGGAGTGGGGGAAGTGGTGGGCATAAGAGGAGCGGG 420 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 TCGATGGATGGGGTCAACTCGCCGTTCGAGGGTGAGTCGGCGCTCTCCGGTGGGCTACCG 480 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 GACTACGCGAAGAAGGCCATGCCCGCGGAGAGGATCGCCGAGCTCGCGCTCATCGACCCC 540 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 AAGCGCGCAAAGAGAATTCTGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGG-AAAGGAA 599 consensus_5625#1 GAATTCGGCACGAG-----TGGCGAACAGGCAGTCGGCTGCAAGGTCCAAGGGAAAGGAA 55 * ** * *** ********************************* ******* consensus_5625#0 GATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCAC 659 consensus_5625#1 GATCAAGTACACTAGCGAGCTGGAGAGGAAGGTGCAGACACTGCAGACCGAGGCCACCAC 115 ************************************************************ consensus_5625#0 GCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAG 719 consensus_5625#1 GCTGTCTGCACAGCTCACGCTTCTCCAGAGGGATACATCTGGTTTAACTGCCGAGAATAG 175 ************************************************************ consensus_5625#0 AGAGCTCAAGCTACGGTTGCAGTCCATGGAAGAGCAAGCTAAACTACGTGATGCTCTGAA 779 consensus_5625#1 AGAGCTCAAGCTACGGTTGCAGTCCATGGAAGAGCAAGCTAAACTACGTGATGCTCTGAA 235 ************************************************************ consensus_5625#0 TGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACAT 839 consensus_5625#1 TGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACAT 295 ************************************************************ consensus_5625#0 GAACGGGTAATCCCTTCAATGGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAA 899 consensus_5625#1 GAACGGG-AATCCCTTCAATGG-TGGACTCCAACAGCAGATTCCGCCCTATTACACGCAA 353 ******* ************** ************************************* consensus_5625#0 CAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCATGCTCAGCAACGCCAT 959 consensus_5625#1 CAGCAGCAGCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCNTGCTCANCAACNCCTN 413 ******************************************* ****** **** ** consensus_5625#0 CCAAGCCATCAGCAGAGCTCATCAAATGGCGGCCAGTCGCTGAGTGGTCAGTCCCTAAAC 1019 consensus_5625#1 CCANNC------------------------------------------------------ 419 *** * consensus_5625#0 GACTCCATGGATTTCATGTGAGGAGAAGAAACTCGGGGGCCCCTATTAAACCATATACCA 1079 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 ACTGCAGCTCAGCATTGTAAAGATAGCTAATGTACAATGTAATGCATATGAATCATTGAA 1139 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 TAGGGTAGCTAGCCGTTCTTTGTACCAGTAAACAGAAGTAATTCTTGTATGACATAATCC 1199 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 TCCCTTTCCCCCTTTGTTCATTCCTGGATTAATGCCTAGACTGAGTTAACTATGTTAACC 1259 consensus_5625#1 ------------------------------------------------------------ consensus_5625#0 ATTTAACACTTGTCTTGTAAAGTGGTCGTT 1289 consensus_5625#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||